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# PUBLIC DOMAIN NOTICE

# National Center for Biotechnology Information

# This software is a "United States Government Work" under the

# terms of the United States Copyright Act. It was written as part of

# the authors' official duties as United States Government employees and

# thus cannot be copyrighted. This software is freely available

# to the public for use. The National Library of Medicine and the U.S.

# Government have not placed any restriction on its use or reproduction.

# Although all reasonable efforts have been taken to ensure the accuracy

# and reliability of the software and data, the NLM and the U.S.

# Government do not and cannot warrant the performance or results that

# may be obtained by using this software or data. The NLM and the U.S.

# Government disclaim all warranties, express or implied, including

# warranties of performance, merchantability or fitness for any particular

# purpose.

# Please cite NCBI in any work or product based on this material.

# Makefile

SHELL=/bin/bash

VENV?=.env

PYTHON_SRC=$(shell find src/elastic_blast bin -type f -name "*.py" ! -path "*eggs*" ! -path "*${VENV}*" ! -name __init__.py ! -path "*.tox*" ! -path "*coverage*" ! -path "*cache*" ! -path "./build*")

YAML_TEMPLATES=$(shell find src/elastic_blast/templates -type f)

all: elastic-blast

#############################################################################

# build targets

PYTHON_VERSION=3

blast-tuner: ${PYTHON_SRC} ${VENV}

source ${VENV}/bin/activate && pex --disable-cache . -r requirements/base.txt --python=python${PYTHON_VERSION} -c $@.py -o $@

-./$@ --version

elastic-blast: ${PYTHON_SRC} ${YAML_TEMPLATES} ${VENV} validate-cf-templates

source ${VENV}/bin/activate && pex --python-shebang='/usr/bin/env python3' --disable-cache . -r requirements/base.txt --python=python${PYTHON_VERSION} -c $@ -o $@

-./$@ --version

elastic-blast3.13: ${PYTHON_SRC} ${YAML_TEMPLATES} ${VENV} validate-cf-templates

source ${VENV}/bin/activate && pex --disable-cache . -r requirements/base.txt --python=python3.13 -c elastic-blast -o $@

-./$@ --version

elastic-blast3.11: ${PYTHON_SRC} ${YAML_TEMPLATES} ${VENV} validate-cf-templates

source ${VENV}/bin/activate && pex --disable-cache . -r requirements/base.txt --python=python3.11 -c elastic-blast -o $@

-./$@ --version

elastic-blast3.9: ${PYTHON_SRC} ${YAML_TEMPLATES} ${VENV} validate-cf-templates

source ${VENV}/bin/activate && pex --disable-cache . -r requirements/base.txt --python=python3.9 -c elastic-blast -o $@

-./$@ --version

elastic-blast3.8: ${PYTHON_SRC} ${YAML_TEMPLATES} ${VENV} validate-cf-templates

source ${VENV}/bin/activate && pex --disable-cache . -r requirements/base.txt --python=python3.8 -c elastic-blast -o $@

-./$@ --version

elastic-blast3.7: ${PYTHON_SRC} ${YAML_TEMPLATES} ${VENV} validate-cf-templates

source ${VENV}/bin/activate && pex --disable-cache . -r requirements/base.txt --python=python3.7 -c elastic-blast -o $@

-./$@ --version

%.md5: %

md5sum $< >$@

#############################################################################

# Python support

${VENV}: requirements/base.txt requirements/test.txt

[ -d ${VENV} ] || virtualenv -p python3 $@

${VENV}/bin/pip install packit

source ${VENV}/bin/activate && pip3 install -qe . -r requirements/test.txt --use-pep517

source ${VENV}/bin/activate && python3 setup.py install_data

#############################################################################

# AWS support

AWS_ACCOUNT=$(shell aws sts get-caller-identity --output json | jq -r .Account)

iam-policy.json: share/etc/elastic-blast-aws-iam-policy.json.template

AWS_ACCOUNT=${AWS_ACCOUNT} envsubst < $< > $@

.PHONY: validate-iam-policy

validate-iam-policy: iam-policy.json

#-AWS_PAGER='' aws accessanalyzer validate-policy --no-paginate --policy-document file://$< --policy-type IDENTITY_POLICY

-AWS_PAGER='' aws accessanalyzer validate-policy --no-paginate --policy-document file://$< --policy-type RESOURCE_POLICY

.PHONY: validate-cf-templates

validate-cf-templates:

AWS_PAGER='' aws --region us-east-1 cloudformation validate-template --template-body file://src/elastic_blast/templates/elastic-blast-cf.yaml

AWS_PAGER='' aws --region us-east-1 cloudformation validate-template --template-body file://src/elastic_blast/templates/elastic-blast-janitor-cf.yaml

AWS_PAGER='' aws --region us-east-1 cloudformation validate-template --template-body file://src/elastic_blast/templates/cloudformation-admin-iam.yaml

.PHONY: cfn-lint

cfn-lint: src/elastic_blast/templates/elastic-blast-cf.yaml ${VENV}

source ${VENV}/bin/activate && cfn-lint -t $<

#############################################################################

# Testing targets

.PHONY: pylint

pylint: ${VENV}

if [ ! -z "${TEAMCITY_PROJECT_NAME}" ]; then ARGS="--output-format=teamcity.pylint_reporter.TeamCityReporter"; fi; \

source ${VENV}/bin/activate && pylint --rcfile .pylintrc $$ARGS ${PYTHON_SRC}

.PHONY: mypy

mypy: ${VENV}

source ${VENV}/bin/activate && mypy src/elastic_blast/

.PHONY: yamllint

yamllint: ${VENV}