May-11 01:28:19.447 [main] DEBUG nextflow.cli.Launcher - $> nextflow -C /pentastor/home/linjinbin/biosoft/egapx-0.5.2/ui/assets/config/default.config,egapx_config/singularity.config -log Ath_out2/nextflow/nextflow.log run /pentastor/home/linjinbin/biosoft/egapx-0.5.2/ui/../nf/ui.nf --output Ath_out2 -with-report Ath_out2/nextflow/run.report.html -with-timeline Ath_out2/nextflow/run.timeline.html -with-dag Ath_out2/nextflow/run.dag.dot -with-trace Ath_out2/nextflow/run.trace.txt -params-file Ath_out2/nextflow/run_params.yaml
May-11 01:28:19.504 [main] INFO  nextflow.cli.CmdRun - N E X T F L O W  ~  version 23.10.1
May-11 01:28:19.521 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/pentastor/home/linjinbin/.nextflow/plugins; core-plugins: nf-amazon@2.1.4,nf-azure@1.3.3,nf-cloudcache@0.3.0,nf-codecommit@0.1.5,nf-console@1.0.6,nf-ga4gh@1.1.0,nf-google@1.8.3,nf-tower@1.6.3,nf-wave@1.0.1
May-11 01:28:19.527 [main] INFO  o.pf4j.DefaultPluginStatusProvider - Enabled plugins: []
May-11 01:28:19.528 [main] INFO  o.pf4j.DefaultPluginStatusProvider - Disabled plugins: []
May-11 01:28:19.530 [main] INFO  org.pf4j.DefaultPluginManager - PF4J version 3.4.1 in 'deployment' mode
May-11 01:28:19.537 [main] INFO  org.pf4j.AbstractPluginManager - No plugins
May-11 01:28:19.550 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/ui/assets/config/default.config
May-11 01:28:19.551 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: egapx_config/singularity.config
May-11 01:28:19.609 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `standard`
May-11 01:28:19.954 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `standard`
May-11 01:28:20.115 [main] DEBUG nextflow.cli.CmdRun - Applied DSL=2 from script declararion
May-11 01:28:20.125 [main] INFO  nextflow.cli.CmdRun - Launching `/pentastor/home/linjinbin/biosoft/egapx-0.5.2/ui/../nf/ui.nf` [awesome_coulomb] DSL2 - revision: a3f03b5276
May-11 01:28:20.126 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins default=[]
May-11 01:28:20.126 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins resolved requirement=[]
May-11 01:28:20.132 [main] DEBUG n.secret.LocalSecretsProvider - Secrets store: /pentastor/home/linjinbin/.nextflow/secrets/store.json
May-11 01:28:20.135 [main] DEBUG nextflow.secret.SecretsLoader - Discovered secrets providers: [nextflow.secret.LocalSecretsProvider@56e9a474] - activable => nextflow.secret.LocalSecretsProvider@56e9a474
May-11 01:28:20.170 [main] DEBUG nextflow.Session - Session UUID: 79463878-40ad-45cf-9200-abd45b734568
May-11 01:28:20.170 [main] DEBUG nextflow.Session - Run name: awesome_coulomb
May-11 01:28:20.171 [main] DEBUG nextflow.Session - Executor pool size: 100
May-11 01:28:20.176 [main] DEBUG nextflow.file.FilePorter - File porter settings maxRetries=3; maxTransfers=50; pollTimeout=null
May-11 01:28:20.192 [main] DEBUG nextflow.cli.CmdRun - 
  Version: 23.10.1 build 5891
  Created: 12-01-2024 22:01 UTC (13-01-2024 06:01 CDT)
  System: Linux 4.18.0-348.el8.x86_64
  Runtime: Groovy 3.0.19 on OpenJDK 64-Bit Server VM 21-internal-adhoc.conda.src
  Encoding: UTF-8 (UTF-8)
  Process: 3083105@fdwork17 [100.100.100.73]
  CPUs: 100 - Mem: 1.8 TB (1.8 TB) - Swap: 0 (0) - Virtual threads ON
May-11 01:28:20.211 [main] DEBUG nextflow.Session - Work-dir: Ath_work2 [ceph]
May-11 01:28:20.223 [main] DEBUG nextflow.executor.ExecutorFactory - Extension executors providers=[]
May-11 01:28:20.232 [main] DEBUG nextflow.Session - Observer factory: DefaultObserverFactory
May-11 01:28:20.260 [main] DEBUG nextflow.cache.CacheFactory - Using Nextflow cache factory: nextflow.cache.DefaultCacheFactory
May-11 01:28:20.266 [main] DEBUG nextflow.util.CustomPoolFactory - Creating virtual thread pool
May-11 01:28:20.484 [main] DEBUG nextflow.Session - Session start
May-11 01:28:20.487 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow started -- trace file: Ath_out2/nextflow/run.trace.txt
May-11 01:28:20.699 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution
May-11 01:28:30.716 [main] INFO  nextflow.script.BaseScript - workflow.container: egapx_v0.5.2.tar.sif
May-11 01:28:30.755 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:setup_genome:get_genome_info
May-11 01:28:30.755 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:setup_genome:get_genome_info
May-11 01:28:30.766 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.766 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.770 [main] DEBUG nextflow.executor.Executor - [warm up] executor > local
May-11 01:28:30.774 [main] DEBUG n.processor.LocalPollingMonitor - Creating local task monitor for executor 'local' > cpus=100; memory=1.8 TB; capacity=100; pollInterval=100ms; dumpInterval=5m
May-11 01:28:30.776 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: local)
May-11 01:28:30.835 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:winmask_plane:make_winmask_stats:run_winmask_stats
May-11 01:28:30.835 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:winmask_plane:make_winmask_stats:run_winmask_stats
May-11 01:28:30.836 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.836 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.855 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `gpx_submitter,small_mem` for process with name egapx:winmask_plane:winmask_wnode:gpx_qsubmit
May-11 01:28:30.855 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:gpx_submitter` matches labels `gpx_submitter,small_mem` for process with name egapx:winmask_plane:winmask_wnode:gpx_qsubmit
May-11 01:28:30.856 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.856 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.861 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `multi_node,small_mem` for process with name egapx:winmask_plane:winmask_wnode:run_winmask_wnode
May-11 01:28:30.861 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `multi_node,small_mem` for process with name egapx:winmask_plane:winmask_wnode:run_winmask_wnode
May-11 01:28:30.861 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.861 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.864 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:winmask_plane:winmask_wnode:gpx_make_outputs
May-11 01:28:30.864 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:winmask_plane:winmask_wnode:gpx_make_outputs
May-11 01:28:30.864 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.864 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.866 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:winmask_plane:winmask_wnode:combine_blast_db
May-11 01:28:30.866 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:winmask_plane:winmask_wnode:combine_blast_db
May-11 01:28:30.867 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.867 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.869 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:winmask_plane:prepare_masks:gp_annot_format
May-11 01:28:30.869 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:winmask_plane:prepare_masks:gp_annot_format
May-11 01:28:30.869 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.869 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.874 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `single_cpu,med_mem` for process with name egapx:winmask_plane:prepare_masks:convert_rfam_mask
May-11 01:28:30.874 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,med_mem` for process with name egapx:winmask_plane:prepare_masks:convert_rfam_mask
May-11 01:28:30.874 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.874 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.877 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:winmask_plane:prepare_masks:combine_blast_db_softmask
May-11 01:28:30.877 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:winmask_plane:prepare_masks:combine_blast_db_softmask
May-11 01:28:30.877 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.877 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.878 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:winmask_plane:prepare_masks:combine_blast_db_alt_softmask
May-11 01:28:30.878 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:winmask_plane:prepare_masks:combine_blast_db_alt_softmask
May-11 01:28:30.879 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.879 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.881 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `single_cpu,med_mem` for process with name egapx:winmask_plane:prepare_masks:convert_softmask
May-11 01:28:30.881 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,med_mem` for process with name egapx:winmask_plane:prepare_masks:convert_softmask
May-11 01:28:30.881 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.881 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.883 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:winmask_plane:gc_makeblastdb:run_gc_makeblastdb
May-11 01:28:30.883 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:winmask_plane:gc_makeblastdb:run_gc_makeblastdb
May-11 01:28:30.884 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.884 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.886 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:winmask_plane:mask_assm_stats:run_mask_assm_stats
May-11 01:28:30.886 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:winmask_plane:mask_assm_stats:run_mask_assm_stats
May-11 01:28:30.886 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.886 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.889 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:setup_proteins:convert_proteins
May-11 01:28:30.889 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:setup_proteins:convert_proteins
May-11 01:28:30.889 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.889 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.894 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:target_proteins_plane:miniprot:split_proteins
May-11 01:28:30.894 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:target_proteins_plane:miniprot:split_proteins
May-11 01:28:30.894 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.894 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.896 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:long_job` matches labels `long_job,multi_node,large_mem` for process with name egapx:target_proteins_plane:miniprot:run_miniprot
May-11 01:28:30.897 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:large_mem` matches labels `long_job,multi_node,large_mem` for process with name egapx:target_proteins_plane:miniprot:run_miniprot
May-11 01:28:30.897 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `long_job,multi_node,large_mem` for process with name egapx:target_proteins_plane:miniprot:run_miniprot
May-11 01:28:30.897 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.897 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.900 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:long_job` matches labels `long_job,multi_node,small_mem` for process with name egapx:target_proteins_plane:paf2asn:run_paf2asn
May-11 01:28:30.900 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `long_job,multi_node,small_mem` for process with name egapx:target_proteins_plane:paf2asn:run_paf2asn
May-11 01:28:30.901 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `long_job,multi_node,small_mem` for process with name egapx:target_proteins_plane:paf2asn:run_paf2asn
May-11 01:28:30.901 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.901 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.905 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:target_proteins_plane:best_aligned_prot:run_best_aligned_prot
May-11 01:28:30.906 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:target_proteins_plane:best_aligned_prot:run_best_aligned_prot
May-11 01:28:30.906 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.906 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.910 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `multi_cpu,small_mem` for process with name egapx:target_proteins_plane:align_filter_sa:run_align_filter_sa
May-11 01:28:30.910 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_cpu` matches labels `multi_cpu,small_mem` for process with name egapx:target_proteins_plane:align_filter_sa:run_align_filter_sa
May-11 01:28:30.910 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.910 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.914 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:large_mem` matches labels `multi_cpu,large_mem` for process with name egapx:target_proteins_plane:align_sort_sa:run_align_sort
May-11 01:28:30.915 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_cpu` matches labels `multi_cpu,large_mem` for process with name egapx:target_proteins_plane:align_sort_sa:run_align_sort
May-11 01:28:30.915 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.915 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.924 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `multi_cpu,med_mem` for process with name egapx:rnaseq_short_plane:star_index:build_index
May-11 01:28:30.924 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_cpu` matches labels `multi_cpu,med_mem` for process with name egapx:rnaseq_short_plane:star_index:build_index
May-11 01:28:30.924 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.924 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.930 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:long_job` matches labels `multi_node,med_mem,long_job` for process with name egapx:rnaseq_short_plane:star:run_star
May-11 01:28:30.931 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `multi_node,med_mem,long_job` for process with name egapx:rnaseq_short_plane:star:run_star
May-11 01:28:30.931 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `multi_node,med_mem,long_job` for process with name egapx:rnaseq_short_plane:star:run_star
May-11 01:28:30.931 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.931 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.937 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `large_disk,single_cpu,small_mem` for process with name egapx:rnaseq_short_plane:bam_strandedness:rnaseq_divide_by_strandedness
May-11 01:28:30.937 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `large_disk,single_cpu,small_mem` for process with name egapx:rnaseq_short_plane:bam_strandedness:rnaseq_divide_by_strandedness
May-11 01:28:30.938 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.938 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.941 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `large_disk,single_cpu,small_mem` for process with name egapx:rnaseq_short_plane:bam_bin_and_sort:calc_assembly_sizes
May-11 01:28:30.941 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `large_disk,single_cpu,small_mem` for process with name egapx:rnaseq_short_plane:bam_bin_and_sort:calc_assembly_sizes
May-11 01:28:30.941 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.941 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.945 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `multi_node,small_mem` for process with name egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin
May-11 01:28:30.945 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `multi_node,small_mem` for process with name egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin
May-11 01:28:30.945 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.945 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.948 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `large_disk,single_cpu` for process with name egapx:rnaseq_short_plane:bam_bin_and_sort:merge_prepare
May-11 01:28:30.948 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.948 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.950 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `multi_node,small_mem,large_disk` for process with name egapx:rnaseq_short_plane:bam_bin_and_sort:merge
May-11 01:28:30.950 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `multi_node,small_mem,large_disk` for process with name egapx:rnaseq_short_plane:bam_bin_and_sort:merge
May-11 01:28:30.950 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.950 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.954 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:long_job` matches labels `long_job,large_disk,multi_node,small_mem` for process with name egapx:rnaseq_short_plane:bam2asn:convert
May-11 01:28:30.954 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `long_job,large_disk,multi_node,small_mem` for process with name egapx:rnaseq_short_plane:bam2asn:convert
May-11 01:28:30.955 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `long_job,large_disk,multi_node,small_mem` for process with name egapx:rnaseq_short_plane:bam2asn:convert
May-11 01:28:30.955 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.955 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.961 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:rnaseq_short_plane:rnaseq_collapse:generate_jobs
May-11 01:28:30.961 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:rnaseq_short_plane:rnaseq_collapse:generate_jobs
May-11 01:28:30.961 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.961 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.964 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `multi_node,small_mem` for process with name egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse
May-11 01:28:30.964 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `multi_node,small_mem` for process with name egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse
May-11 01:28:30.965 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.965 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.967 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:rnaseq_short_plane:rnaseq_collapse:run_gpx_make_outputs
May-11 01:28:30.967 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:rnaseq_short_plane:rnaseq_collapse:run_gpx_make_outputs
May-11 01:28:30.968 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.968 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.977 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `multi_cpu,med_mem` for process with name egapx:rnaseq_long_plane:minimap2_index:run_minimap2_index
May-11 01:28:30.977 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_cpu` matches labels `multi_cpu,med_mem` for process with name egapx:rnaseq_long_plane:minimap2_index:run_minimap2_index
May-11 01:28:30.978 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.978 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.984 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:rnaseq_long_plane:rename_fasta_ids
May-11 01:28:30.984 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:rnaseq_long_plane:rename_fasta_ids
May-11 01:28:30.985 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:30.985 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:30.989 [main] WARN  nextflow.extension.OperatorImpl - The operator `first` is useless when applied to a value channel which returns a single value by definition -- check channel `genome_fasta`
May-11 01:28:31.913 [main] WARN  nextflow.extension.OperatorImpl - The operator `first` is useless when applied to a value channel which returns a single value by definition -- check channel `genome_index`
May-11 01:28:31.913 [main] WARN  nextflow.extension.OperatorImpl - The operator `first` is useless when applied to a value channel which returns a single value by definition -- check channel `gencoll`
May-11 01:28:31.917 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files
May-11 01:28:31.917 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files
May-11 01:28:31.917 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.917 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.921 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:long_job` matches labels `long_job,multi_node,large_mem` for process with name egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta
May-11 01:28:31.922 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:large_mem` matches labels `long_job,multi_node,large_mem` for process with name egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta
May-11 01:28:31.922 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `long_job,multi_node,large_mem` for process with name egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta
May-11 01:28:31.922 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.922 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.925 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:rnaseq_long_plane:minimap2_fasta:gpx_qdump
May-11 01:28:31.925 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:rnaseq_long_plane:minimap2_fasta:gpx_qdump
May-11 01:28:31.926 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.926 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.930 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:rnaseq_long_plane:filter_est_align:align_filter
May-11 01:28:31.930 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:rnaseq_long_plane:filter_est_align:align_filter
May-11 01:28:31.930 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.931 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.932 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:large_mem` matches labels `single_cpu,large_mem` for process with name egapx:rnaseq_long_plane:filter_est_align:align_sort
May-11 01:28:31.933 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,large_mem` for process with name egapx:rnaseq_long_plane:filter_est_align:align_sort
May-11 01:28:31.933 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.933 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.938 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:large_mem` matches labels `multi_cpu,large_mem` for process with name egapx:gnomon_plane:gnomon_align_sort:run_align_sort
May-11 01:28:31.938 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_cpu` matches labels `multi_cpu,large_mem` for process with name egapx:gnomon_plane:gnomon_align_sort:run_align_sort
May-11 01:28:31.938 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.939 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.947 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:generate_jobs
May-11 01:28:31.947 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:gpx_submitter` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:generate_jobs
May-11 01:28:31.947 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.947 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.950 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:long_job` matches labels `long_job,multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:run_chainer
May-11 01:28:31.950 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `long_job,multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:run_chainer
May-11 01:28:31.950 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `long_job,multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:run_chainer
May-11 01:28:31.950 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.950 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.953 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:run_gpx_make_outputs
May-11 01:28:31.953 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:run_gpx_make_outputs
May-11 01:28:31.954 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.954 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.959 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_wnode:gpx_qsubmit
May-11 01:28:31.959 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:gpx_submitter` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_wnode:gpx_qsubmit
May-11 01:28:31.959 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.959 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.962 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_wnode:annot
May-11 01:28:31.962 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_wnode:annot
May-11 01:28:31.962 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.962 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.965 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_wnode:gpx_qdump
May-11 01:28:31.965 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_wnode:gpx_qdump
May-11 01:28:31.965 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.965 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.969 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.969 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.973 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:generate_jobs
May-11 01:28:31.973 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:gpx_submitter` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:generate_jobs
May-11 01:28:31.973 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.973 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.975 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:long_job` matches labels `long_job,multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:run_chainer
May-11 01:28:31.975 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `long_job,multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:run_chainer
May-11 01:28:31.975 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `long_job,multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:run_chainer
May-11 01:28:31.975 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.975 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.978 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:run_gpx_make_outputs
May-11 01:28:31.978 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:run_gpx_make_outputs
May-11 01:28:31.978 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.978 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.981 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_wnode:gpx_qsubmit
May-11 01:28:31.981 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:gpx_submitter` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_wnode:gpx_qsubmit
May-11 01:28:31.981 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.981 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.983 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_wnode:annot
May-11 01:28:31.984 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_wnode:annot
May-11 01:28:31.984 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.984 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.986 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_wnode:gpx_qdump
May-11 01:28:31.986 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_wnode:gpx_qdump
May-11 01:28:31.986 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.986 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.988 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.988 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.992 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:generate_jobs
