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Cannot build pkgdown site because bioconductor is down 🤦🏼 · Issue #3030 · r-lib/pkgdown · GitHub
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Cannot build pkgdown site because bioconductor is down 🤦🏼 #3030

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@royfrancis

Cannot build pkgdown site because bioconductor is down and this package has nothing to do with bioconductor!

> pkgdown::build_site()
── Installing package test into temporary library ──────────────────────────
── Building pkgdown site for package test ─────────────────────────────────
Reading from: /Users/royfr474/Downloads/test
Writing to: /Users/royfr474/Downloads/test/docs
── Sitrep ──────────────────────────────────────────────────────────────────────
✔ URLs ok.
✔ Favicons ok.
✔ Open graph metadata ok.
✔ Articles metadata ok.
✔ Reference metadata ok.
── Initialising site ───────────────────────────────────────────────────────────
── Building home ───────────────────────────────────────────────────────────────
✖ Icon "fa-home fa-lg" lacks an `aria-label`.
ℹ Specify `aria-label` to make the icon accessible to screen readers.
ℹ Learn more in `vignette(pkgdown::accessibility)`.
This message is displayed once every 8 hours.
Writing `authors.html`
Reading AGENTS.md
Writing `AGENTS.html`
Reading LICENSE.md
Writing `LICENSE.html`
Writing `LICENSE-text.html`
Error: 
! in callr subprocess.
Caused by error in `httr2::req_perform(req)`:
! Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [www.bioconductor.org]:
Connection timed out after 10002 milliseconds
ℹ See `$stderr` for standard error.
Type .Last.error to see the more details.

Sidenote: pkgdown attempts to render 'AGENTS'.md' even if it's added to .Rbuildignore. Note sure if LICENSE.md needs to be rendered either.

> packageVersion("pkgdown")
[1] ‘2.2.1’

> sessionInfo()
R version 4.5.2 (2025-10-31)
Platform: aarch64-apple-darwin20.0.0
Running under: macOS Tahoe 26.7.1

Matrix products: default
BLAS/LAPACK: /opt/homebrew/Caskroom/miniforge/envs/r-4.5-arm/lib/libopenblas.0.dylib;  LAPACK version 3.12.0

locale:
[1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] jsonlite_2.0.0    compiler_4.5.2    Rcpp_1.1.1-1.1    rcmdcheck_1.4.0  
 [5] callr_3.7.6       later_1.4.8       yaml_2.3.12       fastmap_1.2.0    
 [9] R6_2.6.1          pak_0.10.0        curl_7.0.0        knitr_1.50       
[13] tibble_3.3.1      desc_1.4.3        rprojroot_2.1.1   pillar_1.11.1    
[17] rlang_1.2.0       cachem_1.1.0      xfun_0.56.5       fs_2.1.0         
[21] pkgload_1.4.1     memoise_2.0.1     cli_3.6.5         pkgdown_2.2.1    
[25] withr_3.0.2       magrittr_2.0.5    ps_1.9.3          digest_0.6.39    
[29] processx_3.9.0    rstudioapi_0.17.1 remotes_2.5.0     devtools_2.4.6   
[33] lifecycle_1.0.5   prettyunits_1.2.0 vctrs_0.7.3       evaluate_1.0.5   
[37] glue_1.8.1        xopen_1.0.1       sessioninfo_1.2.3 pkgbuild_1.4.8   
[41] rmarkdown_2.30    purrr_1.2.2       tools_4.5.2       usethis_3.2.1    
[45] pkgconfig_2.0.3   ellipsis_0.3.2    quarto_1.5.1      htmltools_0.5.9 

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