chore: sort dependencies in Cargo.tomls - #4046

### Bug Fixes

- *(daemon)* Periodically flush captured command output to disk
([#4070](#4070))
- *(daemon)* Stream large DeleteHistory requests
([#4076](#4076))
- *(daemon)* Delete captured output when history entries are deleted
([#4074](#4074))
- *(nix)* Export OpenSSL lib for LD_LIBRARY_PATH in nix devshell
([#4018](#4018))
- *(pty-proxy)* Make PTY proxy aware of other PTYs
([#4079](#4079))
- *(server)* Wrap multi-write DB operations in transactions
([#4088](#4088))
- *(server)* Emit HTTP access logs at INFO and compile in debug tracing
([#4087](#4087))
- *(sync)* Expand a packfile whose range is a hole below the store head
([#4085](#4085))
- Normalize output of `atuin --version`
([#4038](#4038))
- Make `atuin ai init` a no-op instead of erroring
([#4040](#4040))
- Do not try to decrypt plaintext records
([#4057](#4057))
- Behavior of PTY proxy on terminal resizes
([#4061](#4061))
- Build error ([#4094](#4094))

### Features

- *(daemon)* Daemon owns History Deletion
([#4045](#4045))
- *(mcp)* Make agents actually use the atuin MCP server
([#4050](#4050))
- *(pty-proxy)* Keep the start and end of command captures that exceed
the max size ([#4092](#4092))
- *(pty-proxy)* Mirror the CWD of the PTY proxy child
([#4091](#4091))
- Implement command capture and remove semantic.rs
([#4048](#4048))
- Simplify semantic captures
([#4065](#4065))
- Store terminal size in command captures
([#4072](#4072))
- Version Stored Output Capture and Avoid PB on disk
([#4068](#4068))
- Redact secrets from captured command output
([#4071](#4071))
- Rework inspector and add output view
([#4090](#4090))
- Add [output_capture] settings
([#4069](#4069))

### Miscellaneous Tasks

- *(ci)* Limit concurrency of workflows on same branch
([#4073](#4073))
- Lift dependencies into top-level Cargo.toml
([#4042](#4042))
- Sort dependencies in `Cargo.toml`s
([#4046](#4046))
- Enable Clippy cast warnings
([#4049](#4049))
- Temporary workaround for flaky test
([#4083](#4083))
- Emit proptest regression artifacts so CI failures are reproducible
([#4084](#4084))
- Lockfile bumps ([#4089](#4089))
- Don't fail if we can't capture output
([#4086](#4086))
- Link to upstream rustix issue in atuin-pty-proxy
([#4093](#4093))

### Refactor

- *(daemon)* Manage sync inside of the daemon
([#4055](#4055))
- *(daemon)* Split output capture into fjall and nop backends
([#4082](#4082))
- *(deps)* Bump mkdocs-material from 9.7.0 to 9.7.7 in /docs in the uv
group across 1 directory
([#4059](#4059))
- *(deps)* Bump vale-cli/vale-action from 2.1.2 to 3.0.0
([#3887](#3887))
- *(deps)* Bump rpassword from 7.4.0 to 7.5.0 in the cargo group across
1 directory ([#3877](#3877))
- *(history)* Make HistoryId a Copy Uuid
([#4013](#4013))
- Clean up the history service and fix minor bugs

### Testing

- *(daemon)* Adversarial test suites with new daemon
([#4058](#4058))
- E2e pty test harness
([#4075](#4075))
- Filtered commands leave no captured output
([#4081](#4081))