May-11 01:28:31.992 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:gpx_submitter` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:generate_jobs
May-11 01:28:31.992 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.992 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.994 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:long_job` matches labels `long_job,multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:run_chainer
May-11 01:28:31.995 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `long_job,multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:run_chainer
May-11 01:28:31.995 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `long_job,multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:run_chainer
May-11 01:28:31.995 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.995 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:31.998 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:run_gpx_make_outputs
May-11 01:28:31.998 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:run_gpx_make_outputs
May-11 01:28:31.998 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:31.998 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.001 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_wnode:gpx_qsubmit
May-11 01:28:32.001 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:gpx_submitter` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_wnode:gpx_qsubmit
May-11 01:28:32.001 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.001 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.003 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_wnode:annot
May-11 01:28:32.003 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_wnode:annot
May-11 01:28:32.004 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.004 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.006 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_wnode:gpx_qdump
May-11 01:28:32.006 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_wnode:gpx_qdump
May-11 01:28:32.007 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.007 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.009 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.009 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.012 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:generate_jobs
May-11 01:28:32.012 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:gpx_submitter` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:generate_jobs
May-11 01:28:32.012 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.012 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.014 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:long_job` matches labels `long_job,multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:run_chainer
May-11 01:28:32.014 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `long_job,multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:run_chainer
May-11 01:28:32.014 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `long_job,multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:run_chainer
May-11 01:28:32.015 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.015 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.017 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:run_gpx_make_outputs
May-11 01:28:32.017 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:run_gpx_make_outputs
May-11 01:28:32.018 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.018 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.020 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_wnode:gpx_qsubmit
May-11 01:28:32.020 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:gpx_submitter` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_wnode:gpx_qsubmit
May-11 01:28:32.021 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.021 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.023 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_wnode:annot
May-11 01:28:32.023 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_wnode:annot
May-11 01:28:32.024 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.024 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.026 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_wnode:gpx_qdump
May-11 01:28:32.026 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_wnode:gpx_qdump
May-11 01:28:32.027 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.027 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.029 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.029 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.035 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:chainer:generate_jobs
May-11 01:28:32.035 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:gpx_submitter` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:chainer:generate_jobs
May-11 01:28:32.036 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.036 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.039 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:long_job` matches labels `long_job,multi_node,med_mem` for process with name egapx:gnomon_plane:chainer:run_chainer
May-11 01:28:32.039 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `long_job,multi_node,med_mem` for process with name egapx:gnomon_plane:chainer:run_chainer
May-11 01:28:32.039 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `long_job,multi_node,med_mem` for process with name egapx:gnomon_plane:chainer:run_chainer
May-11 01:28:32.039 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.039 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.042 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:chainer:run_gpx_make_outputs
May-11 01:28:32.042 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:chainer:run_gpx_make_outputs
May-11 01:28:32.043 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.043 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.048 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_wnode:gpx_qsubmit
May-11 01:28:32.048 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:gpx_submitter` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_wnode:gpx_qsubmit
May-11 01:28:32.048 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.048 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.051 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_wnode:annot
May-11 01:28:32.051 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_wnode:annot
May-11 01:28:32.052 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.052 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.054 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_wnode:gpx_qdump
May-11 01:28:32.055 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_wnode:gpx_qdump
May-11 01:28:32.055 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.055 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.060 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_evidence_summary:generate_scaffolds
May-11 01:28:32.060 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_evidence_summary:generate_scaffolds
May-11 01:28:32.060 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.060 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.062 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_evidence_summary:gpx_qsubmit
May-11 01:28:32.062 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:gpx_submitter` matches labels `gpx_submitter,small_mem` for process with name egapx:gnomon_plane:gnomon_evidence_summary:gpx_qsubmit
May-11 01:28:32.063 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.063 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.066 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_evidence_summary:gnomon_report
May-11 01:28:32.066 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `multi_node,med_mem` for process with name egapx:gnomon_plane:gnomon_evidence_summary:gnomon_report
May-11 01:28:32.066 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.066 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.069 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_evidence_summary:gpx_qdump
May-11 01:28:32.069 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_evidence_summary:gpx_qdump
May-11 01:28:32.069 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.069 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.071 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_evidence_summary:create_reports
May-11 01:28:32.071 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_evidence_summary:create_reports
May-11 01:28:32.071 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.071 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.073 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_evidence_summary:gnomon_summary
May-11 01:28:32.073 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_evidence_summary:gnomon_summary
May-11 01:28:32.073 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.073 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.075 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:fetch_swiss_prot_asn
May-11 01:28:32.075 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:fetch_swiss_prot_asn
May-11 01:28:32.075 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.075 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.077 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem,sqlite3` for process with name egapx:gnomon_plane:get_swiss_prot_ids
May-11 01:28:32.077 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem,sqlite3` for process with name egapx:gnomon_plane:get_swiss_prot_ids
May-11 01:28:32.077 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.077 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.080 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:prot_gnomon_prepare:prot_gnomon_prepare_p
May-11 01:28:32.080 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:prot_gnomon_prepare:prot_gnomon_prepare_p
May-11 01:28:32.080 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.080 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.085 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `multi_cpu,med_mem` for process with name egapx:gnomon_plane:diamond_worker:run_diamond_egap
May-11 01:28:32.085 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_cpu` matches labels `multi_cpu,med_mem` for process with name egapx:gnomon_plane:diamond_worker:run_diamond_egap
May-11 01:28:32.086 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.086 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.090 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `multi_cpu,small_mem` for process with name egapx:gnomon_plane:best_protein_hits:run_protein_filter_replacement
May-11 01:28:32.090 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_cpu` matches labels `multi_cpu,small_mem` for process with name egapx:gnomon_plane:best_protein_hits:run_protein_filter_replacement
May-11 01:28:32.090 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.091 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.095 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_add_filtering_scores:gnomon_filter_models
May-11 01:28:32.095 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:gnomon_plane:gnomon_add_filtering_scores:gnomon_filter_models
May-11 01:28:32.095 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.095 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.098 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:cmsearch_plane:prime_cache
May-11 01:28:32.098 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:cmsearch_plane:prime_cache
May-11 01:28:32.098 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.098 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.102 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `multi_node,med_mem` for process with name egapx:cmsearch_plane:cmsearch_wnode
May-11 01:28:32.102 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `multi_node,med_mem` for process with name egapx:cmsearch_plane:cmsearch_wnode
May-11 01:28:32.104 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.104 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.105 [main] DEBUG nextflow.processor.TaskProcessor - Creating *combiner* operator for each param(s) at index(es): [3]
May-11 01:28:32.111 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:cmsearch_plane:gpx_qdump_and_annot_merge
May-11 01:28:32.111 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:cmsearch_plane:gpx_qdump_and_annot_merge
May-11 01:28:32.112 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.112 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.113 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:trnascan_plane:prime_cache
May-11 01:28:32.114 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:trnascan_plane:prime_cache
May-11 01:28:32.114 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.114 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.116 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `multi_node,small_mem` for process with name egapx:trnascan_plane:trnascan_wnode
May-11 01:28:32.116 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_node` matches labels `multi_node,small_mem` for process with name egapx:trnascan_plane:trnascan_wnode
May-11 01:28:32.116 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.116 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.117 [main] DEBUG nextflow.processor.TaskProcessor - Creating *combiner* operator for each param(s) at index(es): [2]
May-11 01:28:32.119 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:trnascan_plane:trnascan_dump
May-11 01:28:32.119 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:trnascan_plane:trnascan_dump
May-11 01:28:32.120 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.120 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.123 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:gnomon_biotype:run_gnomon_biotype
May-11 01:28:32.123 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:gnomon_biotype:run_gnomon_biotype
May-11 01:28:32.124 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.124 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.127 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:annot_builder:annot_builder_run
May-11 01:28:32.127 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:annot_builder:annot_builder_run
May-11 01:28:32.128 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.128 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.131 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:print_fake_lxr_data
May-11 01:28:32.131 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:print_fake_lxr_data
May-11 01:28:32.131 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.131 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.133 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `multi_cpu,small_mem` for process with name egapx:annot_proc_plane:orthology_plane:fetch_ortholog_references
May-11 01:28:32.133 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_cpu` matches labels `multi_cpu,small_mem` for process with name egapx:annot_proc_plane:orthology_plane:fetch_ortholog_references
May-11 01:28:32.134 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.134 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.138 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:orthology_plane:setup_ext_genome:get_genome_info
May-11 01:28:32.138 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:orthology_plane:setup_ext_genome:get_genome_info
May-11 01:28:32.138 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.138 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.141 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:orthology_plane:setup_ext_proteins:convert_proteins
May-11 01:28:32.141 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:orthology_plane:setup_ext_proteins:convert_proteins
May-11 01:28:32.141 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.141 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.144 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem,sqlite3` for process with name egapx:annot_proc_plane:orthology_plane:get_prot_ref_ids
May-11 01:28:32.144 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem,sqlite3` for process with name egapx:annot_proc_plane:orthology_plane:get_prot_ref_ids
May-11 01:28:32.144 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.144 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.147 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:orthology_plane:extract_products_from_models:run_extract_products_from_models
May-11 01:28:32.147 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:orthology_plane:extract_products_from_models:run_extract_products_from_models
May-11 01:28:32.147 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.147 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.151 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `multi_cpu,med_mem` for process with name egapx:annot_proc_plane:orthology_plane:diamond_orthology:run_diamond_egap
May-11 01:28:32.151 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_cpu` matches labels `multi_cpu,med_mem` for process with name egapx:annot_proc_plane:orthology_plane:diamond_orthology:run_diamond_egap
May-11 01:28:32.152 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.152 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.156 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:orthology_plane:find_orthologs:run_find_orthologs
May-11 01:28:32.156 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:orthology_plane:find_orthologs:run_find_orthologs
May-11 01:28:32.156 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.156 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.161 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `multi_cpu,small_mem` for process with name egapx:annot_proc_plane:locus_track:run_locus_track
May-11 01:28:32.161 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_cpu` matches labels `multi_cpu,small_mem` for process with name egapx:annot_proc_plane:locus_track:run_locus_track
May-11 01:28:32.161 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.161 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.164 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:locus_link:run_locus_link
May-11 01:28:32.164 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:locus_link:run_locus_link
May-11 01:28:32.165 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.165 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.173 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:final_asn_markup:final_asn
May-11 01:28:32.174 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:final_asn_markup:final_asn
May-11 01:28:32.174 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.174 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.179 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:generate_fasta_from_annots:gnomon_asn2fasta
May-11 01:28:32.179 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:generate_fasta_from_annots:gnomon_asn2fasta
May-11 01:28:32.180 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.180 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.182 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:annotwriter:run_annotwriter
May-11 01:28:32.182 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:annot_proc_plane:annotwriter:run_annotwriter
May-11 01:28:32.182 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.182 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.185 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:convert_annotations:run_converter
May-11 01:28:32.185 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:convert_annotations:run_converter
May-11 01:28:32.186 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.186 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.189 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:small_mem` matches labels `single_cpu,small_mem` for process with name egapx:convert_summary_files:run_convert_summary_files
May-11 01:28:32.189 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:single_cpu` matches labels `single_cpu,small_mem` for process with name egapx:convert_summary_files:run_convert_summary_files
May-11 01:28:32.189 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.189 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.192 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:med_mem` matches labels `multi_cpu,med_mem` for process with name egapx:busco:run_busco
May-11 01:28:32.192 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:multi_cpu` matches labels `multi_cpu,med_mem` for process with name egapx:busco:run_busco
May-11 01:28:32.192 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.192 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.195 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
May-11 01:28:32.195 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
May-11 01:28:32.198 [main] DEBUG nextflow.Session - Workflow process names [dsl2]: egapx:rnaseq_short_plane:bam_strandedness:rnaseq_divide_by_strandedness, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_wnode:annot, final_asn, egapx:target_proteins_plane:miniprot:run_miniprot, prot_gnomon_prepare_p, egapx:winmask_plane:prepare_masks:combine_blast_db_alt_softmask, egapx:rnaseq_short_plane:bam_bin_and_sort:merge_prepare, run_extract_products_from_models, convert, egapx:annot_proc_plane:orthology_plane:setup_ext_genome:get_genome_info, annot, egapx:rnaseq_short_plane:bam2asn:convert, gnomon_summary, egapx:gnomon_plane:best_protein_hits:run_protein_filter_replacement, generate_jobs, run_prosplign_prepare, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:generate_jobs, run_chainer, run_fetch_sra_fasta, merge, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:run_gpx_make_outputs, run_convert_summary_files, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:run_gpx_make_outputs, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_wnode:gpx_qsubmit, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:generate_jobs, annot_builder_run, egapx:gnomon_plane:gnomon_evidence_summary:gpx_qdump, egapx:gnomon_plane:gnomon_add_filtering_scores:gnomon_filter_models, egapx:annot_proc_plane:final_asn_markup:final_asn, run_star, convert_rfam_mask, egapx:trnascan_plane:prime_cache, trnascan_dump, gnomon_filter_models, egapx:gnomon_plane:gnomon_align_sort:run_align_sort, egapx:gnomon_plane:fetch_swiss_prot_asn, gpx_qdump, egapx:gnomon_plane:gnomon_wnode:annot, egapx:gnomon_plane:gnomon_evidence_summary:create_reports, combine_blast_db, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:run_chainer, run_busco, rename_fasta_ids, gpx_make_outputs, egapx:annot_proc_plane:locus_track:run_locus_track, egapx:winmask_plane:gc_makeblastdb:run_gc_makeblastdb, run_prosplign_wnode, run_gc_makeblastdb, run_paf2asn, egapx:winmask_plane:prepare_masks:combine_blast_db_softmask, egapx:gnomon_plane:gnomon_wnode:gpx_qsubmit, egapx:gnomon_plane:chainer:run_chainer, egapx:gnomon_plane:chainer:generate_jobs, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:run_chainer, convert_mask, egapx:winmask_plane:winmask_wnode:gpx_make_outputs, egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin, split_fasta_files, align_sort, trnascan_wnode, egapx:gnomon_plane:diamond_worker:run_diamond_egap, cmsearch_wnode, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:run_chainer, run_find_orthologs, convert_softmask, egapx:gnomon_plane:gnomon_evidence_summary:gpx_qsubmit, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:run_chainer, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_wnode:gpx_qdump, egapx:annot_proc_plane:orthology_plane:fetch_ortholog_references, egapx:annot_proc_plane:orthology_plane:extract_products_from_models:run_extract_products_from_models, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_wnode:gpx_qdump, align_filter, run_diamond_egap, run_align_sort, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_wnode:annot, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:generate_jobs, get_genome_info, egapx:winmask_plane:prepare_masks:convert_softmask, egapx:target_proteins_plane:best_aligned_prot:run_best_aligned_prot, egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta, egapx:winmask_plane:make_winmask_stats:run_winmask_stats, run_winmask_wnode, egapx:annot_proc_plane:gnomon_biotype:run_gnomon_biotype, egapx:winmask_plane:winmask_wnode:gpx_qsubmit, egapx:gnomon_plane:gnomon_evidence_summary:generate_scaffolds, egapx:winmask_plane:winmask_wnode:run_winmask_wnode, egapx:winmask_plane:prepare_masks:convert_rfam_mask, egapx:target_proteins_plane:align_sort_sa:run_align_sort, egapx:convert_summary_files:run_convert_summary_files, gpx_qsubmit, get_prot_ref_ids, gpx_qdump_and_annot_merge, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_wnode:gpx_qdump, egapx:annot_proc_plane:orthology_plane:get_prot_ref_ids, convert_proteins, minimap2_wnode_fasta, run_rnaseq_collapse, bam_bin, combine_blast_db_alt_softmask, prime_cache, get_swiss_prot_ids, read_sra_file, egapx:annot_proc_plane:orthology_plane:find_orthologs:run_find_orthologs, run_gpx_make_outputs, gnomon_report, create_reports, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_training:run_gnomon_training, egapx:cmsearch_plane:gpx_qdump_and_annot_merge, egapx:annot_proc_plane:orthology_plane:setup_ext_proteins:convert_proteins, egapx:trnascan_plane:trnascan_dump, print_fake_lxr_data, combine_blast_db_softmask, run_align_filter_sa, run_tblastn_wnode, fetch_swiss_prot_asn, run_locus_link, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:run_gpx_make_outputs, egapx:target_proteins_plane:miniprot:split_proteins, egapx:rnaseq_long_plane:rename_fasta_ids, egapx:winmask_plane:winmask_wnode:combine_blast_db, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_wnode:annot, export, run_winmask_stats, calc_assembly_sizes, run_annotwriter, egapx:winmask_plane:mask_assm_stats:run_mask_assm_stats, egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse, run_mask_assm_stats, gnomon_asn2fasta, fetch_ortholog_references, egapx:gnomon_plane:gnomon_evidence_summary:gnomon_summary, egapx:winmask_plane:prepare_masks:gp_annot_format, egapx:annot_proc_plane:annot_builder:annot_builder_run, split_proteins, run_minimap2_index, egapx:busco:run_busco, egapx:target_proteins_plane:align_filter_sa:run_align_filter_sa, generate_scaffolds, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:generate_jobs, multireader, egapx:rnaseq_short_plane:bam_bin_and_sort:calc_assembly_sizes, egapx:rnaseq_short_plane:bam_bin_and_sort:merge, minimap2_wnode, run_protein_filter_replacement, run_gnomon_training, egapx:rnaseq_long_plane:minimap2_fasta:gpx_qdump, egapx:cmsearch_plane:prime_cache, egapx:trnascan_plane:trnascan_wnode, egapx:cmsearch_plane:cmsearch_wnode, egapx:annot_proc_plane:print_fake_lxr_data, egapx:rnaseq_short_plane:star:run_star, egapx:target_proteins_plane:paf2asn:run_paf2asn, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_training:run_gnomon_training, run_gnomon_biotype, egapx:rnaseq_short_plane:rnaseq_collapse:run_gpx_make_outputs, egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files, egapx:gnomon_plane:get_swiss_prot_ids, egapx:setup_proteins:convert_proteins, egapx:annot_proc_plane:orthology_plane:diamond_orthology:run_diamond_egap, process_no_training, run_locus_track, rnaseq_divide_by_strandedness, egapx:rnaseq_short_plane:rnaseq_collapse:generate_jobs, egapx:gnomon_plane:gnomon_wnode:gpx_qdump, merge_prepare, run_converter, egapx:annot_proc_plane:annotwriter:run_annotwriter, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_wnode:annot, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_training:run_gnomon_training, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_wnode:gpx_qdump, clean_fasta_ids, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_training:run_gnomon_training, run_miniprot, run_best_aligned_prot, egapx:rnaseq_short_plane:star_index:build_index, egapx:gnomon_plane:chainer:run_gpx_make_outputs, egapx:gnomon_plane:gnomon_evidence_summary:gnomon_report, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:run_gpx_make_outputs, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_wnode:gpx_qsubmit, egapx:rnaseq_long_plane:filter_est_align:align_sort, egapx:annot_proc_plane:generate_fasta_from_annots:gnomon_asn2fasta, gp_annot_format, egapx:rnaseq_long_plane:filter_est_align:align_filter, egapx:rnaseq_long_plane:minimap2_index:run_minimap2_index, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_wnode:gpx_qsubmit, egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_wnode:gpx_qsubmit, egapx:setup_genome:get_genome_info, build_index, egapx:annot_proc_plane:locus_link:run_locus_link, egapx:gnomon_plane:prot_gnomon_prepare:prot_gnomon_prepare_p, egapx:convert_annotations:run_converter
