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format: jb-book
root: README
parts:
- caption: Getting started
chapters:
- file: docs/UseOverviewGuide
- file: docs/installation
sections:
# - file: docs/recipes/installTips
- file: docs/docker
# - file: docs/quick-start/index
# sections:
- caption: Main workflows overview
chapters:
- file: docs/main-workflows/user-guide
sections:
- file: docs/quick-start/single_animal_quick_guide
- file: docs/quick-start/tutorial_maDLC
- file: docs/main-workflows/multi-animal-tracking
# - file: docs/standardDeepLabCut_UserGuide
# - file: docs/maDLC_UserGuide
- file: docs/Overviewof3D
- caption: GUI workflow
chapters:
- file: docs/gui/PROJECT_GUI
sections:
- file: docs/beginner-guides/beginners-guide
- file: docs/beginner-guides/manage-project
- file: docs/beginner-guides/labeling
- file: docs/beginner-guides/Training-Evaluation
- file: docs/beginner-guides/video-analysis
- file: docs/gui/napari_GUI
sections:
- file: docs/gui/napari/basic_usage
- file: docs/gui/napari/advanced_usage
- file: docs/gui/napari/troubleshooting
- file: docs/gui/napari/tracking/basic_usage
- caption: Notebooks & Demos
chapters:
- file: docs/notebooks/your_data
sections:
- file: examples/COLAB/COLAB_YOURDATA_SuperAnimal
- file: examples/COLAB/COLAB_YOURDATA_TrainNetwork_VideoAnalysis
- file: examples/COLAB/COLAB_YOURDATA_maDLC_TrainNetwork_VideoAnalysis
- file: docs/notebooks/main_demos
sections:
- file: examples/COLAB/COLAB_DEMO_SuperAnimal
- file: examples/COLAB/COLAB_DEMO_mouse_openfield
- file: examples/COLAB/COLAB_3miceDemo
- file: examples/COLAB/COLAB_HumanPose_with_RTMPose
- file: docs/notebooks/extra
sections:
- file: examples/COLAB/COLAB_transformer_reID
- file: examples/COLAB/COLAB_BUCTD_and_CTD_tracking
- file: examples/JUPYTER/Demo_3D_DeepLabCut
- file: examples/COLAB/COLAB_DLC_ModelZoo
- caption: DeepLabCut 3.0 - PyTorch guides
chapters:
- file: docs/pytorch/index
sections:
- file: docs/pytorch/user_guide.md
- file: docs/pytorch/pytorch_config.md
- file: docs/pytorch/architectures.md
- file: docs/pytorch/Benchmarking_shuffle_guide
- caption: Advanced, Performance & Live
chapters:
- file: docs/ModelZoo
sections:
- file: docs/recipes/UsingModelZooPupil
- file: docs/dlc-live/deeplabcutlive
- file: docs/dlc-live/dlc-live-gui/index
sections:
- file: docs/dlc-live/dlc-live-gui/quickstart/install
- file: docs/dlc-live/dlc-live-gui/user_guide/overview
- file: docs/dlc-live/dlc-live-gui/user_guide/cameras_backends/camera_support
sections:
- file: docs/dlc-live/dlc-live-gui/user_guide/cameras_backends/opencv_backend
- file: docs/dlc-live/dlc-live-gui/user_guide/cameras_backends/basler_backend
- file: docs/dlc-live/dlc-live-gui/user_guide/cameras_backends/aravis_backend
- file: docs/dlc-live/dlc-live-gui/user_guide/cameras_backends/gentl_backend
- file: docs/dlc-live/dlc-live-gui/user_guide/camera_config
- file: docs/dlc-live/dlc-live-gui/user_guide/misc/misc_landing
sections:
- file: docs/dlc-live/dlc-live-gui/user_guide/misc/modelzoo_downloads
- file: docs/dlc-live/dlc-live-gui/user_guide/misc/timestamp_format
- file: docs/benchmark
- file: docs/recipes/TechHardware
- caption: Development
chapters:
- title: Developer Documentation
url: https://deeplabcut.github.io/DeepLabCut/dev/
- caption: Additional guides (Recipes)
chapters:
- file: docs/recipes/index
sections:
- file: docs/recipes/publishing_notebooks_into_the_DLC_main_cookbook
- file: docs/HelperFunctions
- file: docs/convert_maDLC
- file: docs/recipes/OtherData
- file: docs/recipes/io
- file: docs/recipes/nn
- file: docs/recipes/post
- file: docs/recipes/BatchProcessing
- file: docs/recipes/DLCMethods
- file: docs/recipes/ClusteringNapari
- file: docs/recipes/OpenVINO
- file: docs/recipes/flip_and_rotate
- file: docs/recipes/pose_cfg_file_breakdown
# - file: docs/course
- file: docs/dlc-utils/index
sections:
- file: docs/dlc-utils/XROMM/usage
- file: docs/dlc-utils/fish_kinematics/usage
- caption: Project & Community
chapters:
- file: docs/MISSION_AND_VALUES
- file: docs/roadmap
- file: docs/Governance
- file: CONTRIBUTING
- file: docs/citation