### Bug Fixes

- *(daemon)* Periodically flush captured command output to disk
([atuinsh#4070](atuinsh#4070))
- *(daemon)* Stream large DeleteHistory requests
([atuinsh#4076](atuinsh#4076))
- *(daemon)* Delete captured output when history entries are deleted
([atuinsh#4074](atuinsh#4074))
- *(nix)* Export OpenSSL lib for LD_LIBRARY_PATH in nix devshell
([atuinsh#4018](atuinsh#4018))
- *(pty-proxy)* Make PTY proxy aware of other PTYs
([atuinsh#4079](atuinsh#4079))
- *(server)* Wrap multi-write DB operations in transactions
([atuinsh#4088](atuinsh#4088))
- *(server)* Emit HTTP access logs at INFO and compile in debug tracing
([atuinsh#4087](atuinsh#4087))
- *(sync)* Expand a packfile whose range is a hole below the store head
([atuinsh#4085](atuinsh#4085))
- Normalize output of `atuin --version`
([atuinsh#4038](atuinsh#4038))
- Make `atuin ai init` a no-op instead of erroring
([atuinsh#4040](atuinsh#4040))
- Do not try to decrypt plaintext records
([atuinsh#4057](atuinsh#4057))
- Behavior of PTY proxy on terminal resizes
([atuinsh#4061](atuinsh#4061))
- Build error ([atuinsh#4094](atuinsh#4094))

### Features

- *(daemon)* Daemon owns History Deletion
([atuinsh#4045](atuinsh#4045))
- *(mcp)* Make agents actually use the atuin MCP server
([atuinsh#4050](atuinsh#4050))
- *(pty-proxy)* Keep the start and end of command captures that exceed
the max size ([atuinsh#4092](atuinsh#4092))
- *(pty-proxy)* Mirror the CWD of the PTY proxy child
([atuinsh#4091](atuinsh#4091))
- Implement command capture and remove semantic.rs
([atuinsh#4048](atuinsh#4048))
- Simplify semantic captures
([atuinsh#4065](atuinsh#4065))
- Store terminal size in command captures
([atuinsh#4072](atuinsh#4072))
- Version Stored Output Capture and Avoid PB on disk
([atuinsh#4068](atuinsh#4068))
- Redact secrets from captured command output
([atuinsh#4071](atuinsh#4071))
- Rework inspector and add output view
([atuinsh#4090](atuinsh#4090))
- Add [output_capture] settings
([atuinsh#4069](atuinsh#4069))

### Miscellaneous Tasks

- *(ci)* Limit concurrency of workflows on same branch
([atuinsh#4073](atuinsh#4073))
- Lift dependencies into top-level Cargo.toml
([atuinsh#4042](atuinsh#4042))
- Sort dependencies in `Cargo.toml`s
([atuinsh#4046](atuinsh#4046))
- Enable Clippy cast warnings
([atuinsh#4049](atuinsh#4049))
- Temporary workaround for flaky test
([atuinsh#4083](atuinsh#4083))
- Emit proptest regression artifacts so CI failures are reproducible
([atuinsh#4084](atuinsh#4084))
- Lockfile bumps ([atuinsh#4089](atuinsh#4089))
- Don't fail if we can't capture output
([atuinsh#4086](atuinsh#4086))
- Link to upstream rustix issue in atuin-pty-proxy
([atuinsh#4093](atuinsh#4093))

### Refactor

- *(daemon)* Manage sync inside of the daemon
([atuinsh#4055](atuinsh#4055))
- *(daemon)* Split output capture into fjall and nop backends
([atuinsh#4082](atuinsh#4082))
- *(deps)* Bump mkdocs-material from 9.7.0 to 9.7.7 in /docs in the uv
group across 1 directory
([atuinsh#4059](atuinsh#4059))
- *(deps)* Bump vale-cli/vale-action from 2.1.2 to 3.0.0
([atuinsh#3887](atuinsh#3887))
- *(deps)* Bump rpassword from 7.4.0 to 7.5.0 in the cargo group across
1 directory ([atuinsh#3877](atuinsh#3877))
- *(history)* Make HistoryId a Copy Uuid
([atuinsh#4013](atuinsh#4013))
- Clean up the history service and fix minor bugs

### Testing

- *(daemon)* Adversarial test suites with new daemon
([atuinsh#4058](atuinsh#4058))
- E2e pty test harness
([atuinsh#4075](atuinsh#4075))
- Filtered commands leave no captured output
([atuinsh#4081](atuinsh#4081))