May-11 01:28:32.199 [main] DEBUG nextflow.Session - Igniting dataflow network (115)
May-11 01:28:32.199 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:setup_genome:get_genome_info
May-11 01:28:32.200 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:winmask_plane:make_winmask_stats:run_winmask_stats
May-11 01:28:32.200 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:winmask_plane:winmask_wnode:gpx_qsubmit
May-11 01:28:32.200 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:winmask_plane:winmask_wnode:run_winmask_wnode
May-11 01:28:32.200 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:winmask_plane:winmask_wnode:gpx_make_outputs
May-11 01:28:32.200 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:winmask_plane:winmask_wnode:combine_blast_db
May-11 01:28:32.201 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:winmask_plane:prepare_masks:gp_annot_format
May-11 01:28:32.211 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:winmask_plane:prepare_masks:convert_rfam_mask
May-11 01:28:32.211 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:winmask_plane:prepare_masks:combine_blast_db_softmask
May-11 01:28:32.211 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:winmask_plane:prepare_masks:combine_blast_db_alt_softmask
May-11 01:28:32.211 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:winmask_plane:prepare_masks:convert_softmask
May-11 01:28:32.211 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:winmask_plane:gc_makeblastdb:run_gc_makeblastdb
May-11 01:28:32.211 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:winmask_plane:mask_assm_stats:run_mask_assm_stats
May-11 01:28:32.212 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:setup_proteins:convert_proteins
May-11 01:28:32.212 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:target_proteins_plane:miniprot:split_proteins
May-11 01:28:32.212 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:target_proteins_plane:miniprot:run_miniprot
May-11 01:28:32.212 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:target_proteins_plane:paf2asn:run_paf2asn
May-11 01:28:32.212 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:target_proteins_plane:best_aligned_prot:run_best_aligned_prot
May-11 01:28:32.212 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:target_proteins_plane:align_filter_sa:run_align_filter_sa
May-11 01:28:32.212 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:target_proteins_plane:align_sort_sa:run_align_sort
May-11 01:28:32.213 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:rnaseq_short_plane:star_index:build_index
May-11 01:28:32.213 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:rnaseq_short_plane:star:run_star
May-11 01:28:32.213 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:rnaseq_short_plane:bam_strandedness:rnaseq_divide_by_strandedness
May-11 01:28:32.213 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:rnaseq_short_plane:bam_bin_and_sort:calc_assembly_sizes
May-11 01:28:32.214 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin
May-11 01:28:32.214 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge_prepare
May-11 01:28:32.214 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge
May-11 01:28:32.214 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:rnaseq_short_plane:bam2asn:convert
May-11 01:28:32.214 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:rnaseq_short_plane:rnaseq_collapse:generate_jobs
May-11 01:28:32.214 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse
May-11 01:28:32.214 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:rnaseq_short_plane:rnaseq_collapse:run_gpx_make_outputs
May-11 01:28:32.214 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:rnaseq_long_plane:minimap2_index:run_minimap2_index
May-11 01:28:32.214 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:rnaseq_long_plane:rename_fasta_ids
May-11 01:28:32.215 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files
May-11 01:28:32.215 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta
May-11 01:28:32.215 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:rnaseq_long_plane:minimap2_fasta:gpx_qdump
May-11 01:28:32.215 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:rnaseq_long_plane:filter_est_align:align_filter
May-11 01:28:32.215 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:rnaseq_long_plane:filter_est_align:align_sort
May-11 01:28:32.215 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_align_sort:run_align_sort
May-11 01:28:32.215 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:generate_jobs
May-11 01:28:32.215 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:run_chainer
May-11 01:28:32.215 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:run_gpx_make_outputs
May-11 01:28:32.215 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_wnode:gpx_qsubmit
May-11 01:28:32.215 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_wnode:annot
May-11 01:28:32.215 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_wnode:gpx_qdump
May-11 01:28:32.215 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_training:run_gnomon_training
May-11 01:28:32.215 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:generate_jobs
May-11 01:28:32.216 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:run_chainer
May-11 01:28:32.216 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:run_gpx_make_outputs
May-11 01:28:32.216 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_wnode:gpx_qsubmit
May-11 01:28:32.216 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_wnode:annot
May-11 01:28:32.216 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_wnode:gpx_qdump
May-11 01:28:32.216 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_training:run_gnomon_training
May-11 01:28:32.216 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:generate_jobs
May-11 01:28:32.216 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:run_chainer
May-11 01:28:32.216 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:run_gpx_make_outputs
May-11 01:28:32.216 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_wnode:gpx_qsubmit
May-11 01:28:32.217 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_wnode:annot
May-11 01:28:32.217 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_wnode:gpx_qdump
May-11 01:28:32.217 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_training:run_gnomon_training
May-11 01:28:32.218 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:generate_jobs
May-11 01:28:32.218 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:run_chainer
May-11 01:28:32.218 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:run_gpx_make_outputs
May-11 01:28:32.218 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_wnode:gpx_qsubmit
May-11 01:28:32.219 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_wnode:annot
May-11 01:28:32.219 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_wnode:gpx_qdump
May-11 01:28:32.219 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_training:run_gnomon_training
May-11 01:28:32.219 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:chainer:generate_jobs
May-11 01:28:32.219 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:chainer:run_chainer
May-11 01:28:32.219 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:chainer:run_gpx_make_outputs
May-11 01:28:32.219 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_wnode:gpx_qsubmit
May-11 01:28:32.219 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_wnode:annot
May-11 01:28:32.219 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_wnode:gpx_qdump
May-11 01:28:32.219 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_evidence_summary:generate_scaffolds
May-11 01:28:32.219 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_evidence_summary:gpx_qsubmit
May-11 01:28:32.220 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_evidence_summary:gnomon_report
May-11 01:28:32.220 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_evidence_summary:gpx_qdump
May-11 01:28:32.220 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_evidence_summary:create_reports
May-11 01:28:32.220 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_evidence_summary:gnomon_summary
May-11 01:28:32.220 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:fetch_swiss_prot_asn
May-11 01:28:32.220 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:get_swiss_prot_ids
May-11 01:28:32.220 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:prot_gnomon_prepare:prot_gnomon_prepare_p
May-11 01:28:32.221 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:diamond_worker:run_diamond_egap
May-11 01:28:32.221 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:best_protein_hits:run_protein_filter_replacement
May-11 01:28:32.221 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:gnomon_plane:gnomon_add_filtering_scores:gnomon_filter_models
May-11 01:28:32.221 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:cmsearch_plane:prime_cache
May-11 01:28:32.221 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:cmsearch_plane:cmsearch_wnode
May-11 01:28:32.221 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:cmsearch_plane:cmsearch_wnode
May-11 01:28:32.221 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:cmsearch_plane:gpx_qdump_and_annot_merge
May-11 01:28:32.222 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:trnascan_plane:prime_cache
May-11 01:28:32.222 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:trnascan_plane:trnascan_wnode
May-11 01:28:32.223 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:trnascan_plane:trnascan_wnode
May-11 01:28:32.223 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:trnascan_plane:trnascan_dump
May-11 01:28:32.223 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:annot_proc_plane:gnomon_biotype:run_gnomon_biotype
May-11 01:28:32.223 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:annot_proc_plane:annot_builder:annot_builder_run
May-11 01:28:32.223 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:annot_proc_plane:print_fake_lxr_data
May-11 01:28:32.224 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:annot_proc_plane:orthology_plane:fetch_ortholog_references
May-11 01:28:32.224 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:annot_proc_plane:orthology_plane:setup_ext_genome:get_genome_info
May-11 01:28:32.224 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:annot_proc_plane:orthology_plane:setup_ext_proteins:convert_proteins
May-11 01:28:32.224 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:annot_proc_plane:orthology_plane:get_prot_ref_ids
May-11 01:28:32.225 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:annot_proc_plane:orthology_plane:extract_products_from_models:run_extract_products_from_models
May-11 01:28:32.225 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:annot_proc_plane:orthology_plane:diamond_orthology:run_diamond_egap
May-11 01:28:32.225 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:annot_proc_plane:orthology_plane:find_orthologs:run_find_orthologs
May-11 01:28:32.225 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:annot_proc_plane:locus_track:run_locus_track
May-11 01:28:32.225 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:annot_proc_plane:locus_link:run_locus_link
May-11 01:28:32.225 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:annot_proc_plane:final_asn_markup:final_asn
May-11 01:28:32.226 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:annot_proc_plane:generate_fasta_from_annots:gnomon_asn2fasta
May-11 01:28:32.226 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:annot_proc_plane:annotwriter:run_annotwriter
May-11 01:28:32.226 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:convert_annotations:run_converter
May-11 01:28:32.226 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:convert_summary_files:run_convert_summary_files
May-11 01:28:32.226 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > egapx:busco:run_busco
May-11 01:28:32.226 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > export
May-11 01:28:32.227 [main] DEBUG nextflow.script.ScriptRunner - Parsed script files:
  Script_b4a94586795c11c6: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/ui.nf
  Script_29a877b5c8702190: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./busco/main.nf
  Script_129b5c0b6195b348: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/main.nf
  Script_f3b69a1accf40840: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./target_proteins/./../../../../nf/subworkflows/ncbi/target_proteins/align_filter_sa/main.nf
  Script_be74dd43b887e5ee: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./gnomon/main.nf
  Script_4151585953776832: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./rnaseq_long/./../setup/main.nf
  Script_cd96f4d640c5255d: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./rnaseq_short/main.nf
  Script_c54f127d6df8b776: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./winmask/./../../../../nf/subworkflows/ncbi/winmask/mask_assm_stats/main.nf
  Script_d700526447ad959b: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./gnomon/./gnomon_align_sort/main.nf
  Script_4a967d82e432b143: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./gnomon/../../../../nf/subworkflows/ncbi/gnomon/best_protein_hits/main.nf
  Script_1e278f443a0108b6: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./winmask/./../../../../nf/subworkflows/ncbi/winmask/prepare_masks/main.nf
  Script_7ae6504a32156c01: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./target_proteins/./../../../../nf/subworkflows/ncbi/target_proteins/tblastn_align/main.nf
  Script_2517f6745829d2ae: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./annot_proc/../../../../nf/subworkflows/ncbi/annot_proc/gnomon_biotype/main.nf
  Script_076c9890aefa5154: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./gnomon/../../../../nf/subworkflows/ncbi/gnomon/prot_gnomon_prepare/main.nf
  Script_cf987cb9eb518a0e: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./target_proteins/./../../../../nf/subworkflows/ncbi/target_proteins/miniprot/main.nf
  Script_9229abc7cbaa717a: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./annot_proc/../../../../nf/subworkflows/ncbi/annot_proc/annot_builder/main.nf
  Script_cad08e2a1701718c: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./winmask/./../../../../nf/subworkflows/ncbi/winmask/make_winmask_stats/main.nf
  Script_dd497ea1430bdc7d: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./winmask/./../../../../nf/subworkflows/ncbi/winmask/winmask_wnode/main.nf
  Script_368eff879601cb6d: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./annot_proc/../../../../nf/subworkflows/ncbi/annot_proc/locus_track/main.nf
  Script_1f4c3b0ae4ca4ac7: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./rnaseq_short/./../../../../nf/subworkflows/ncbi/rnaseq_short/bam_strandedness/main.nf
  Script_15a7cf832565939e: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./rnaseq_long/main.nf
  Script_47b7cded255dcd9a: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./trna_scan/main.nf
  Script_8bc79f143d776a56: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./gnomon/./../../../../nf/subworkflows/ncbi/gnomon/chainer_wnode/main.nf
  Script_beaa2555624c8947: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./rnaseq_short/./../../../../nf/subworkflows/ncbi/rnaseq_short/convert_from_bam/main.nf
  Script_a3a3a1cc8f176f39: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./orthology/../shared/diamond/main.nf
  Script_6fecaa5e28938db6: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./rnaseq_long/./../../../../nf/subworkflows/ncbi/rnaseq_long/filter_est_align/main.nf
  Script_7f2ef7e694688822: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./winmask/./../../../../nf/subworkflows/ncbi/winmask/gc_makeblastdb/main.nf
  Script_5580c6bae66ff84b: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./gnomon/../../../../nf/subworkflows/ncbi/gnomon/diamond_identify/main.nf
  Script_cdeb1bf6e77808ec: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./gnomon/./../../../../nf/subworkflows/ncbi/gnomon-training-iteration/gnomon_training_iterations/./../utilities.nf
  Script_ecdb234f5b7cb350: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./target_proteins/./../../../../nf/subworkflows/ncbi/target_proteins/prosplign_wnode/main.nf
  Script_650452accd50f4da: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./annot_proc/../../../../nf/subworkflows/ncbi/annot_proc/annotwriter/main.nf
  Script_863d7cec57696475: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./default/convert_annotations/main.nf
  Script_982840f80201c0af: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./annot_proc/../../../../nf/subworkflows/ncbi/annot_proc/locus_link/main.nf
  Script_25019b11fd7f2cb1: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./winmask/main.nf
  Script_ac2e8fe98b00799a: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./annot_proc/../../../../nf/subworkflows/ncbi/annot_proc/fasta_from_annots/main.nf
  Script_6d9f412674d4a989: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./annot_proc/../orthology/../../../../nf/subworkflows/ncbi/orthology/extract_products_from_models/../../utilities.nf
  Script_fc689e0a21299fb6: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./target_proteins/./../../../../nf/subworkflows/ncbi/target_proteins/../default/align_sort_sa/main.nf
  Script_f2fc1c542ccf0fd2: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./rnaseq_short/./../../../../nf/subworkflows/ncbi/rnaseq_short/star_wnode/main.nf
  Script_20d601e3779f36f7: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./gnomon/./../../../../nf/subworkflows/ncbi/gnomon-training-iteration/gnomon_training_iterations/main.nf
  Script_72bd0d38916c9570: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./rnaseq_short/./../../../../nf/subworkflows/ncbi/rnaseq_short/star_index/main.nf
  Script_ff2befc70e1d01f9: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./annot_proc/main.nf
  Script_60d5c23c72b498ac: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./default/convert_summary_files/main.nf
  Script_d0cdd83934a31495: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./gnomon/./../../../../nf/subworkflows/ncbi/gnomon/gnomon_evidence_summary/main.nf
  Script_5e517b7b470c323e: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./cmsearch/main.nf
  Script_18986970c82b6b48: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./rnaseq_long/./../../../../nf/subworkflows/ncbi/rnaseq_long/minimap2_wnode/main.nf
  Script_87dcb68d45776b94: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./target_proteins/main.nf
  Script_7f57dc13c6681cbf: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./target_proteins/./../../../../nf/subworkflows/ncbi/target_proteins/prosplign_prepare/main.nf
  Script_c7105995bbad9ce5: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./orthology/../../../../nf/subworkflows/ncbi/orthology/extract_products_from_models/main.nf
  Script_38f77cb2d0ec38cf: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./orthology/./find_orthologs/main.nf
  Script_57ecd14509312a1d: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./gnomon/./../../../../nf/subworkflows/ncbi/gnomon/gnomon_add_filtering_scores/main.nf
  Script_b797c6fe1478d81b: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./target_proteins/./../../../../nf/subworkflows/ncbi/target_proteins/paf2asn/main.nf
  Script_fc85ffecc11a85de: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./orthology/main.nf
  Script_546bea70a1bdcf0f: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./target_proteins/./../../../../nf/subworkflows/ncbi/target_proteins/best_aligned_prot/main.nf
  Script_e3c2414e2d0f21c2: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./rnaseq_short/./../../../../nf/subworkflows/ncbi/rnaseq_short/bam_bin_and_sort/main.nf
  Script_ea7da416e362dd74: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./gnomon/./../../../../nf/subworkflows/ncbi/gnomon-training-iteration/gnomon_training_iterations/./../../gnomon/gnomon_training/main.nf
  Script_6863f9a7b602b3f9: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./rnaseq_long/./../../../../nf/subworkflows/ncbi/rnaseq_short/fetch_sra_fasta/main.nf
  Script_328761c30718694a: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./rnaseq_long/./../../../../nf/subworkflows/ncbi/rnaseq_long/minimap2_index/main.nf
  Script_5766e4920088b21b: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./orthology/../../../../nf/subworkflows/ncbi/orthology/diamond_orthology/main.nf
  Script_8aa851f62510f716: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./annot_proc/../../../../nf/subworkflows/ncbi/annot_proc/final_asn_markup/main.nf
  Script_731b2372a6e6a7eb: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./gnomon/./../../../../nf/subworkflows/ncbi/gnomon-training-iteration/gnomon_training_iterations/./../../gnomon/gnomon_wnode/main.nf
  Script_193eb991e2b152f8: /pentastor/home/linjinbin/biosoft/egapx-0.5.2/nf/./subworkflows/ncbi/./rnaseq_short/./../../../../nf/subworkflows/ncbi/rnaseq_short/rnaseq_collapse/main.nf
May-11 01:28:32.227 [main] DEBUG nextflow.script.ScriptRunner - > Awaiting termination 
May-11 01:28:32.227 [main] DEBUG nextflow.Session - Session await
May-11 01:28:32.345 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:32.346 [Task submitter] INFO  nextflow.Session - [e4/1a001e] Submitted process > egapx:annot_proc_plane:print_fake_lxr_data
May-11 01:28:39.500 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.500 [Task submitter] INFO  nextflow.Session - [63/20633a] Submitted process > egapx:winmask_plane:prepare_masks:gp_annot_format
May-11 01:28:39.503 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.504 [Task submitter] INFO  nextflow.Session - [1a/4b68a6] Submitted process > egapx:annot_proc_plane:orthology_plane:fetch_ortholog_references
May-11 01:28:39.507 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.508 [Task submitter] INFO  nextflow.Session - [36/f8b2c8] Submitted process > egapx:setup_proteins:convert_proteins
May-11 01:28:39.510 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.510 [Task submitter] INFO  nextflow.Session - [dc/20b22d] Submitted process > egapx:gnomon_plane:fetch_swiss_prot_asn
May-11 01:28:39.514 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.514 [Task submitter] INFO  nextflow.Session - [6c/c530b2] Submitted process > egapx:rnaseq_long_plane:rename_fasta_ids (4)
May-11 01:28:39.516 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.516 [Task submitter] INFO  nextflow.Session - [a0/e2646d] Submitted process > egapx:rnaseq_long_plane:rename_fasta_ids (2)
May-11 01:28:39.519 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.519 [Task submitter] INFO  nextflow.Session - [6b/a19bea] Submitted process > egapx:rnaseq_long_plane:rename_fasta_ids (6)
May-11 01:28:39.521 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.522 [Task submitter] INFO  nextflow.Session - [d2/031913] Submitted process > egapx:rnaseq_long_plane:rename_fasta_ids (1)
May-11 01:28:39.524 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.524 [Task submitter] INFO  nextflow.Session - [d6/c8e2a2] Submitted process > egapx:rnaseq_long_plane:rename_fasta_ids (3)
May-11 01:28:39.527 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.527 [Task submitter] INFO  nextflow.Session - [c9/5b8665] Submitted process > egapx:rnaseq_long_plane:rename_fasta_ids (7)
May-11 01:28:39.530 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.530 [Task submitter] INFO  nextflow.Session - [3b/8e9ea2] Submitted process > egapx:rnaseq_long_plane:rename_fasta_ids (8)
May-11 01:28:39.533 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.533 [Task submitter] INFO  nextflow.Session - [c3/188168] Submitted process > egapx:rnaseq_long_plane:rename_fasta_ids (10)
May-11 01:28:39.538 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.538 [Task submitter] INFO  nextflow.Session - [89/624659] Submitted process > egapx:rnaseq_long_plane:rename_fasta_ids (5)
May-11 01:28:39.541 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.541 [Task submitter] INFO  nextflow.Session - [39/fd8ea1] Submitted process > egapx:rnaseq_long_plane:rename_fasta_ids (13)
May-11 01:28:39.545 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.545 [Task submitter] INFO  nextflow.Session - [c7/d85669] Submitted process > egapx:setup_genome:get_genome_info
May-11 01:28:39.548 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.548 [Task submitter] INFO  nextflow.Session - [0e/b80892] Submitted process > egapx:rnaseq_long_plane:rename_fasta_ids (15)
May-11 01:28:39.551 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.551 [Task submitter] INFO  nextflow.Session - [b9/78c590] Submitted process > egapx:rnaseq_long_plane:rename_fasta_ids (14)
