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Copy pathcolumns.hpp
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80 lines (69 loc) · 3.58 KB
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// columns.hpp
/*===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
* Author: Vyacheslav Brover
*
* File Description:
* AMRFinderPlus column names
*
*/
// Columns
// PD-5085
constexpr const char* prot_colName = "Protein id"; // PD-2534
constexpr const char* contig_colName = "Contig id";
// Target
constexpr const char* start_colName = "Start";
constexpr const char* stop_colName = "Stop";
constexpr const char* strand_colName = "Strand";
//
constexpr const char* genesymbol_colName = "Element symbol"; // PD-4924
constexpr const char* elemName_colName = "Element name"; // PD-4910
constexpr const char* scope_colName = "Scope"; // PD-2825
// PD-1856
constexpr const char* type_colName = "Type";
constexpr const char* subtype_colName = "Subtype";
constexpr const char* class_colName = "Class";
constexpr const char* subclass_colName = "Subclass";
//
constexpr const char* method_colName = "Method";
constexpr const char* targetLen_colName = "Target length"; // was: "Element length" (temporarily)
constexpr const char* refLen_colName = "Reference sequence length";
constexpr const char* refCov_colName = "% Coverage of reference";
constexpr const char* refIdent_colName = "% Identity to reference";
constexpr const char* alignLen_colName = "Alignment length";
constexpr const char* closestRefAccession_colName = "Closest reference accession";
constexpr const char* closestRefName_colName = "Closest reference name";
constexpr const char* hmmAccession_colName = "HMM accession";
constexpr const char* hmmDescr_colName = "HMM description";
constexpr const char* hierarchyNode_colName = "Hierarchy node";
// PD-5155
constexpr const char* fusion_infix = "::"; // was: "/"
constexpr const char* na = "NA";
constexpr const char* disruption_delim = "_@";
// Methods
constexpr const char* frameshift_Name = "FRAMESHIFT";
constexpr const char* internalStop_Name = "INTERNAL_STOP";
constexpr const char* partial_Name = "PARTIAL";
constexpr const char* partialContigEnd_Name = "PARTIAL_CONTIG_END";