Sandbox::https://github.com/ncbi/tree-tool/blob/master/make.sh

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#!/bin/bash --noprofile

# For github distribution

unset AT_NCBI

cd "$( dirname $0 )"

export CPP_DIR=$PWD

source ./bash_common.sh

if [ $# -ne 1 ]; then

echo "Make executables"

echo "#1: rebuild (0/1)"

exit 1

REB=$1

function work

{

local DIR=$1

section $DIR

cd $DIR

if [ $REB == 1 ]; then

rm -f ./*.o

if [ -e Makefile ]; then

make all

}

work $CPP_DIR

work $CPP_DIR/dissim/nw

work $CPP_DIR/dissim

work $CPP_DIR/dm

work $CPP_DIR/dm/conversion

work $CPP_DIR/genetics

work $CPP_DIR/ncbitax

work $CPP_DIR/phylogeny

#work $CPP_DIR/phylogeny/database

work $CPP_DIR/tsv

work $CPP_DIR/web

work $CPP_DIR/xml

section "Software version"

$CPP_DIR/phylogeny/makeDistTree -version

success