May-11 01:28:39.556 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.556 [Task submitter] INFO  nextflow.Session - [0a/300721] Submitted process > egapx:rnaseq_long_plane:rename_fasta_ids (9)
May-11 01:28:39.560 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.561 [Task submitter] INFO  nextflow.Session - [ec/86a94d] Submitted process > egapx:rnaseq_long_plane:rename_fasta_ids (12)
May-11 01:28:39.564 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:39.564 [Task submitter] INFO  nextflow.Session - [43/d89010] Submitted process > egapx:rnaseq_long_plane:rename_fasta_ids (11)
May-11 01:28:43.920 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 15; name: egapx:annot_proc_plane:print_fake_lxr_data; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e4/1a001efd4301556ba43e139b44376d]
May-11 01:28:49.663 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 12; name: egapx:rnaseq_long_plane:rename_fasta_ids (8); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3b/8e9ea26b43b636c36eab3badb321eb]
May-11 01:28:49.781 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 11; name: egapx:rnaseq_long_plane:rename_fasta_ids (7); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c9/5b8665dbf8d0bfb3f75d1030c67ca7]
May-11 01:28:49.843 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 3; name: egapx:winmask_plane:prepare_masks:gp_annot_format; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/63/20633a9b74728e8dd2325b937c0d52]
May-11 01:28:49.851 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 10; name: egapx:rnaseq_long_plane:rename_fasta_ids (6); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6b/a19bea01c1de14f6c31e38f29bd0da]
May-11 01:28:49.854 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:49.854 [Task submitter] INFO  nextflow.Session - [e1/6fafd3] Submitted process > egapx:winmask_plane:prepare_masks:convert_rfam_mask
May-11 01:28:49.856 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1; name: egapx:rnaseq_long_plane:rename_fasta_ids (1); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d2/03191312ef5b59b9f739915466224b]
May-11 01:28:59.168 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 6; name: egapx:rnaseq_long_plane:rename_fasta_ids (3); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d6/c8e2a2d96fe44011fb25da12015777]
May-11 01:28:59.171 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 14; name: egapx:rnaseq_long_plane:rename_fasta_ids (10); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c3/1881689d272b7c4c29c2e63cc77bf7]
May-11 01:28:59.173 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 9; name: egapx:rnaseq_long_plane:rename_fasta_ids (5); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/89/624659f5fd9485bc3c87932a6f8241]
May-11 01:28:59.176 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 19; name: egapx:rnaseq_long_plane:rename_fasta_ids (13); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/39/fd8ea116eafb1bfbc2cf6b9e4a0499]
May-11 01:28:59.178 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 4; name: egapx:setup_genome:get_genome_info; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c7/d856698cb75fd7f22b98309c8e7e88]
May-11 01:28:59.195 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 21; name: egapx:rnaseq_long_plane:rename_fasta_ids (15); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0e/b8089232e8d18b1c5a70a66837849c]
May-11 01:28:59.199 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 20; name: egapx:rnaseq_long_plane:rename_fasta_ids (14); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b9/78c590f63a726a51e1332a350f0c33]
May-11 01:28:59.202 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 13; name: egapx:rnaseq_long_plane:rename_fasta_ids (9); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0a/300721715c34a9e6408d6dd8a2181e]
May-11 01:28:59.204 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 18; name: egapx:rnaseq_long_plane:rename_fasta_ids (12); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ec/86a94d2a600fcab6e4cab2d4982c64]
May-11 01:28:59.206 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 16; name: egapx:rnaseq_long_plane:rename_fasta_ids (11); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/43/d8901030259b95bad3b7995747fd8b]
May-11 01:28:59.209 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 7; name: egapx:gnomon_plane:fetch_swiss_prot_asn; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/dc/20b22de0b7a07c09b348bf820aacbf]
May-11 01:28:59.211 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 8; name: egapx:rnaseq_long_plane:rename_fasta_ids (4); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6c/c530b2310974dfc0c3022c04d460fd]
May-11 01:28:59.213 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 5; name: egapx:rnaseq_long_plane:rename_fasta_ids (2); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a0/e2646d62fb84d736b1520aaeddeb7b]
May-11 01:28:59.214 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:59.214 [Task submitter] INFO  nextflow.Session - [e2/805bd2] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (1)
May-11 01:28:59.217 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 22; name: egapx:winmask_plane:prepare_masks:convert_rfam_mask; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e1/6fafd3cfd666beafbc58cbe302775d]
May-11 01:28:59.220 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:59.221 [Task submitter] INFO  nextflow.Session - [e2/2b0d1e] Submitted process > egapx:winmask_plane:make_winmask_stats:run_winmask_stats
May-11 01:28:59.227 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:59.228 [Task submitter] INFO  nextflow.Session - [98/79fabd] Submitted process > egapx:winmask_plane:winmask_wnode:gpx_qsubmit
May-11 01:28:59.262 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:59.263 [Task submitter] INFO  nextflow.Session - [8a/dd1ea6] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (6)
May-11 01:28:59.269 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:59.269 [Task submitter] INFO  nextflow.Session - [15/eab3a6] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (7)
May-11 01:28:59.273 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:59.274 [Task submitter] INFO  nextflow.Session - [0b/07d7c2] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (5)
May-11 01:28:59.280 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:59.281 [Task submitter] INFO  nextflow.Session - [00/b8ce3f] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (4)
May-11 01:28:59.285 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:59.285 [Task submitter] INFO  nextflow.Session - [02/cb1372] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (8)
May-11 01:28:59.289 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:59.289 [Task submitter] INFO  nextflow.Session - [b2/42a03f] Submitted process > egapx:rnaseq_long_plane:minimap2_index:run_minimap2_index
May-11 01:28:59.293 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:59.293 [Task submitter] INFO  nextflow.Session - [93/2d5176] Submitted process > egapx:trnascan_plane:prime_cache
May-11 01:28:59.296 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:59.296 [Task submitter] INFO  nextflow.Session - [b6/fed906] Submitted process > egapx:cmsearch_plane:prime_cache
May-11 01:28:59.300 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:59.300 [Task submitter] INFO  nextflow.Session - [de/3d6b6a] Submitted process > egapx:rnaseq_short_plane:star_index:build_index
May-11 01:28:59.304 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:59.304 [Task submitter] INFO  nextflow.Session - [80/36e5cf] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (3)
May-11 01:28:59.308 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:59.308 [Task submitter] INFO  nextflow.Session - [a7/d24b47] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (2)
May-11 01:28:59.311 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:59.311 [Task submitter] INFO  nextflow.Session - [89/d353f4] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (10)
May-11 01:28:59.315 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:59.315 [Task submitter] INFO  nextflow.Session - [7b/3b36f7] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (13)
May-11 01:28:59.372 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:28:59.372 [Task submitter] INFO  nextflow.Session - [da/5c07ec] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (15)
May-11 01:29:07.269 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 23; name: egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (1); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e2/805bd272ae8563aff9a18507e38194]
May-11 01:29:07.802 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:29:07.802 [Task submitter] INFO  nextflow.Session - [95/4ea9b8] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (14)
May-11 01:29:07.805 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:29:07.805 [Task submitter] INFO  nextflow.Session - [f3/fa0e73] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (9)
May-11 01:29:07.808 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:29:07.808 [Task submitter] INFO  nextflow.Session - [d8/672f90] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (12)
May-11 01:29:07.811 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:29:07.811 [Task submitter] INFO  nextflow.Session - [3e/d8f846] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (11)
May-11 01:29:07.814 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:29:07.814 [Task submitter] INFO  nextflow.Session - [6b/21a892] Submitted process > egapx:gnomon_plane:get_swiss_prot_ids
May-11 01:29:07.860 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 36; name: egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (7); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/15/eab3a651f394b75851f05005294fc9]
May-11 01:29:07.919 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 35; name: egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (6); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8a/dd1ea6bf676b3a8463d5b6730b90d6]
May-11 01:29:07.924 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 31; name: egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (2); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a7/d24b47416aa82a6d5f75f8d8ab42aa]
May-11 01:29:08.076 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 32; name: egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (3); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/80/36e5cf25d9a35b64725dfcd58bec7d]
May-11 01:29:08.153 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 33; name: egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (4); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/00/b8ce3f51b03967ae695a89a3370a22]
May-11 01:29:08.355 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 34; name: egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (5); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0b/07d7c298e713c0683e9b8bacc02741]
May-11 01:29:08.415 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 37; name: egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (8); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/02/cb137275366ec7e0d63325734600da]
May-11 01:29:08.466 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 39; name: egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (10); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/89/d353f43dc02418c0f7a9d6c214a13d]
May-11 01:29:08.579 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 42; name: egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (13); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7b/3b36f763b81c2b11e474af35439745]
May-11 01:29:08.949 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 44; name: egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (15); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/da/5c07ecb0995c292831d3aeffb72086]
May-11 01:29:08.980 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 29; name: egapx:winmask_plane:winmask_wnode:gpx_qsubmit; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/98/79fabd8811d82a2aabeb97f43dd3a2]
May-11 01:29:08.986 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 24; name: egapx:cmsearch_plane:prime_cache; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b6/fed906af41ea465db9a3ec4e23fde1]
May-11 01:29:09.091 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:29:09.092 [Task submitter] INFO  nextflow.Session - [36/1327fd] Submitted process > egapx:cmsearch_plane:cmsearch_wnode (9)
May-11 01:29:09.685 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 26; name: egapx:trnascan_plane:prime_cache; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/93/2d51769960bdb5f0f2c43eced1d215]
May-11 01:29:15.810 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 43; name: egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (14); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/95/4ea9b81a59fb85b1f2e75543617fbc]
May-11 01:29:15.812 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:29:15.812 [Task submitter] INFO  nextflow.Session - [62/660050] Submitted process > egapx:cmsearch_plane:cmsearch_wnode (11)
May-11 01:29:15.816 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 38; name: egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (9); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f3/fa0e73822a47bc96b49d7d1b8f7f5f]
May-11 01:29:15.821 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 41; name: egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (12); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d8/672f90757d21618d3f87c60c4fad22]
May-11 01:29:15.823 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:29:15.823 [Task submitter] INFO  nextflow.Session - [b7/e475e9] Submitted process > egapx:cmsearch_plane:cmsearch_wnode (2)
May-11 01:29:15.824 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 40; name: egapx:rnaseq_long_plane:minimap2_fasta:split_fasta_files (11); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3e/d8f84692280289c834ad7442adb4de]
May-11 01:29:15.827 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 27; name: egapx:rnaseq_long_plane:minimap2_index:run_minimap2_index; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b2/42a03f2d229c53a0b63207238d4312]
May-11 01:29:15.832 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:29:15.832 [Task submitter] INFO  nextflow.Session - [ef/204bf4] Submitted process > egapx:cmsearch_plane:cmsearch_wnode (12)
May-11 01:29:17.850 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 17; name: egapx:annot_proc_plane:orthology_plane:fetch_ortholog_references; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1a/4b68a6c2de1df787e8b13b4709b14b]
May-11 01:29:18.052 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:29:18.053 [Task submitter] INFO  nextflow.Session - [a7/b55e6e] Submitted process > egapx:cmsearch_plane:cmsearch_wnode (13)
May-11 01:29:19.769 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 53; name: egapx:cmsearch_plane:cmsearch_wnode (9); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/36/1327fdbd02323333e2d0dea78efebe]
May-11 01:29:21.682 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:29:21.682 [Task submitter] INFO  nextflow.Session - [5c/8bc635] Submitted process > egapx:cmsearch_plane:cmsearch_wnode (7)
May-11 01:29:21.760 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:29:21.761 [Task submitter] INFO  nextflow.Session - [67/549de1] Submitted process > egapx:annot_proc_plane:orthology_plane:setup_ext_proteins:convert_proteins
May-11 01:29:28.099 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 56; name: egapx:cmsearch_plane:cmsearch_wnode (12); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ef/204bf4142f795dff9dcc165dd9b0ee]
May-11 01:29:28.102 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:29:28.103 [Task submitter] INFO  nextflow.Session - [44/46eef6] Submitted process > egapx:cmsearch_plane:cmsearch_wnode (6)
May-11 01:29:29.532 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 28; name: egapx:winmask_plane:make_winmask_stats:run_winmask_stats; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e2/2b0d1efb0d9919c96fbb3d9fbe6d87]
May-11 01:29:29.535 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:29:29.535 [Task submitter] INFO  nextflow.Session - [fc/193278] Submitted process > egapx:annot_proc_plane:orthology_plane:setup_ext_genome:get_genome_info
May-11 01:29:30.839 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 179; name: egapx:annot_proc_plane:orthology_plane:setup_ext_proteins:convert_proteins; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/67/549de14ed01dc45280287efafb3255]
May-11 01:29:31.843 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:29:31.843 [Task submitter] INFO  nextflow.Session - [c0/7a0cf8] Submitted process > egapx:annot_proc_plane:orthology_plane:get_prot_ref_ids
May-11 01:29:34.230 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 2; name: egapx:setup_proteins:convert_proteins; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/36/f8b2c8596dab3972e33ebd21c35d21]
May-11 01:29:35.234 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:29:35.234 [Task submitter] INFO  nextflow.Session - [36/4b1d77] Submitted process > egapx:target_proteins_plane:miniprot:split_proteins
May-11 01:29:37.231 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 324; name: egapx:annot_proc_plane:orthology_plane:get_prot_ref_ids; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c0/7a0cf89c0d341390eaa2dfe491d250]
May-11 01:29:39.507 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 178; name: egapx:annot_proc_plane:orthology_plane:setup_ext_genome:get_genome_info; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fc/19327864df4e6d902ec154b040d667]
May-11 01:29:40.093 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 325; name: egapx:target_proteins_plane:miniprot:split_proteins; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/36/4b1d77d888a0db2664cff91664b751]
May-11 01:29:43.876 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 25; name: egapx:rnaseq_short_plane:star_index:build_index; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/de/3d6b6a1cfef80e238e56946f41293b]
May-11 01:29:43.879 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:29:43.879 [Task submitter] INFO  nextflow.Session - [73/7137c0] Submitted process > egapx:cmsearch_plane:cmsearch_wnode (8)
May-11 01:30:15.576 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 30; name: egapx:gnomon_plane:get_swiss_prot_ids; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6b/21a89298125b3b95891c11ba2eb539]
May-11 01:33:30.880 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 55; name: egapx:cmsearch_plane:cmsearch_wnode (11); status: RUNNING; exit: -; error: -; workDir: Ath_work2/62/660050c2d80d8b08e91f585b18f12c]
~> TaskHandler[id: 46; name: egapx:cmsearch_plane:cmsearch_wnode (2); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b7/e475e91bf568b5ba14f5bbe2157480]
~> TaskHandler[id: 57; name: egapx:cmsearch_plane:cmsearch_wnode (13); status: RUNNING; exit: -; error: -; workDir: Ath_work2/a7/b55e6ee2ff2669180c7d50561ad1f9]
~> TaskHandler[id: 51; name: egapx:cmsearch_plane:cmsearch_wnode (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/5c/8bc635ce4257d9901721c56fb40894]
~> TaskHandler[id: 50; name: egapx:cmsearch_plane:cmsearch_wnode (6); status: RUNNING; exit: -; error: -; workDir: Ath_work2/44/46eef63b9e5bbb3a77b554a72d1c16]
~> TaskHandler[id: 52; name: egapx:cmsearch_plane:cmsearch_wnode (8); status: RUNNING; exit: -; error: -; workDir: Ath_work2/73/7137c07f58fbe8ce90e9474a57f20e]
May-11 01:34:16.798 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 314 -- tasks to be submitted are shown below
~> TaskHandler[id: 54; name: egapx:cmsearch_plane:cmsearch_wnode (10); status: NEW; exit: -; error: -; workDir: Ath_work2/0c/faf1626ed139c0e840ac9424997d3b]
~> TaskHandler[id: 47; name: egapx:cmsearch_plane:cmsearch_wnode (3); status: NEW; exit: -; error: -; workDir: Ath_work2/ff/c8a7d90b6bb12489cdf7e42bd75fd1]
~> TaskHandler[id: 45; name: egapx:cmsearch_plane:cmsearch_wnode (1); status: NEW; exit: -; error: -; workDir: Ath_work2/46/f4344d01464c999d4aa7f5dcdaab13]
~> TaskHandler[id: 49; name: egapx:cmsearch_plane:cmsearch_wnode (5); status: NEW; exit: -; error: -; workDir: Ath_work2/71/c6cfa2e3194cf1029d86ff298a3dc9]
~> TaskHandler[id: 58; name: egapx:cmsearch_plane:cmsearch_wnode (14); status: NEW; exit: -; error: -; workDir: Ath_work2/13/ae71634a6567e97bc8ec7fd52f4e30]
~> TaskHandler[id: 59; name: egapx:cmsearch_plane:cmsearch_wnode (15); status: NEW; exit: -; error: -; workDir: Ath_work2/b4/d5c76013ddf17f5b019e2f12629dee]
~> TaskHandler[id: 48; name: egapx:cmsearch_plane:cmsearch_wnode (4); status: NEW; exit: -; error: -; workDir: Ath_work2/5d/17deea808b0a8fbb5494929cedf032]
~> TaskHandler[id: 60; name: egapx:cmsearch_plane:cmsearch_wnode (16); status: NEW; exit: -; error: -; workDir: Ath_work2/96/358445dbe6d70090367a9ad7b7d0fa]
~> TaskHandler[id: 62; name: egapx:trnascan_plane:trnascan_wnode (2); status: NEW; exit: -; error: -; workDir: Ath_work2/7b/2fd85849f9684795d622ed23b4dff4]
~> TaskHandler[id: 65; name: egapx:trnascan_plane:trnascan_wnode (5); status: NEW; exit: -; error: -; workDir: Ath_work2/e7/f6d35b24590220ed1a414d696f3c95]
.. remaining tasks omitted.
May-11 01:34:49.401 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 46; name: egapx:cmsearch_plane:cmsearch_wnode (2); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b7/e475e91bf568b5ba14f5bbe2157480]
May-11 01:34:49.407 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:34:49.407 [Task submitter] INFO  nextflow.Session - [0c/faf162] Submitted process > egapx:cmsearch_plane:cmsearch_wnode (10)
May-11 01:34:52.947 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 55; name: egapx:cmsearch_plane:cmsearch_wnode (11); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/62/660050c2d80d8b08e91f585b18f12c]
May-11 01:34:52.950 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:34:52.950 [Task submitter] INFO  nextflow.Session - [ff/c8a7d9] Submitted process > egapx:cmsearch_plane:cmsearch_wnode (3)
May-11 01:34:56.379 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 57; name: egapx:cmsearch_plane:cmsearch_wnode (13); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a7/b55e6ee2ff2669180c7d50561ad1f9]
May-11 01:34:56.389 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:34:56.389 [Task submitter] INFO  nextflow.Session - [46/f4344d] Submitted process > egapx:cmsearch_plane:cmsearch_wnode (1)
May-11 01:34:59.973 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 50; name: egapx:cmsearch_plane:cmsearch_wnode (6); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/44/46eef63b9e5bbb3a77b554a72d1c16]
May-11 01:34:59.976 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:34:59.976 [Task submitter] INFO  nextflow.Session - [71/c6cfa2] Submitted process > egapx:cmsearch_plane:cmsearch_wnode (5)
May-11 01:35:03.746 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 51; name: egapx:cmsearch_plane:cmsearch_wnode (7); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5c/8bc635ce4257d9901721c56fb40894]
May-11 01:35:03.748 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:35:03.749 [Task submitter] INFO  nextflow.Session - [13/ae7163] Submitted process > egapx:cmsearch_plane:cmsearch_wnode (14)
May-11 01:35:06.988 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 54; name: egapx:cmsearch_plane:cmsearch_wnode (10); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0c/faf1626ed139c0e840ac9424997d3b]
May-11 01:35:06.990 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:35:06.990 [Task submitter] INFO  nextflow.Session - [b4/d5c760] Submitted process > egapx:cmsearch_plane:cmsearch_wnode (15)
May-11 01:35:10.443 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 52; name: egapx:cmsearch_plane:cmsearch_wnode (8); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/73/7137c07f58fbe8ce90e9474a57f20e]
May-11 01:35:10.446 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:35:10.446 [Task submitter] INFO  nextflow.Session - [5d/17deea] Submitted process > egapx:cmsearch_plane:cmsearch_wnode (4)
May-11 01:38:30.931 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 47; name: egapx:cmsearch_plane:cmsearch_wnode (3); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ff/c8a7d90b6bb12489cdf7e42bd75fd1]
~> TaskHandler[id: 45; name: egapx:cmsearch_plane:cmsearch_wnode (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/46/f4344d01464c999d4aa7f5dcdaab13]
~> TaskHandler[id: 49; name: egapx:cmsearch_plane:cmsearch_wnode (5); status: RUNNING; exit: -; error: -; workDir: Ath_work2/71/c6cfa2e3194cf1029d86ff298a3dc9]
~> TaskHandler[id: 58; name: egapx:cmsearch_plane:cmsearch_wnode (14); status: RUNNING; exit: -; error: -; workDir: Ath_work2/13/ae71634a6567e97bc8ec7fd52f4e30]
~> TaskHandler[id: 59; name: egapx:cmsearch_plane:cmsearch_wnode (15); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b4/d5c76013ddf17f5b019e2f12629dee]
~> TaskHandler[id: 48; name: egapx:cmsearch_plane:cmsearch_wnode (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/5d/17deea808b0a8fbb5494929cedf032]
May-11 01:39:17.646 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 307 -- tasks to be submitted are shown below
~> TaskHandler[id: 60; name: egapx:cmsearch_plane:cmsearch_wnode (16); status: NEW; exit: -; error: -; workDir: Ath_work2/96/358445dbe6d70090367a9ad7b7d0fa]
~> TaskHandler[id: 62; name: egapx:trnascan_plane:trnascan_wnode (2); status: NEW; exit: -; error: -; workDir: Ath_work2/7b/2fd85849f9684795d622ed23b4dff4]
~> TaskHandler[id: 65; name: egapx:trnascan_plane:trnascan_wnode (5); status: NEW; exit: -; error: -; workDir: Ath_work2/e7/f6d35b24590220ed1a414d696f3c95]
~> TaskHandler[id: 70; name: egapx:trnascan_plane:trnascan_wnode (10); status: NEW; exit: -; error: -; workDir: Ath_work2/0a/138b4acb02078607371dd509950408]
~> TaskHandler[id: 64; name: egapx:trnascan_plane:trnascan_wnode (4); status: NEW; exit: -; error: -; workDir: Ath_work2/35/49e67fae1c9345ce62604e8f46cb12]
~> TaskHandler[id: 66; name: egapx:trnascan_plane:trnascan_wnode (6); status: NEW; exit: -; error: -; workDir: Ath_work2/cb/570723c54a347d05211d4f1c30599d]
~> TaskHandler[id: 63; name: egapx:trnascan_plane:trnascan_wnode (3); status: NEW; exit: -; error: -; workDir: Ath_work2/2b/71c8261daa0fda5373b78ab2589885]
~> TaskHandler[id: 61; name: egapx:trnascan_plane:trnascan_wnode (1); status: NEW; exit: -; error: -; workDir: Ath_work2/90/f451f42b7bc5c193766709559b3b32]
~> TaskHandler[id: 67; name: egapx:trnascan_plane:trnascan_wnode (7); status: NEW; exit: -; error: -; workDir: Ath_work2/70/6964d5b595feff2bd45e057c1a0b5f]
~> TaskHandler[id: 69; name: egapx:trnascan_plane:trnascan_wnode (9); status: NEW; exit: -; error: -; workDir: Ath_work2/f0/835c8099e4629c4d849e380b97db46]
.. remaining tasks omitted.
May-11 01:39:58.866 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 47; name: egapx:cmsearch_plane:cmsearch_wnode (3); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ff/c8a7d90b6bb12489cdf7e42bd75fd1]
May-11 01:39:58.873 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:39:58.873 [Task submitter] INFO  nextflow.Session - [96/358445] Submitted process > egapx:cmsearch_plane:cmsearch_wnode (16)
May-11 01:43:31.028 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 45; name: egapx:cmsearch_plane:cmsearch_wnode (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/46/f4344d01464c999d4aa7f5dcdaab13]
~> TaskHandler[id: 49; name: egapx:cmsearch_plane:cmsearch_wnode (5); status: RUNNING; exit: -; error: -; workDir: Ath_work2/71/c6cfa2e3194cf1029d86ff298a3dc9]
~> TaskHandler[id: 58; name: egapx:cmsearch_plane:cmsearch_wnode (14); status: RUNNING; exit: -; error: -; workDir: Ath_work2/13/ae71634a6567e97bc8ec7fd52f4e30]
~> TaskHandler[id: 59; name: egapx:cmsearch_plane:cmsearch_wnode (15); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b4/d5c76013ddf17f5b019e2f12629dee]
~> TaskHandler[id: 48; name: egapx:cmsearch_plane:cmsearch_wnode (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/5d/17deea808b0a8fbb5494929cedf032]
~> TaskHandler[id: 60; name: egapx:cmsearch_plane:cmsearch_wnode (16); status: RUNNING; exit: -; error: -; workDir: Ath_work2/96/358445dbe6d70090367a9ad7b7d0fa]
May-11 01:44:18.057 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 306 -- tasks to be submitted are shown below
~> TaskHandler[id: 62; name: egapx:trnascan_plane:trnascan_wnode (2); status: NEW; exit: -; error: -; workDir: Ath_work2/7b/2fd85849f9684795d622ed23b4dff4]
~> TaskHandler[id: 65; name: egapx:trnascan_plane:trnascan_wnode (5); status: NEW; exit: -; error: -; workDir: Ath_work2/e7/f6d35b24590220ed1a414d696f3c95]
~> TaskHandler[id: 70; name: egapx:trnascan_plane:trnascan_wnode (10); status: NEW; exit: -; error: -; workDir: Ath_work2/0a/138b4acb02078607371dd509950408]
~> TaskHandler[id: 64; name: egapx:trnascan_plane:trnascan_wnode (4); status: NEW; exit: -; error: -; workDir: Ath_work2/35/49e67fae1c9345ce62604e8f46cb12]
~> TaskHandler[id: 66; name: egapx:trnascan_plane:trnascan_wnode (6); status: NEW; exit: -; error: -; workDir: Ath_work2/cb/570723c54a347d05211d4f1c30599d]
~> TaskHandler[id: 63; name: egapx:trnascan_plane:trnascan_wnode (3); status: NEW; exit: -; error: -; workDir: Ath_work2/2b/71c8261daa0fda5373b78ab2589885]
~> TaskHandler[id: 61; name: egapx:trnascan_plane:trnascan_wnode (1); status: NEW; exit: -; error: -; workDir: Ath_work2/90/f451f42b7bc5c193766709559b3b32]
~> TaskHandler[id: 67; name: egapx:trnascan_plane:trnascan_wnode (7); status: NEW; exit: -; error: -; workDir: Ath_work2/70/6964d5b595feff2bd45e057c1a0b5f]
~> TaskHandler[id: 69; name: egapx:trnascan_plane:trnascan_wnode (9); status: NEW; exit: -; error: -; workDir: Ath_work2/f0/835c8099e4629c4d849e380b97db46]
~> TaskHandler[id: 71; name: egapx:trnascan_plane:trnascan_wnode (11); status: NEW; exit: -; error: -; workDir: Ath_work2/4e/03233b9c07b28f66722687b0c2b8be]
.. remaining tasks omitted.
May-11 01:45:14.468 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 49; name: egapx:cmsearch_plane:cmsearch_wnode (5); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/71/c6cfa2e3194cf1029d86ff298a3dc9]
May-11 01:45:14.474 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:45:14.474 [Task submitter] INFO  nextflow.Session - [7b/2fd858] Submitted process > egapx:trnascan_plane:trnascan_wnode (2)
May-11 01:45:17.780 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 60; name: egapx:cmsearch_plane:cmsearch_wnode (16); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/96/358445dbe6d70090367a9ad7b7d0fa]
May-11 01:45:17.783 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:45:17.783 [Task submitter] INFO  nextflow.Session - [e7/f6d35b] Submitted process > egapx:trnascan_plane:trnascan_wnode (5)
May-11 01:45:48.493 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 62; name: egapx:trnascan_plane:trnascan_wnode (2); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7b/2fd85849f9684795d622ed23b4dff4]
May-11 01:45:48.497 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:45:48.497 [Task submitter] INFO  nextflow.Session - [0a/138b4a] Submitted process > egapx:trnascan_plane:trnascan_wnode (10)
May-11 01:46:09.710 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 65; name: egapx:trnascan_plane:trnascan_wnode (5); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e7/f6d35b24590220ed1a414d696f3c95]
May-11 01:46:09.715 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:46:09.715 [Task submitter] INFO  nextflow.Session - [35/49e67f] Submitted process > egapx:trnascan_plane:trnascan_wnode (4)
May-11 01:46:12.913 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 70; name: egapx:trnascan_plane:trnascan_wnode (10); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0a/138b4acb02078607371dd509950408]
May-11 01:46:12.916 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:46:12.916 [Task submitter] INFO  nextflow.Session - [cb/570723] Submitted process > egapx:trnascan_plane:trnascan_wnode (6)
May-11 01:46:40.926 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 64; name: egapx:trnascan_plane:trnascan_wnode (4); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/35/49e67fae1c9345ce62604e8f46cb12]
May-11 01:46:40.931 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:46:40.931 [Task submitter] INFO  nextflow.Session - [2b/71c826] Submitted process > egapx:trnascan_plane:trnascan_wnode (3)
May-11 01:46:44.208 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 66; name: egapx:trnascan_plane:trnascan_wnode (6); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/cb/570723c54a347d05211d4f1c30599d]
May-11 01:46:44.210 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:46:44.211 [Task submitter] INFO  nextflow.Session - [90/f451f4] Submitted process > egapx:trnascan_plane:trnascan_wnode (1)
May-11 01:47:09.129 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 63; name: egapx:trnascan_plane:trnascan_wnode (3); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2b/71c8261daa0fda5373b78ab2589885]
May-11 01:47:09.132 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:47:09.132 [Task submitter] INFO  nextflow.Session - [70/6964d5] Submitted process > egapx:trnascan_plane:trnascan_wnode (7)
May-11 01:47:51.193 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 61; name: egapx:trnascan_plane:trnascan_wnode (1); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/90/f451f42b7bc5c193766709559b3b32]
May-11 01:47:51.197 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:47:51.197 [Task submitter] INFO  nextflow.Session - [f0/835c80] Submitted process > egapx:trnascan_plane:trnascan_wnode (9)
May-11 01:47:54.403 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 67; name: egapx:trnascan_plane:trnascan_wnode (7); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/70/6964d5b595feff2bd45e057c1a0b5f]
May-11 01:47:54.407 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:47:54.407 [Task submitter] INFO  nextflow.Session - [4e/03233b] Submitted process > egapx:trnascan_plane:trnascan_wnode (11)
May-11 01:47:58.092 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 69; name: egapx:trnascan_plane:trnascan_wnode (9); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f0/835c8099e4629c4d849e380b97db46]
May-11 01:47:58.096 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:47:58.096 [Task submitter] INFO  nextflow.Session - [58/5e2035] Submitted process > egapx:trnascan_plane:trnascan_wnode (8)
May-11 01:48:01.789 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 71; name: egapx:trnascan_plane:trnascan_wnode (11); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4e/03233b9c07b28f66722687b0c2b8be]
May-11 01:48:01.794 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:48:01.794 [Task submitter] INFO  nextflow.Session - [88/2950f2] Submitted process > egapx:trnascan_plane:trnascan_wnode (14)
May-11 01:48:05.303 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 68; name: egapx:trnascan_plane:trnascan_wnode (8); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/58/5e2035184ed45d51e6a4e7b33dee85]
May-11 01:48:05.308 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:48:05.308 [Task submitter] INFO  nextflow.Session - [7a/22119a] Submitted process > egapx:trnascan_plane:trnascan_wnode (12)
May-11 01:48:09.090 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 74; name: egapx:trnascan_plane:trnascan_wnode (14); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/88/2950f263e81ca1c46dbcbf4d7ebac0]
May-11 01:48:09.094 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:48:09.095 [Task submitter] INFO  nextflow.Session - [d7/ce676c] Submitted process > egapx:trnascan_plane:trnascan_wnode (15)
May-11 01:48:12.402 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 72; name: egapx:trnascan_plane:trnascan_wnode (12); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7a/22119a688c6a770d5b6fd69dbb3f04]
May-11 01:48:12.405 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:48:12.405 [Task submitter] INFO  nextflow.Session - [28/be5f43] Submitted process > egapx:trnascan_plane:trnascan_wnode (16)
May-11 01:48:16.204 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 75; name: egapx:trnascan_plane:trnascan_wnode (15); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d7/ce676ca858de1b17f508300be31cc0]
May-11 01:48:16.207 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:48:16.207 [Task submitter] INFO  nextflow.Session - [b3/4ea929] Submitted process > egapx:trnascan_plane:trnascan_wnode (13)
May-11 01:48:20.059 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 76; name: egapx:trnascan_plane:trnascan_wnode (16); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/28/be5f43b8a1a76472b92477ccb78ec8]
May-11 01:48:20.064 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:48:20.064 [Task submitter] INFO  nextflow.Session - [bb/6bcbe6] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (22)
May-11 01:48:23.347 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 73; name: egapx:trnascan_plane:trnascan_wnode (13); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b3/4ea9291b222640b97fa76743f0b89f]
May-11 01:48:23.352 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:48:23.353 [Task submitter] INFO  nextflow.Session - [20/70e73c] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (51)
May-11 01:48:24.360 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:48:24.360 [Task submitter] INFO  nextflow.Session - [95/7436d2] Submitted process > egapx:trnascan_plane:trnascan_dump
May-11 01:48:28.752 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 371; name: egapx:trnascan_plane:trnascan_dump; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/95/7436d2ce1d148bd180edfb947559fd]
May-11 01:48:31.055 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 45; name: egapx:cmsearch_plane:cmsearch_wnode (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/46/f4344d01464c999d4aa7f5dcdaab13]
~> TaskHandler[id: 58; name: egapx:cmsearch_plane:cmsearch_wnode (14); status: RUNNING; exit: -; error: -; workDir: Ath_work2/13/ae71634a6567e97bc8ec7fd52f4e30]
~> TaskHandler[id: 59; name: egapx:cmsearch_plane:cmsearch_wnode (15); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b4/d5c76013ddf17f5b019e2f12629dee]
~> TaskHandler[id: 48; name: egapx:cmsearch_plane:cmsearch_wnode (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/5d/17deea808b0a8fbb5494929cedf032]
~> TaskHandler[id: 98; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (22); status: RUNNING; exit: -; error: -; workDir: Ath_work2/bb/6bcbe6016efdcf1ad0a094eb403aa6]
~> TaskHandler[id: 127; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (51); status: RUNNING; exit: -; error: -; workDir: Ath_work2/20/70e73c003f393249802e0bc4689889]
May-11 01:48:31.922 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 98; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (22); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bb/6bcbe6016efdcf1ad0a094eb403aa6]
May-11 01:48:31.930 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:48:31.930 [Task submitter] INFO  nextflow.Session - [95/2da42d] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (19)
May-11 01:48:35.491 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 127; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (51); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/20/70e73c003f393249802e0bc4689889]
May-11 01:48:35.496 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:48:35.496 [Task submitter] INFO  nextflow.Session - [b5/ec3487] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (75)
May-11 01:48:44.232 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 95; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (19); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/95/2da42d8aa61f2f6896989a88ae6cb3]
May-11 01:48:44.235 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:48:44.235 [Task submitter] INFO  nextflow.Session - [e9/f00822] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (64)
May-11 01:48:47.368 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 151; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (75); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b5/ec3487e3c993e53206aa3e9271413c]
May-11 01:48:47.371 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:48:47.372 [Task submitter] INFO  nextflow.Session - [fe/c9dbf6] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (33)
May-11 01:48:56.758 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 140; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (64); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e9/f00822e5a07cdf7568e33348dc0a25]
May-11 01:48:56.761 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:48:56.761 [Task submitter] INFO  nextflow.Session - [0e/6f0edc] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (23)
May-11 01:48:59.237 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 109; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (33); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fe/c9dbf6df960681f924af733b0dde58]
May-11 01:48:59.247 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:48:59.247 [Task submitter] INFO  nextflow.Session - [de/69bc00] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (43)
May-11 01:49:08.910 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 99; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (23); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0e/6f0edc179c71af9c9ebbf6e2097aeb]
May-11 01:49:08.913 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:49:08.913 [Task submitter] INFO  nextflow.Session - [e0/0e7332] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (62)
May-11 01:49:11.919 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 119; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (43); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/de/69bc005a207354114cdd805de69f04]
May-11 01:49:11.922 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:49:11.922 [Task submitter] INFO  nextflow.Session - [c0/3dbb82] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (74)
May-11 01:49:18.928 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 280 -- tasks to be submitted are shown below
~> TaskHandler[id: 149; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (73); status: NEW; exit: -; error: -; workDir: Ath_work2/5f/7722faa0730e99fecb6817b25f5150]
~> TaskHandler[id: 102; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (26); status: NEW; exit: -; error: -; workDir: Ath_work2/c6/de8a1613e8ca7a160e97bf5a68c648]
~> TaskHandler[id: 121; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (45); status: NEW; exit: -; error: -; workDir: Ath_work2/d4/24c21a0d51d5bd23249aeb16763872]
~> TaskHandler[id: 146; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (70); status: NEW; exit: -; error: -; workDir: Ath_work2/76/dc21c09302c4d8405311a2f39e61fc]
~> TaskHandler[id: 148; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (72); status: NEW; exit: -; error: -; workDir: Ath_work2/3e/ccb119996b706d5e2177c2e5dbbbac]
~> TaskHandler[id: 118; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (42); status: NEW; exit: -; error: -; workDir: Ath_work2/80/27973c7ac1fc143e40b3bbb8caec73]
~> TaskHandler[id: 154; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (78); status: NEW; exit: -; error: -; workDir: Ath_work2/9a/f8d6db87223972d5fe4e247537be34]
~> TaskHandler[id: 166; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (90); status: NEW; exit: -; error: -; workDir: Ath_work2/09/c8ded5ad586036ed0da99a6de83d06]
~> TaskHandler[id: 117; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (41); status: NEW; exit: -; error: -; workDir: Ath_work2/89/8d8efd3576168ab8f898ab395a3176]
~> TaskHandler[id: 107; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (31); status: NEW; exit: -; error: -; workDir: Ath_work2/20/2655a9e4b8b6e32d382d18e0b903a2]
.. remaining tasks omitted.
May-11 01:49:21.268 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 138; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (62); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e0/0e73320184b79131bac17d74f60135]
May-11 01:49:21.271 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:49:21.271 [Task submitter] INFO  nextflow.Session - [5f/7722fa] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (73)
May-11 01:49:23.609 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 150; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (74); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c0/3dbb8265471b024b66fd280c336389]
May-11 01:49:23.612 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:49:23.612 [Task submitter] INFO  nextflow.Session - [c6/de8a16] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (26)
May-11 01:49:34.003 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 149; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (73); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5f/7722faa0730e99fecb6817b25f5150]
May-11 01:49:34.005 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:49:34.006 [Task submitter] INFO  nextflow.Session - [d4/24c21a] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (45)
May-11 01:49:35.507 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 102; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (26); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c6/de8a1613e8ca7a160e97bf5a68c648]
May-11 01:49:35.511 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:49:35.511 [Task submitter] INFO  nextflow.Session - [76/dc21c0] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (70)
May-11 01:49:46.706 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 121; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (45); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d4/24c21a0d51d5bd23249aeb16763872]
May-11 01:49:46.709 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:49:46.709 [Task submitter] INFO  nextflow.Session - [3e/ccb119] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (72)
May-11 01:49:47.659 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 146; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (70); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/76/dc21c09302c4d8405311a2f39e61fc]
May-11 01:49:47.665 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:49:47.666 [Task submitter] INFO  nextflow.Session - [80/27973c] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (42)
May-11 01:49:58.760 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 148; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (72); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3e/ccb119996b706d5e2177c2e5dbbbac]
May-11 01:49:58.763 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:49:58.763 [Task submitter] INFO  nextflow.Session - [9a/f8d6db] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (78)
May-11 01:50:00.111 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 118; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (42); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/80/27973c7ac1fc143e40b3bbb8caec73]
May-11 01:50:00.114 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:50:00.114 [Task submitter] INFO  nextflow.Session - [09/c8ded5] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (90)
May-11 01:50:11.451 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 154; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (78); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9a/f8d6db87223972d5fe4e247537be34]
May-11 01:50:11.454 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:50:11.454 [Task submitter] INFO  nextflow.Session - [89/8d8efd] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (41)
May-11 01:50:12.867 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 166; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (90); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/09/c8ded5ad586036ed0da99a6de83d06]
May-11 01:50:12.870 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:50:12.870 [Task submitter] INFO  nextflow.Session - [20/2655a9] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (31)
May-11 01:50:23.758 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 117; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (41); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/89/8d8efd3576168ab8f898ab395a3176]
May-11 01:50:23.761 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:50:23.761 [Task submitter] INFO  nextflow.Session - [e9/029934] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (48)
May-11 01:50:24.789 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 107; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (31); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/20/2655a9e4b8b6e32d382d18e0b903a2]
May-11 01:50:24.793 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:50:24.793 [Task submitter] INFO  nextflow.Session - [8b/39c640] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (54)
May-11 01:50:35.766 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 124; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (48); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e9/02993434cd73a9cce1f9b1f4ef5454]
May-11 01:50:35.769 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:50:35.769 [Task submitter] INFO  nextflow.Session - [96/f9d8b5] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (21)
May-11 01:50:36.860 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 130; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (54); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8b/39c6407fe8751504b6d523b328adc9]
May-11 01:50:36.864 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:50:36.864 [Task submitter] INFO  nextflow.Session - [d9/fd84e2] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (85)
May-11 01:50:47.817 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 97; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (21); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/96/f9d8b5ccc39ed565d8ee808c478bdf]
May-11 01:50:47.819 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:50:47.820 [Task submitter] INFO  nextflow.Session - [c7/7cdeae] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (81)
May-11 01:50:48.811 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 161; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (85); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d9/fd84e2bdf89a8203302d6945411568]
May-11 01:50:48.816 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:50:48.816 [Task submitter] INFO  nextflow.Session - [05/2dd029] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (25)
May-11 01:51:00.825 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 157; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (81); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c7/7cdeaea2b66e52f58dbce3910841d1]
May-11 01:51:00.828 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:51:00.828 [Task submitter] INFO  nextflow.Session - [0f/f17449] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (141)
May-11 01:51:01.997 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 101; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (25); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/05/2dd0295813620cd51525b5f55eebec]
May-11 01:51:02.001 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:51:02.001 [Task submitter] INFO  nextflow.Session - [3a/84f17b] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (79)
May-11 01:51:12.303 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 45; name: egapx:cmsearch_plane:cmsearch_wnode (1); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/46/f4344d01464c999d4aa7f5dcdaab13]
May-11 01:51:12.306 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:51:12.306 [Task submitter] INFO  nextflow.Session - [b3/6d21e4] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (36)
May-11 01:51:14.043 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 155; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (79); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3a/84f17b8c1aa237e9c6ccb4416fc6b3]
May-11 01:51:14.045 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:51:14.046 [Task submitter] INFO  nextflow.Session - [05/02e808] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (13)
May-11 01:51:15.929 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 59; name: egapx:cmsearch_plane:cmsearch_wnode (15); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b4/d5c76013ddf17f5b019e2f12629dee]
May-11 01:51:15.932 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:51:15.932 [Task submitter] INFO  nextflow.Session - [b0/8d8bc7] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (27)
May-11 01:51:16.383 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 219; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (141); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0f/f17449c0af4418975dbd20a5383cb9]
May-11 01:51:16.386 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:51:16.386 [Task submitter] INFO  nextflow.Session - [03/b17a0e] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (29)
May-11 01:51:24.596 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 112; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (36); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b3/6d21e401a2482a961d7a55319eca61]
May-11 01:51:24.599 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:51:24.600 [Task submitter] INFO  nextflow.Session - [b2/61807d] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (10)
May-11 01:51:26.884 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 89; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (13); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/05/02e808071ba8f062560030ec18d58b]
May-11 01:51:26.887 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:51:26.887 [Task submitter] INFO  nextflow.Session - [c4/214237] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (4)
May-11 01:51:29.020 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 103; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (27); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b0/8d8bc7905769f25e8bac4ab9300040]
May-11 01:51:29.026 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:51:29.026 [Task submitter] INFO  nextflow.Session - [55/72f31c] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (1)
May-11 01:51:29.123 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 105; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (29); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/03/b17a0ed16f83ea17bfcba9d1f0e9ab]
May-11 01:51:29.127 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:51:29.128 [Task submitter] INFO  nextflow.Session - [ca/190e84] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (34)
May-11 01:51:36.767 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 86; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (10); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b2/61807d047d830c56a997695f4d795e]
May-11 01:51:36.770 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:51:36.770 [Task submitter] INFO  nextflow.Session - [fa/9b8385] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (96)
May-11 01:51:39.431 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 80; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (4); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c4/21423717609cbae6eb4d1be406ebbc]
May-11 01:51:39.434 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:51:39.434 [Task submitter] INFO  nextflow.Session - [b4/b2dc22] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (69)
May-11 01:51:41.637 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 77; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (1); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/55/72f31cd853e8b5b2f8e1e151bb529a]
May-11 01:51:41.640 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:51:41.640 [Task submitter] INFO  nextflow.Session - [ac/68a36a] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (20)
May-11 01:51:41.642 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 110; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (34); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ca/190e841c063f7a65747b3be795bfae]
May-11 01:51:41.645 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:51:41.645 [Task submitter] INFO  nextflow.Session - [1e/1f390a] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (56)
May-11 01:51:49.231 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 172; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (96); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fa/9b8385bd2da37b2a32d9042f0c2663]
May-11 01:51:49.234 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:51:49.234 [Task submitter] INFO  nextflow.Session - [b8/582280] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (66)
May-11 01:51:54.235 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 132; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (56); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1e/1f390a817cc9bce05c6f6e30eec2ec]
May-11 01:51:54.240 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:51:54.240 [Task submitter] INFO  nextflow.Session - [f9/bf7c19] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (38)
May-11 01:51:54.421 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 96; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (20); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ac/68a36a9188578cd3c6686ac2167d3c]
May-11 01:51:54.425 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:51:54.425 [Task submitter] INFO  nextflow.Session - [39/ddc3f9] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (61)
May-11 01:51:54.590 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 145; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (69); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b4/b2dc22104c44094df262727655d259]
May-11 01:51:54.594 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:51:54.594 [Task submitter] INFO  nextflow.Session - [6b/76f110] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (87)
May-11 01:52:04.064 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 142; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (66); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b8/582280f047e9c107a7e437c998085d]
May-11 01:52:04.067 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:04.067 [Task submitter] INFO  nextflow.Session - [58/1ab932] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (24)
May-11 01:52:07.448 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 137; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (61); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/39/ddc3f98495865e075c3a41c3b7065d]
May-11 01:52:07.452 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:07.452 [Task submitter] INFO  nextflow.Session - [d7/e3d702] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (80)
May-11 01:52:07.472 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 114; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (38); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f9/bf7c19e1dea926e07d8ed2b8750c66]
May-11 01:52:07.478 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:07.479 [Task submitter] INFO  nextflow.Session - [bd/aa72f5] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (63)
May-11 01:52:07.487 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 163; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (87); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6b/76f110b984280196967ff245128ca3]
May-11 01:52:07.491 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:07.491 [Task submitter] INFO  nextflow.Session - [a4/6a3d05] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (58)
May-11 01:52:17.044 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 100; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (24); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/58/1ab93248e4f14c2c5d42e851c0d7f4]
May-11 01:52:17.048 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:17.048 [Task submitter] INFO  nextflow.Session - [72/033118] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (7)
May-11 01:52:20.142 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 134; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (58); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a4/6a3d0590fadd8a77b1180c15dd0ec7]
May-11 01:52:20.146 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:20.146 [Task submitter] INFO  nextflow.Session - [05/648587] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (68)
May-11 01:52:20.360 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 139; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (63); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bd/aa72f56b9168d520a6a78f0218f239]
May-11 01:52:20.364 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:20.364 [Task submitter] INFO  nextflow.Session - [7a/6016e7] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (82)
May-11 01:52:20.460 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 156; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (80); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d7/e3d702173a19e0c89aa3fa9a8ea487]
May-11 01:52:20.463 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:20.463 [Task submitter] INFO  nextflow.Session - [c6/37816d] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (49)
May-11 01:52:29.341 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 83; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (7); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/72/033118b91b2324d2146f00505a014f]
May-11 01:52:29.346 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:29.347 [Task submitter] INFO  nextflow.Session - [d5/d7114b] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (84)
May-11 01:52:33.110 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 144; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (68); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/05/6485874867354656c78baf725da13e]
May-11 01:52:33.114 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:33.114 [Task submitter] INFO  nextflow.Session - [c0/e9a05b] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (99)
May-11 01:52:33.437 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 158; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (82); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7a/6016e73bfb58494951d84f2a83fe28]
May-11 01:52:33.440 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:33.440 [Task submitter] INFO  nextflow.Session - [e1/e43361] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (52)
May-11 01:52:33.611 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 125; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (49); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c6/37816da9cbbc04854fcebe953011bd]
May-11 01:52:33.613 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:33.613 [Task submitter] INFO  nextflow.Session - [06/434c0d] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (92)
May-11 01:52:41.673 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 160; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (84); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d5/d7114ba64c39e5c938227abebf5844]
May-11 01:52:41.676 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:41.676 [Task submitter] INFO  nextflow.Session - [82/f35343] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (44)
May-11 01:52:46.708 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 128; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (52); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e1/e433612b59ab7861a5dbbe1b0b0418]
May-11 01:52:46.711 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:46.711 [Task submitter] INFO  nextflow.Session - [ed/e5db78] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (77)
May-11 01:52:46.745 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 168; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (92); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/06/434c0df14a1d2670923053ff459c0b]
May-11 01:52:46.748 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:46.748 [Task submitter] INFO  nextflow.Session - [1a/8a30ee] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (98)
May-11 01:52:46.761 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 175; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (99); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c0/e9a05ba6630fe8a50873450a35cbb5]
May-11 01:52:46.763 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:46.763 [Task submitter] INFO  nextflow.Session - [1c/9efd8d] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (47)
May-11 01:52:53.776 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 120; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (44); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/82/f353431bb291b8dd8761cdd2cd0eff]
May-11 01:52:53.781 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:53.781 [Task submitter] INFO  nextflow.Session - [62/0d10d1] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (15)
May-11 01:52:59.556 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 153; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (77); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ed/e5db783bbe123390941c8443ec30a1]
May-11 01:52:59.559 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:59.559 [Task submitter] INFO  nextflow.Session - [32/b138fa] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (9)
May-11 01:52:59.568 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 123; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (47); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1c/9efd8d0cde40ed6e88e08575866759]
May-11 01:52:59.570 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:59.571 [Task submitter] INFO  nextflow.Session - [89/bcc800] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (5)
May-11 01:52:59.579 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 174; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (98); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1a/8a30eebfdeb2581d78d79315b30ec9]
May-11 01:52:59.581 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:52:59.581 [Task submitter] INFO  nextflow.Session - [2e/263b6d] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (83)
May-11 01:53:05.713 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 91; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (15); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/62/0d10d196683fa04520951710b7384f]
May-11 01:53:05.716 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:53:05.716 [Task submitter] INFO  nextflow.Session - [da/eea4a6] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (35)
May-11 01:53:12.610 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 85; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (9); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/32/b138fa666f9fecdc7d401f4bcba465]
May-11 01:53:12.613 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:53:12.613 [Task submitter] INFO  nextflow.Session - [d0/c795c6] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (3)
May-11 01:53:12.615 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 81; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (5); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/89/bcc800887b8dfc7c214f0520ecbad2]
May-11 01:53:12.617 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:53:12.617 [Task submitter] INFO  nextflow.Session - [aa/d46c9e] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (67)
May-11 01:53:12.716 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 159; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (83); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2e/263b6d2cbbdc083968e2b05113053f]
May-11 01:53:12.718 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:53:12.718 [Task submitter] INFO  nextflow.Session - [6d/d0f9ac] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (37)
May-11 01:53:17.757 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 111; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (35); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/da/eea4a642357eeec506b0a201b727dc]
May-11 01:53:17.759 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:53:17.759 [Task submitter] INFO  nextflow.Session - [3c/2e0042] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (39)
May-11 01:53:25.350 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 79; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (3); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d0/c795c6c7c2f634f4b6658203bddbd1]
May-11 01:53:25.352 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:53:25.352 [Task submitter] INFO  nextflow.Session - [59/b80fbb] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (91)
May-11 01:53:25.371 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 143; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (67); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/aa/d46c9ea50832e9c019601d193471cb]
May-11 01:53:25.373 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:53:25.373 [Task submitter] INFO  nextflow.Session - [a2/c80de5] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (57)
May-11 01:53:25.876 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 113; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (37); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6d/d0f9acf7af1c1ee5d4c1ceb83d2387]
May-11 01:53:25.879 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:53:25.879 [Task submitter] INFO  nextflow.Session - [08/8dd4fb] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (32)
May-11 01:53:29.725 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 115; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (39); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3c/2e004224aaf66fc9e54389b5679652]
May-11 01:53:29.728 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:53:29.728 [Task submitter] INFO  nextflow.Session - [76/be48e5] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (28)
May-11 01:53:31.127 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 58; name: egapx:cmsearch_plane:cmsearch_wnode (14); status: RUNNING; exit: -; error: -; workDir: Ath_work2/13/ae71634a6567e97bc8ec7fd52f4e30]
~> TaskHandler[id: 48; name: egapx:cmsearch_plane:cmsearch_wnode (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/5d/17deea808b0a8fbb5494929cedf032]
~> TaskHandler[id: 167; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (91); status: RUNNING; exit: -; error: -; workDir: Ath_work2/59/b80fbb4d2d7b3e7f9478b0ea2a423c]
~> TaskHandler[id: 133; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (57); status: RUNNING; exit: -; error: -; workDir: Ath_work2/a2/c80de5c0512b72f3aacdd2a6500308]
~> TaskHandler[id: 108; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (32); status: RUNNING; exit: -; error: -; workDir: Ath_work2/08/8dd4fb329c9e602c7da80237be7baf]
~> TaskHandler[id: 104; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (28); status: RUNNING; exit: -; error: -; workDir: Ath_work2/76/be48e52082d12d205ff3c4c441ddf2]
May-11 01:53:38.007 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 133; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (57); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a2/c80de5c0512b72f3aacdd2a6500308]
May-11 01:53:38.010 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:53:38.010 [Task submitter] INFO  nextflow.Session - [15/d0738c] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (18)
May-11 01:53:38.015 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 167; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (91); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/59/b80fbb4d2d7b3e7f9478b0ea2a423c]
May-11 01:53:38.017 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:53:38.017 [Task submitter] INFO  nextflow.Session - [fb/343512] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (76)
May-11 01:53:38.999 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 108; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (32); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/08/8dd4fb329c9e602c7da80237be7baf]
May-11 01:53:39.002 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:53:39.002 [Task submitter] INFO  nextflow.Session - [6c/3c2776] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (65)
May-11 01:53:41.736 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 104; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (28); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/76/be48e52082d12d205ff3c4c441ddf2]
May-11 01:53:41.738 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:53:41.738 [Task submitter] INFO  nextflow.Session - [3a/6acd86] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (55)
May-11 01:53:51.196 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 152; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (76); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fb/34351233574571d33b5ace0b994d43]
May-11 01:53:51.198 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:53:51.199 [Task submitter] INFO  nextflow.Session - [c0/651613] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (17)
May-11 01:53:51.237 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 94; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (18); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/15/d0738cc2994beadf79428868439a8f]
May-11 01:53:51.240 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:53:51.240 [Task submitter] INFO  nextflow.Session - [50/9bd82b] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (2)
May-11 01:53:52.055 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 141; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (65); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6c/3c2776f3a2b196c23440a33cb79a2e]
May-11 01:53:52.058 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:53:52.058 [Task submitter] INFO  nextflow.Session - [3e/00dc8d] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (11)
May-11 01:53:54.223 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 131; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (55); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3a/6acd863b8aa10473990a2b7ca66113]
May-11 01:53:54.226 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:53:54.226 [Task submitter] INFO  nextflow.Session - [46/49ec06] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (53)
May-11 01:54:04.018 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 78; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (2); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/50/9bd82b2c29769c8ef70ea4e1b94fc3]
May-11 01:54:04.023 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:04.024 [Task submitter] INFO  nextflow.Session - [67/72bcb9] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (8)
May-11 01:54:04.717 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 93; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (17); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c0/651613780dad767cd4ed8330ae2135]
May-11 01:54:04.719 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:04.720 [Task submitter] INFO  nextflow.Session - [09/103d4c] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (86)
May-11 01:54:05.635 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 87; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (11); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3e/00dc8d6acedaa462fc7d1182fc69b3]
May-11 01:54:05.638 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:05.639 [Task submitter] INFO  nextflow.Session - [b5/ded7c5] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (100)
May-11 01:54:07.174 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 129; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (53); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/46/49ec064538a93bdf06765e786aa11f]
May-11 01:54:07.177 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:07.177 [Task submitter] INFO  nextflow.Session - [31/b169f3] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (12)
May-11 01:54:17.099 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 84; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (8); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/67/72bcb9ad3e7fe79a6bbedf1b4bdd05]
May-11 01:54:17.101 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:17.102 [Task submitter] INFO  nextflow.Session - [f3/67ddc3] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (93)
May-11 01:54:17.783 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 162; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (86); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/09/103d4ce08db15f9851f915d85b5db8]
May-11 01:54:17.787 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:17.788 [Task submitter] INFO  nextflow.Session - [88/ac5af8] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (30)
May-11 01:54:18.514 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 176; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (100); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b5/ded7c50b18105672e9ec33a1c8fc78]
May-11 01:54:18.518 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:18.518 [Task submitter] INFO  nextflow.Session - [2b/a5a37c] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (16)
May-11 01:54:19.521 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 202 -- tasks to be submitted are shown below
~> TaskHandler[id: 126; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (50); status: NEW; exit: -; error: -; workDir: Ath_work2/bb/4a44a98160315d57de8f8ea8c8b98b]
~> TaskHandler[id: 170; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (94); status: NEW; exit: -; error: -; workDir: Ath_work2/91/9e895cad513d0f162dd1be9111eb68]
~> TaskHandler[id: 82; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (6); status: NEW; exit: -; error: -; workDir: Ath_work2/2e/87f90435e04bc0ff5d1bb6c68cb66a]
~> TaskHandler[id: 173; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (97); status: NEW; exit: -; error: -; workDir: Ath_work2/16/e00264f7f3047c177e9d18f019e3b5]
~> TaskHandler[id: 165; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (89); status: NEW; exit: -; error: -; workDir: Ath_work2/40/6edebdaefc9632623e6931da9238d4]
~> TaskHandler[id: 116; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (40); status: NEW; exit: -; error: -; workDir: Ath_work2/ac/a09c86edaead83e8a3b5a5420f365d]
~> TaskHandler[id: 136; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (60); status: NEW; exit: -; error: -; workDir: Ath_work2/83/8c3c4972e3219f6e84fed90f9237c7]
~> TaskHandler[id: 90; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (14); status: NEW; exit: -; error: -; workDir: Ath_work2/48/508b65b7de901532b5b45fe6c97ea8]
~> TaskHandler[id: 122; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (46); status: NEW; exit: -; error: -; workDir: Ath_work2/a1/5a4328c633d2abc3cf2a2e4d789685]
~> TaskHandler[id: 171; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (95); status: NEW; exit: -; error: -; workDir: Ath_work2/18/2dd733c3ff6a549f8e0a7cd6855ae7]
.. remaining tasks omitted.
May-11 01:54:19.973 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 88; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (12); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/31/b169f321f1860350ae189bfb9d60c8]
May-11 01:54:19.976 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:19.976 [Task submitter] INFO  nextflow.Session - [bb/4a44a9] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (50)
May-11 01:54:29.774 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 169; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (93); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f3/67ddc3c017fb26118f26a81f6d37b3]
May-11 01:54:29.776 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:29.777 [Task submitter] INFO  nextflow.Session - [91/9e895c] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (94)
May-11 01:54:31.250 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 106; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (30); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/88/ac5af8172622cd80298578dd9ba314]
May-11 01:54:31.252 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:31.253 [Task submitter] INFO  nextflow.Session - [2e/87f904] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (6)
May-11 01:54:31.608 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 92; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (16); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2b/a5a37cd7c35b3ffebae09d54b4b96b]
May-11 01:54:31.610 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:31.610 [Task submitter] INFO  nextflow.Session - [16/e00264] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (97)
May-11 01:54:33.012 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 126; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (50); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bb/4a44a98160315d57de8f8ea8c8b98b]
May-11 01:54:33.014 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:33.014 [Task submitter] INFO  nextflow.Session - [40/6edebd] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (89)
May-11 01:54:42.544 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 170; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (94); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/91/9e895cad513d0f162dd1be9111eb68]
May-11 01:54:42.547 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:42.547 [Task submitter] INFO  nextflow.Session - [ac/a09c86] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (40)
May-11 01:54:44.252 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 82; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (6); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2e/87f90435e04bc0ff5d1bb6c68cb66a]
May-11 01:54:44.256 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:44.256 [Task submitter] INFO  nextflow.Session - [83/8c3c49] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (60)
May-11 01:54:44.833 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 173; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (97); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/16/e00264f7f3047c177e9d18f019e3b5]
May-11 01:54:44.836 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:44.836 [Task submitter] INFO  nextflow.Session - [48/508b65] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (14)
May-11 01:54:46.151 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 165; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (89); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/40/6edebdaefc9632623e6931da9238d4]
May-11 01:54:46.154 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:46.154 [Task submitter] INFO  nextflow.Session - [a1/5a4328] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (46)
May-11 01:54:55.030 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 116; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (40); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ac/a09c86edaead83e8a3b5a5420f365d]
May-11 01:54:55.033 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:55.033 [Task submitter] INFO  nextflow.Session - [18/2dd733] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (95)
May-11 01:54:57.290 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 136; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (60); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/83/8c3c4972e3219f6e84fed90f9237c7]
May-11 01:54:57.293 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:57.293 [Task submitter] INFO  nextflow.Session - [8f/4a7cd5] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (88)
May-11 01:54:57.424 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 90; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (14); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/48/508b65b7de901532b5b45fe6c97ea8]
May-11 01:54:57.426 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:57.426 [Task submitter] INFO  nextflow.Session - [d3/680825] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (59)
May-11 01:54:58.836 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 122; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (46); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a1/5a4328c633d2abc3cf2a2e4d789685]
May-11 01:54:58.839 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:54:58.840 [Task submitter] INFO  nextflow.Session - [26/d8a656] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (71)
May-11 01:55:07.104 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 171; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (95); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/18/2dd733c3ff6a549f8e0a7cd6855ae7]
May-11 01:55:07.107 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:55:07.107 [Task submitter] INFO  nextflow.Session - [6b/cd368e] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (115)
May-11 01:55:10.093 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 164; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (88); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8f/4a7cd51dfd039cf49bdf6f9e52fbc3]
May-11 01:55:10.095 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:55:10.095 [Task submitter] INFO  nextflow.Session - [f2/15f228] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (104)
May-11 01:55:10.564 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 135; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (59); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d3/680825a5ef953bb5317f89cb06e2f6]
May-11 01:55:10.566 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:55:10.566 [Task submitter] INFO  nextflow.Session - [6a/8591f8] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (124)
May-11 01:55:11.568 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 147; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (71); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/26/d8a6561ff466c8ea7154b24652e628]
May-11 01:55:11.570 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:55:11.570 [Task submitter] INFO  nextflow.Session - [09/786617] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (110)
May-11 01:55:18.950 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 193; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (115); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6b/cd368e68760a4810f08d68c1b7a788]
May-11 01:55:18.952 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:55:18.952 [Task submitter] INFO  nextflow.Session - [8f/0ee2ad] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (103)
May-11 01:55:22.723 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 182; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (104); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f2/15f22806dfefcbb78c1dd31f8f5387]
May-11 01:55:22.725 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:55:22.726 [Task submitter] INFO  nextflow.Session - [4a/0132d2] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (121)
May-11 01:55:23.334 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 202; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (124); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6a/8591f8654c349d436d1524dc855919]
May-11 01:55:23.336 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:55:23.336 [Task submitter] INFO  nextflow.Session - [9d/f7a173] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (106)
May-11 01:55:24.441 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 188; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (110); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/09/7866175c72e06be1f1834033bd13b5]
May-11 01:55:24.445 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:55:24.445 [Task submitter] INFO  nextflow.Session - [e5/fbfb47] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (113)
May-11 01:55:30.890 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 181; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (103); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8f/0ee2ad190297627359757306cae50b]
May-11 01:55:30.892 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:55:30.892 [Task submitter] INFO  nextflow.Session - [26/b8ad47] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (112)
May-11 01:55:35.965 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 199; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (121); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4a/0132d22cfaa84340964b34c416b524]
May-11 01:55:35.967 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:55:35.967 [Task submitter] INFO  nextflow.Session - [fb/720049] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (102)
May-11 01:55:36.667 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 184; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (106); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9d/f7a173747ae03a5d5585dc5dd12864]
May-11 01:55:36.669 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:55:36.669 [Task submitter] INFO  nextflow.Session - [d7/dcc5c1] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (101)
May-11 01:55:37.087 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 191; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (113); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e5/fbfb47fb14cf739efcb2a6e5e9b2fa]
May-11 01:55:37.090 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:55:37.090 [Task submitter] INFO  nextflow.Session - [94/ce25f7] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (108)
May-11 01:55:42.726 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 190; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (112); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/26/b8ad47f0ea109e44d6545d3ce03a2d]
May-11 01:55:42.728 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:55:42.728 [Task submitter] INFO  nextflow.Session - [de/cecab1] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (125)
May-11 01:55:48.655 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 180; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (102); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fb/7200497cb7e80a332d08a4f385fedd]
May-11 01:55:48.657 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:55:48.657 [Task submitter] INFO  nextflow.Session - [e1/1f22b1] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (119)
May-11 01:55:49.179 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 177; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (101); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d7/dcc5c1afcbb907be4f4f6ec0416c72]
May-11 01:55:49.181 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:55:49.182 [Task submitter] INFO  nextflow.Session - [a4/89aad3] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (109)
May-11 01:55:49.609 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 186; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (108); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/94/ce25f71f9c66ad79cf3e411ff77469]
May-11 01:55:49.611 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:55:49.611 [Task submitter] INFO  nextflow.Session - [1f/243b80] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (107)
May-11 01:55:54.547 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 203; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (125); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/de/cecab1ddae33f3faf8f4098a30c6d5]
May-11 01:55:54.550 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:55:54.550 [Task submitter] INFO  nextflow.Session - [29/f2a872] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (127)
May-11 01:56:02.016 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 197; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (119); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e1/1f22b12a2cc9831882a5a3c64df57f]
May-11 01:56:02.019 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:02.019 [Task submitter] INFO  nextflow.Session - [4e/4b3824] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (120)
May-11 01:56:02.019 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 187; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (109); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a4/89aad3616a35e6df7cd05e8d99cf51]
May-11 01:56:02.021 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:02.021 [Task submitter] INFO  nextflow.Session - [62/82339d] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (139)
May-11 01:56:02.505 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 185; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (107); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1f/243b806f7ce4761429619f124a3908]
May-11 01:56:02.507 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:02.507 [Task submitter] INFO  nextflow.Session - [10/988715] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (144)
May-11 01:56:06.334 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 205; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (127); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/29/f2a872497a1e57327cfdb0ea8f6665]
May-11 01:56:06.336 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:06.336 [Task submitter] INFO  nextflow.Session - [4f/6253c6] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (114)
May-11 01:56:14.344 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 198; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (120); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4e/4b3824210ec02a9860da143e685c92]
May-11 01:56:14.346 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:14.346 [Task submitter] INFO  nextflow.Session - [eb/5a844a] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (130)
May-11 01:56:17.366 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 217; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (139); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/62/82339d1cd1a6807337684e1af72809]
May-11 01:56:17.368 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:17.368 [Task submitter] INFO  nextflow.Session - [dc/70d219] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (148)
May-11 01:56:18.166 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 192; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (114); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4f/6253c67f1c70b8fbe48a70eee592a4]
May-11 01:56:18.169 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:18.169 [Task submitter] INFO  nextflow.Session - [78/ea4a27] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (136)
May-11 01:56:18.216 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 222; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (144); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/10/9887158f490bcbeab2ecffaf2907a1]
May-11 01:56:18.219 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:18.219 [Task submitter] INFO  nextflow.Session - [d2/4ad788] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (128)
May-11 01:56:29.275 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 208; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (130); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/eb/5a844a99bf9d513c1e665f0073c644]
May-11 01:56:29.277 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:29.277 [Task submitter] INFO  nextflow.Session - [a5/18b1d8] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (118)
May-11 01:56:29.874 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 226; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (148); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/dc/70d219b82553ed966a1d7cee6cbc42]
May-11 01:56:29.876 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:29.876 [Task submitter] INFO  nextflow.Session - [bf/b466b3] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (105)
May-11 01:56:30.580 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 206; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (128); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d2/4ad788adcc0128395a0f8bab975d59]
May-11 01:56:30.582 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:30.582 [Task submitter] INFO  nextflow.Session - [47/cd8bb1] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (111)
May-11 01:56:33.774 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 214; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (136); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/78/ea4a27ff09c0d7f21608fb6ada37a6]
May-11 01:56:33.777 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:33.777 [Task submitter] INFO  nextflow.Session - [69/53b67a] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (134)
May-11 01:56:41.639 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 196; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (118); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a5/18b1d868516a2439446a10172f5aab]
May-11 01:56:41.641 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:41.641 [Task submitter] INFO  nextflow.Session - [0b/3ddfa5] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (168)
May-11 01:56:43.552 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 183; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (105); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bf/b466b3a3a94c46bc90cf25526108cb]
May-11 01:56:43.554 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:43.554 [Task submitter] INFO  nextflow.Session - [1a/fc0749] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (175)
May-11 01:56:45.115 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 189; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (111); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/47/cd8bb154e55834bfc8bb75102bb05c]
May-11 01:56:45.118 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:45.118 [Task submitter] INFO  nextflow.Session - [bf/90edaf] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (133)
May-11 01:56:49.207 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 48; name: egapx:cmsearch_plane:cmsearch_wnode (4); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5d/17deea808b0a8fbb5494929cedf032]
May-11 01:56:49.209 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:49.209 [Task submitter] INFO  nextflow.Session - [1d/c71d0f] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (169)
May-11 01:56:49.983 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 212; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (134); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/69/53b67a40f8bf74922bd3b22806ea1e]
May-11 01:56:49.985 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:49.985 [Task submitter] INFO  nextflow.Session - [eb/75fc3a] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (123)
May-11 01:56:53.157 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 58; name: egapx:cmsearch_plane:cmsearch_wnode (14); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/13/ae71634a6567e97bc8ec7fd52f4e30]
May-11 01:56:53.163 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:53.164 [Task submitter] INFO  nextflow.Session - [37/51fc33] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (147)
May-11 01:56:54.169 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:56:54.169 [Task submitter] INFO  nextflow.Session - [69/577c11] Submitted process > egapx:cmsearch_plane:gpx_qdump_and_annot_merge
May-11 01:57:00.252 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 372; name: egapx:cmsearch_plane:gpx_qdump_and_annot_merge; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/69/577c119c4c1d86feb2cff3c7a51c0d]
May-11 01:57:03.175 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 201; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (123); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/eb/75fc3af5b4313a3202efa8e7e9cabc]
May-11 01:57:03.177 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:03.177 [Task submitter] INFO  nextflow.Session - [42/8deede] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (116)
May-11 01:57:03.538 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 211; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (133); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bf/90edaf3b905ae57db17411506ffc58]
May-11 01:57:03.540 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:03.540 [Task submitter] INFO  nextflow.Session - [56/494b06] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (131)
May-11 01:57:06.360 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 225; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (147); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/37/51fc33f8b8a19f99499138b896a154]
May-11 01:57:06.362 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:06.362 [Task submitter] INFO  nextflow.Session - [ce/35301c] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (153)
May-11 01:57:06.399 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 246; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (168); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0b/3ddfa5166ee36622f679db51b652d2]
May-11 01:57:06.402 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:06.402 [Task submitter] INFO  nextflow.Session - [eb/477460] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (163)
May-11 01:57:08.392 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 253; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (175); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1a/fc074937f29262e27ffdb49867091c]
May-11 01:57:08.399 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:08.399 [Task submitter] INFO  nextflow.Session - [35/57ee21] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (167)
May-11 01:57:11.124 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 247; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (169); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1d/c71d0ff265eaad0284174aab0e061f]
May-11 01:57:11.126 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:11.126 [Task submitter] INFO  nextflow.Session - [b0/51694c] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (157)
May-11 01:57:16.098 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 194; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (116); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/42/8deede40223b41eff57c4478fd8776]
May-11 01:57:16.101 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:16.101 [Task submitter] INFO  nextflow.Session - [80/8d2ab2] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (142)
May-11 01:57:19.454 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 231; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (153); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ce/35301ca497b65e3e9785339c6023d9]
May-11 01:57:19.459 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:19.459 [Task submitter] INFO  nextflow.Session - [6f/5715c7] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (172)
May-11 01:57:22.435 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 209; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (131); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/56/494b06d4705b828b518c6275012afe]
May-11 01:57:22.439 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:22.439 [Task submitter] INFO  nextflow.Session - [e8/068938] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (166)
May-11 01:57:23.540 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 235; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (157); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b0/51694c473426ed87ee921286edda22]
May-11 01:57:23.542 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:23.542 [Task submitter] INFO  nextflow.Session - [1e/1c5f82] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (143)
May-11 01:57:31.039 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 241; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (163); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/eb/47746028f5a8bbd3ef2652e2d87d32]
May-11 01:57:31.042 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:31.042 [Task submitter] INFO  nextflow.Session - [6b/68046b] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (122)
May-11 01:57:31.725 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 220; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (142); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/80/8d2ab25055ab1c7464c64ae045b279]
May-11 01:57:31.728 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:31.729 [Task submitter] INFO  nextflow.Session - [2c/9e4688] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (151)
May-11 01:57:33.072 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 245; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (167); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/35/57ee2135efe71f27591f7821759afb]
May-11 01:57:33.078 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:33.078 [Task submitter] INFO  nextflow.Session - [9f/6d4de0] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (156)
May-11 01:57:40.994 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 250; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (172); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6f/5715c72e270d6d7db21e5bcddfcbfd]
May-11 01:57:40.997 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:40.997 [Task submitter] INFO  nextflow.Session - [63/549432] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (165)
May-11 01:57:41.860 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 221; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (143); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1e/1c5f82a0f8457dd2645a2759c4d0a3]
May-11 01:57:41.871 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:41.871 [Task submitter] INFO  nextflow.Session - [a9/6091db] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (146)
May-11 01:57:44.481 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 200; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (122); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6b/68046b438592edcecb953e8b93651f]
May-11 01:57:44.484 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:44.484 [Task submitter] INFO  nextflow.Session - [47/7a12ac] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (159)
May-11 01:57:45.236 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 229; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (151); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2c/9e4688f438e96cffb381ff75666813]
May-11 01:57:45.244 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:45.244 [Task submitter] INFO  nextflow.Session - [28/c77d99] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (150)
May-11 01:57:45.956 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 234; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (156); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9f/6d4de06db6f387e8e4bd474feac77a]
May-11 01:57:45.958 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:45.958 [Task submitter] INFO  nextflow.Session - [25/660cea] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (177)
May-11 01:57:46.913 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 244; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (166); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e8/0689385310e34b22b151c02612d8d8]
May-11 01:57:46.915 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:46.915 [Task submitter] INFO  nextflow.Session - [15/232be3] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (138)
May-11 01:57:54.618 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 224; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (146); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a9/6091db287d599b87c74d9862c87d02]
May-11 01:57:54.620 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:54.620 [Task submitter] INFO  nextflow.Session - [5e/399b02] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (164)
May-11 01:57:57.830 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 237; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (159); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/47/7a12ac4d9e01f4219deac79ff4f308]
May-11 01:57:57.832 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:57.833 [Task submitter] INFO  nextflow.Session - [71/0434e4] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (149)
May-11 01:57:59.008 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 228; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (150); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/28/c77d99cbe486e598c57dc54aded5ff]
May-11 01:57:59.010 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:57:59.010 [Task submitter] INFO  nextflow.Session - [8c/d7fe1c] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (158)
May-11 01:58:05.144 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 255; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (177); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/25/660ceadd68806979821574b818a90c]
May-11 01:58:05.146 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:05.147 [Task submitter] INFO  nextflow.Session - [b4/6449c0] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (154)
May-11 01:58:05.489 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 216; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (138); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/15/232be3d4712c4dda8cc31afb066272]
May-11 01:58:05.491 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:05.491 [Task submitter] INFO  nextflow.Session - [2f/7cd1ee] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (152)
May-11 01:58:05.665 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 243; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (165); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/63/5494324304353ac2f858bcfa2dd9cc]
May-11 01:58:05.667 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:05.667 [Task submitter] INFO  nextflow.Session - [17/7044dd] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (155)
May-11 01:58:10.160 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 227; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (149); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/71/0434e4cdb5a98c8e2fbd477249e9b5]
May-11 01:58:10.162 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:10.162 [Task submitter] INFO  nextflow.Session - [52/dba3b2] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (117)
May-11 01:58:11.417 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 236; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (158); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8c/d7fe1ce1b1ccaf50eea64985b99797]
May-11 01:58:11.419 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:11.419 [Task submitter] INFO  nextflow.Session - [d1/cc706d] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (126)
May-11 01:58:18.345 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 232; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (154); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b4/6449c00f8500605e38398237db4f86]
May-11 01:58:18.351 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:18.351 [Task submitter] INFO  nextflow.Session - [15/a26545] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (183)
May-11 01:58:18.669 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 233; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (155); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/17/7044dd2a063c6bc1a948653cd46bd7]
May-11 01:58:18.672 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:18.672 [Task submitter] INFO  nextflow.Session - [b9/789b99] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (132)
May-11 01:58:18.769 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 230; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (152); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2f/7cd1eebfe45ac37a4e13083b338ba5]
May-11 01:58:18.772 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:18.772 [Task submitter] INFO  nextflow.Session - [bf/934fc4] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (129)
May-11 01:58:20.263 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 242; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (164); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5e/399b02cd60f6a62cafd0f18f274d23]
May-11 01:58:20.266 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:20.266 [Task submitter] INFO  nextflow.Session - [59/4fc750] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (173)
May-11 01:58:23.010 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 195; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (117); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/52/dba3b2b68855461f0c2a2c21f3a4bb]
May-11 01:58:23.013 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:23.013 [Task submitter] INFO  nextflow.Session - [ea/47a38e] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (187)
May-11 01:58:23.879 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 204; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (126); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d1/cc706d078e4ac282ca2b6e6504135f]
May-11 01:58:23.881 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:23.881 [Task submitter] INFO  nextflow.Session - [3f/9e4cee] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (182)
May-11 01:58:31.192 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 261; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (183); status: RUNNING; exit: -; error: -; workDir: Ath_work2/15/a26545a7cc2cf02ef022de8b712dc6]
~> TaskHandler[id: 210; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (132); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b9/789b99057ae854b6c2ce79b5fb52b2]
~> TaskHandler[id: 207; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (129); status: RUNNING; exit: -; error: -; workDir: Ath_work2/bf/934fc4b18987d7251315ced3a15567]
~> TaskHandler[id: 251; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (173); status: RUNNING; exit: -; error: -; workDir: Ath_work2/59/4fc750ee93c27b1c12c17f153ad2e7]
~> TaskHandler[id: 265; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (187); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ea/47a38e94cc48ddf57fccd43e644617]
~> TaskHandler[id: 260; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (182); status: RUNNING; exit: -; error: -; workDir: Ath_work2/3f/9e4ceecd365bbb1b9d228cf3370154]
May-11 01:58:37.467 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 261; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (183); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/15/a26545a7cc2cf02ef022de8b712dc6]
May-11 01:58:37.469 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:37.469 [Task submitter] INFO  nextflow.Session - [aa/93cb92] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (140)
May-11 01:58:37.918 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 210; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (132); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b9/789b99057ae854b6c2ce79b5fb52b2]
May-11 01:58:37.920 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:37.920 [Task submitter] INFO  nextflow.Session - [a1/d62314] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (190)
May-11 01:58:38.119 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 207; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (129); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bf/934fc4b18987d7251315ced3a15567]
May-11 01:58:38.122 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:38.122 [Task submitter] INFO  nextflow.Session - [02/6ff77d] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (135)
May-11 01:58:41.786 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 265; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (187); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ea/47a38e94cc48ddf57fccd43e644617]
May-11 01:58:41.788 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:41.788 [Task submitter] INFO  nextflow.Session - [9c/e533e4] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (176)
May-11 01:58:42.532 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 260; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (182); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3f/9e4ceecd365bbb1b9d228cf3370154]
May-11 01:58:42.537 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:42.537 [Task submitter] INFO  nextflow.Session - [c1/beb04e] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (189)
May-11 01:58:45.186 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 251; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (173); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/59/4fc750ee93c27b1c12c17f153ad2e7]
May-11 01:58:45.189 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:45.190 [Task submitter] INFO  nextflow.Session - [73/25dc9b] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (180)
May-11 01:58:56.529 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 218; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (140); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/aa/93cb9285ef72545c93b49f7924fcc8]
May-11 01:58:56.532 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:56.532 [Task submitter] INFO  nextflow.Session - [c0/4333d3] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (181)
May-11 01:58:56.709 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 268; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (190); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a1/d62314f2cce2b20977e8bb8e999f3c]
May-11 01:58:56.715 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:56.715 [Task submitter] INFO  nextflow.Session - [6c/26e419] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (194)
May-11 01:58:57.157 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 213; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (135); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/02/6ff77dc763487f56fa1b18a83b8616]
May-11 01:58:57.159 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:58:57.159 [Task submitter] INFO  nextflow.Session - [89/cec9b1] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (195)
May-11 01:59:02.011 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 267; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (189); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c1/beb04efedb2e71b0ad50a770f5aece]
May-11 01:59:02.014 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:59:02.014 [Task submitter] INFO  nextflow.Session - [dd/154b10] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (137)
May-11 01:59:03.786 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 258; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (180); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/73/25dc9b6e824ac1b29cd52ea09dcf4f]
May-11 01:59:03.788 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:59:03.789 [Task submitter] INFO  nextflow.Session - [7c/546bcb] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (184)
May-11 01:59:04.314 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 254; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (176); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9c/e533e46406d03cbfc4f9bb2b8aad02]
May-11 01:59:04.316 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:59:04.316 [Task submitter] INFO  nextflow.Session - [06/2b3ee6] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (171)
May-11 01:59:15.438 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 259; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (181); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c0/4333d354958fd60332e48d64127ce0]
May-11 01:59:15.444 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:59:15.445 [Task submitter] INFO  nextflow.Session - [d3/ed17fa] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (162)
May-11 01:59:18.875 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 272; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (194); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6c/26e41956ca69d7e7a9db6c6e76e1d1]
May-11 01:59:18.878 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:59:18.878 [Task submitter] INFO  nextflow.Session - [b5/40c1aa] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (186)
May-11 01:59:19.121 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 273; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (195); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/89/cec9b1bda9362b51a86e1e74325ced]
May-11 01:59:19.123 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:59:19.123 [Task submitter] INFO  nextflow.Session - [86/c0ffe6] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (199)
May-11 01:59:20.124 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 106 -- tasks to be submitted are shown below
~> TaskHandler[id: 269; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (191); status: NEW; exit: -; error: -; workDir: Ath_work2/17/5a16cd48e4c6d31bb4221ab1af90a6]
~> TaskHandler[id: 271; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (193); status: NEW; exit: -; error: -; workDir: Ath_work2/9d/056ec8ea307d947835c05708fed3ed]
~> TaskHandler[id: 266; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (188); status: NEW; exit: -; error: -; workDir: Ath_work2/6f/ef752bd8d7cabcef6438b3d76fad40]
~> TaskHandler[id: 238; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (160); status: NEW; exit: -; error: -; workDir: Ath_work2/25/d58483c3cd960d66232dcb2c3c26b2]
~> TaskHandler[id: 257; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (179); status: NEW; exit: -; error: -; workDir: Ath_work2/ff/8ff9fa5df9d2d6d5135076422b59c3]
~> TaskHandler[id: 223; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (145); status: NEW; exit: -; error: -; workDir: Ath_work2/00/24421cb32ceab99290d5f4f03a870e]
~> TaskHandler[id: 248; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (170); status: NEW; exit: -; error: -; workDir: Ath_work2/41/734d36bb435afdcce884785436c76c]
~> TaskHandler[id: 278; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (200); status: NEW; exit: -; error: -; workDir: Ath_work2/54/afb7b93af3a2c223c254d979b6a9d3]
~> TaskHandler[id: 252; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (174); status: NEW; exit: -; error: -; workDir: Ath_work2/46/585df00876946ccb09403d532921c3]
~> TaskHandler[id: 256; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (178); status: NEW; exit: -; error: -; workDir: Ath_work2/7f/f87af5a66158bfefd004835cb0cbbd]
.. remaining tasks omitted.
May-11 01:59:20.995 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 215; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (137); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/dd/154b10ce12bfc5230685fdf4eeea2e]
May-11 01:59:20.998 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:59:20.998 [Task submitter] INFO  nextflow.Session - [17/5a16cd] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (191)
May-11 01:59:23.161 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 262; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (184); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7c/546bcbc1aaf94eaaf6356e002c53eb]
May-11 01:59:23.163 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:59:23.163 [Task submitter] INFO  nextflow.Session - [9d/056ec8] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (193)
May-11 01:59:26.708 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 249; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (171); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/06/2b3ee6e6d7734cea332b36e6494f0e]
May-11 01:59:26.711 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:59:26.711 [Task submitter] INFO  nextflow.Session - [6f/ef752b] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (188)
May-11 01:59:37.648 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 264; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (186); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b5/40c1aa7fb988b38ac65ed890d76414]
May-11 01:59:37.650 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:59:37.650 [Task submitter] INFO  nextflow.Session - [25/d58483] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (160)
May-11 01:59:37.674 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 277; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (199); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/86/c0ffe652764231eacf69e80df7c4d5]
May-11 01:59:37.676 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:59:37.677 [Task submitter] INFO  nextflow.Session - [ff/8ff9fa] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (179)
May-11 01:59:40.160 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 269; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (191); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/17/5a16cd48e4c6d31bb4221ab1af90a6]
May-11 01:59:40.163 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:59:40.163 [Task submitter] INFO  nextflow.Session - [00/24421c] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (145)
May-11 01:59:40.249 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 240; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (162); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d3/ed17fa06fb3b0d6271a32d1753e5ab]
May-11 01:59:40.252 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:59:40.252 [Task submitter] INFO  nextflow.Session - [41/734d36] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (170)
May-11 01:59:44.642 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 271; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (193); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9d/056ec8ea307d947835c05708fed3ed]
May-11 01:59:44.644 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:59:44.644 [Task submitter] INFO  nextflow.Session - [54/afb7b9] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (200)
May-11 01:59:46.062 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 266; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (188); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6f/ef752bd8d7cabcef6438b3d76fad40]
May-11 01:59:46.064 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:59:46.064 [Task submitter] INFO  nextflow.Session - [46/585df0] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (174)
May-11 01:59:50.404 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 238; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (160); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/25/d58483c3cd960d66232dcb2c3c26b2]
May-11 01:59:50.406 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:59:50.406 [Task submitter] INFO  nextflow.Session - [7f/f87af5] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (178)
May-11 01:59:52.655 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 223; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (145); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/00/24421cb32ceab99290d5f4f03a870e]
May-11 01:59:52.658 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:59:52.658 [Task submitter] INFO  nextflow.Session - [eb/67c35b] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (161)
May-11 01:59:56.557 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 257; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (179); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ff/8ff9fa5df9d2d6d5135076422b59c3]
May-11 01:59:56.560 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 01:59:56.560 [Task submitter] INFO  nextflow.Session - [42/3bc8bb] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (197)
May-11 02:00:04.553 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 248; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (170); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/41/734d36bb435afdcce884785436c76c]
May-11 02:00:04.555 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:00:04.555 [Task submitter] INFO  nextflow.Session - [d5/37e8d0] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (192)
May-11 02:00:06.383 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 278; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (200); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/54/afb7b93af3a2c223c254d979b6a9d3]
May-11 02:00:06.385 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:00:06.385 [Task submitter] INFO  nextflow.Session - [35/e5488c] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (196)
May-11 02:00:09.099 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 256; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (178); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7f/f87af5a66158bfefd004835cb0cbbd]
May-11 02:00:09.102 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:00:09.103 [Task submitter] INFO  nextflow.Session - [84/bcfb8f] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (185)
May-11 02:00:10.956 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 252; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (174); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/46/585df00876946ccb09403d532921c3]
May-11 02:00:10.958 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:00:10.958 [Task submitter] INFO  nextflow.Session - [aa/aa0b32] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (198)
May-11 02:00:14.352 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 239; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (161); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/eb/67c35b78d747fca1137ede24df2ade]
May-11 02:00:14.354 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:00:14.354 [Task submitter] INFO  nextflow.Session - [5d/0ee8d4] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (201)
May-11 02:00:15.503 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 275; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (197); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/42/3bc8bb336c1b71286d44907a6a6a4c]
May-11 02:00:15.506 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:00:15.506 [Task submitter] INFO  nextflow.Session - [b8/53e072] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (202)
May-11 02:00:23.536 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 270; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (192); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d5/37e8d0aed2aee557a58d063c5f5927]
May-11 02:00:23.539 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:00:23.539 [Task submitter] INFO  nextflow.Session - [9c/0086e8] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (203)
May-11 02:00:25.597 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 274; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (196); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/35/e5488c745dcc161b5e895feda5f56d]
May-11 02:00:25.601 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:00:25.601 [Task submitter] INFO  nextflow.Session - [49/996748] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (211)
May-11 02:00:28.271 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 263; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (185); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/84/bcfb8f705dd97d5ecd781406dc0362]
May-11 02:00:28.275 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:00:28.275 [Task submitter] INFO  nextflow.Session - [7a/56675c] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (206)
May-11 02:00:33.085 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 276; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (198); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/aa/aa0b32bdfc81e6860d4b654f631262]
May-11 02:00:33.088 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:00:33.088 [Task submitter] INFO  nextflow.Session - [d0/607c3c] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (209)
May-11 02:00:36.651 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 279; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (201); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5d/0ee8d45e53476ab32c5408ed2562aa]
May-11 02:00:36.654 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:00:36.654 [Task submitter] INFO  nextflow.Session - [41/948517] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (212)
May-11 02:00:37.553 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 280; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (202); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b8/53e0722519396613cbf81ee0b058b7]
May-11 02:00:37.556 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:00:37.556 [Task submitter] INFO  nextflow.Session - [83/87cab8] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (210)
May-11 02:00:44.296 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 289; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (211); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/49/99674801d86ce1e205d55c4e032ebf]
May-11 02:00:44.298 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:00:44.298 [Task submitter] INFO  nextflow.Session - [c7/17c38a] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (207)
May-11 02:00:45.857 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 281; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (203); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9c/0086e8c5aef81cf74a07479ea370d7]
May-11 02:00:45.859 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:00:45.859 [Task submitter] INFO  nextflow.Session - [49/1241de] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (208)
May-11 02:00:49.800 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 284; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (206); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7a/56675c35e38455571419957209e7b9]
May-11 02:00:49.803 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:00:49.803 [Task submitter] INFO  nextflow.Session - [5d/c756d5] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (205)
May-11 02:00:52.031 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 287; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (209); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d0/607c3c3dc5c4f1418d8c39e0095e70]
May-11 02:00:52.033 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:00:52.033 [Task submitter] INFO  nextflow.Session - [2e/c530e0] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (214)
May-11 02:00:56.104 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 290; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (212); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/41/9485177e47b6d6a54ecc792a2a09a9]
May-11 02:00:56.107 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:00:56.107 [Task submitter] INFO  nextflow.Session - [ff/7a58f6] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (218)
May-11 02:00:56.602 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 288; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (210); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/83/87cab85ab58750b73541a4c7a23bdb]
May-11 02:00:56.605 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:00:56.605 [Task submitter] INFO  nextflow.Session - [97/c66d0d] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (204)
May-11 02:01:03.479 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 285; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (207); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c7/17c38a38dd0081cf7cfe6094f93dff]
May-11 02:01:03.482 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:03.482 [Task submitter] INFO  nextflow.Session - [32/1254f8] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (221)
May-11 02:01:07.704 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 286; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (208); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/49/1241de0000ba38d4ae800c643d6a4a]
May-11 02:01:07.707 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:07.707 [Task submitter] INFO  nextflow.Session - [d1/e5ab35] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (217)
May-11 02:01:10.386 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 292; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (214); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2e/c530e062d19c5a34ccd26453e195a2]
May-11 02:01:10.389 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:10.389 [Task submitter] INFO  nextflow.Session - [96/a625c0] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (228)
May-11 02:01:11.551 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 283; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (205); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5d/c756d5d9d13005f76348ff4ab5277a]
May-11 02:01:11.554 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:11.554 [Task submitter] INFO  nextflow.Session - [37/300bcd] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (215)
May-11 02:01:15.398 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 296; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (218); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ff/7a58f67cfff41d14dadd8de2d22d5b]
May-11 02:01:15.400 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:15.400 [Task submitter] INFO  nextflow.Session - [34/c9706b] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (225)
May-11 02:01:16.050 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 282; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (204); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/97/c66d0de87f3916f0ac5a8cbe8d9302]
May-11 02:01:16.052 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:16.052 [Task submitter] INFO  nextflow.Session - [77/5e1798] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (213)
May-11 02:01:21.918 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 299; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (221); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/32/1254f8f4666ad749342055e4f6598d]
May-11 02:01:21.921 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:21.921 [Task submitter] INFO  nextflow.Session - [4c/daf89b] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (219)
May-11 02:01:25.981 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 306; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (228); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/96/a625c083294fbb0f0aae9fbd64c27b]
May-11 02:01:25.983 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:25.983 [Task submitter] INFO  nextflow.Session - [b2/120111] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (224)
May-11 02:01:26.231 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 295; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (217); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d1/e5ab353a00a4ac1701d426d30f6953]
May-11 02:01:26.233 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:26.233 [Task submitter] INFO  nextflow.Session - [15/688fc7] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (216)
May-11 02:01:30.257 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 293; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (215); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/37/300bcd71031fb473402ed58b10175b]
May-11 02:01:30.259 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:30.259 [Task submitter] INFO  nextflow.Session - [8e/e82c87] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (226)
May-11 02:01:30.896 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 303; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (225); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/34/c9706b4f50173cbfe842f4f37fd7d8]
May-11 02:01:30.898 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:30.898 [Task submitter] INFO  nextflow.Session - [f7/03813e] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (223)
May-11 02:01:34.453 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 291; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (213); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/77/5e17982e9a5e86465ec89c2c307428]
May-11 02:01:34.455 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:34.455 [Task submitter] INFO  nextflow.Session - [9a/aa3681] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (220)
May-11 02:01:40.037 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 297; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (219); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4c/daf89bd0b0227da76d319ff13e8caa]
May-11 02:01:40.039 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:40.039 [Task submitter] INFO  nextflow.Session - [a6/141530] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (229)
May-11 02:01:44.581 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 294; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (216); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/15/688fc7314f702fe8249205d902938a]
May-11 02:01:44.583 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:44.583 [Task submitter] INFO  nextflow.Session - [a4/b97797] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (227)
May-11 02:01:45.062 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 302; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (224); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b2/120111adbf1604d9c2693b2d372cb9]
May-11 02:01:45.065 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:45.065 [Task submitter] INFO  nextflow.Session - [ae/fb3d67] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (232)
May-11 02:01:46.480 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 304; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (226); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8e/e82c87858c03cc6934f877037bfc03]
May-11 02:01:46.483 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:46.483 [Task submitter] INFO  nextflow.Session - [f5/8adea4] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (222)
May-11 02:01:50.105 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 301; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (223); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f7/03813ed6c5c763f823152c5753f689]
May-11 02:01:50.107 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:50.107 [Task submitter] INFO  nextflow.Session - [49/531686] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (238)
May-11 02:01:53.355 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 298; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (220); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9a/aa368121c7d7e7607fad5c35d17f65]
May-11 02:01:53.357 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:53.357 [Task submitter] INFO  nextflow.Session - [09/c0602a] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (234)
May-11 02:01:55.366 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 307; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (229); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a6/141530cc38a801bb3bdfa9bb7ecbe3]
May-11 02:01:55.369 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:01:55.369 [Task submitter] INFO  nextflow.Session - [a0/65c2ba] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (230)
May-11 02:02:00.845 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 310; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (232); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ae/fb3d675b4a0373f974a154dd68218b]
May-11 02:02:00.848 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:00.848 [Task submitter] INFO  nextflow.Session - [d7/b30e94] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (239)
May-11 02:02:00.855 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 305; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (227); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a4/b97797af8b26bc4538eb57176442a7]
May-11 02:02:00.857 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:00.857 [Task submitter] INFO  nextflow.Session - [b7/a0be3f] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (236)
May-11 02:02:05.306 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 300; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (222); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f5/8adea49d02ef303976cbe907af3f94]
May-11 02:02:05.309 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:05.309 [Task submitter] INFO  nextflow.Session - [b8/7f7d41] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (237)
May-11 02:02:05.374 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 316; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (238); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/49/5316863c086becaa348ed84aa2779d]
May-11 02:02:05.377 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:05.377 [Task submitter] INFO  nextflow.Session - [5d/df650d] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (233)
May-11 02:02:09.489 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 312; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (234); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/09/c0602aba250e2e7a67f08cf745ce84]
May-11 02:02:09.492 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:09.492 [Task submitter] INFO  nextflow.Session - [60/4c5b9f] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (231)
May-11 02:02:11.126 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 308; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (230); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a0/65c2bae82f0a802c0da390294351c6]
May-11 02:02:11.129 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:11.129 [Task submitter] INFO  nextflow.Session - [ff/bea4dc] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (240)
May-11 02:02:16.665 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 317; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (239); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d7/b30e94d6dd7ac711c79fda9e99c581]
May-11 02:02:16.667 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:16.667 [Task submitter] INFO  nextflow.Session - [37/6dbb45] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (235)
May-11 02:02:16.715 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 314; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (236); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b7/a0be3fc76cffca8a33a724b0aa076d]
May-11 02:02:16.718 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:16.718 [Task submitter] INFO  nextflow.Session - [49/b9068f] Submitted process > egapx:winmask_plane:winmask_wnode:run_winmask_wnode (2)
May-11 02:02:20.827 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 311; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (233); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5d/df650dd3d949599462e8cd137d2c5c]
May-11 02:02:20.829 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:20.829 [Task submitter] INFO  nextflow.Session - [01/c9d4a1] Submitted process > egapx:winmask_plane:winmask_wnode:run_winmask_wnode (1)
May-11 02:02:20.859 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 315; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (237); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b8/7f7d41e53b653e04fa432336fa1726]
May-11 02:02:20.861 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:20.861 [Task submitter] INFO  nextflow.Session - [9e/63ae80] Submitted process > egapx:winmask_plane:winmask_wnode:run_winmask_wnode (3)
May-11 02:02:25.377 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 309; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (231); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/60/4c5b9f7f2682802d3b5f52a1866c66]
May-11 02:02:25.379 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:25.379 [Task submitter] INFO  nextflow.Session - [02/7385a7] Submitted process > egapx:winmask_plane:winmask_wnode:run_winmask_wnode (5)
May-11 02:02:27.267 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 318; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (240); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ff/bea4dc91bcfbc6a089ed65966e8f45]
May-11 02:02:27.277 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:27.277 [Task submitter] INFO  nextflow.Session - [97/488fe0] Submitted process > egapx:winmask_plane:winmask_wnode:run_winmask_wnode (4)
May-11 02:02:30.710 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 320; name: egapx:winmask_plane:winmask_wnode:run_winmask_wnode (2); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/49/b9068fb49fe1951d9d28fc9c65fa5a]
May-11 02:02:30.712 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:30.712 [Task submitter] INFO  nextflow.Session - [f8/60f7cd] Submitted process > egapx:target_proteins_plane:miniprot:run_miniprot (9)
May-11 02:02:32.153 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 313; name: egapx:rnaseq_long_plane:minimap2_fasta:minimap2_wnode_fasta (235); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/37/6dbb45d915866258115b78e9bc3915]
May-11 02:02:32.155 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:32.155 [Task submitter] INFO  nextflow.Session - [fc/3c3720] Submitted process > egapx:target_proteins_plane:miniprot:run_miniprot (10)
May-11 02:02:33.167 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:33.167 [Task submitter] INFO  nextflow.Session - [56/191ec2] Submitted process > egapx:rnaseq_long_plane:minimap2_fasta:gpx_qdump
May-11 02:02:35.221 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 321; name: egapx:winmask_plane:winmask_wnode:run_winmask_wnode (3); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9e/63ae8025ece64afb8a8bc7abf84759]
May-11 02:02:35.224 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:35.224 [Task submitter] INFO  nextflow.Session - [28/d00aeb] Submitted process > egapx:target_proteins_plane:miniprot:run_miniprot (5)
May-11 02:02:35.321 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 319; name: egapx:winmask_plane:winmask_wnode:run_winmask_wnode (1); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/01/c9d4a1fa400c4f333ed62627183c40]
May-11 02:02:35.324 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:35.324 [Task submitter] INFO  nextflow.Session - [15/060cbf] Submitted process > egapx:target_proteins_plane:miniprot:run_miniprot (3)
May-11 02:02:36.645 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 323; name: egapx:winmask_plane:winmask_wnode:run_winmask_wnode (5); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/02/7385a738abbefd31ab7eab9cfd052a]
May-11 02:02:36.649 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:36.649 [Task submitter] INFO  nextflow.Session - [d8/d11135] Submitted process > egapx:target_proteins_plane:miniprot:run_miniprot (4)
May-11 02:02:38.230 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 322; name: egapx:winmask_plane:winmask_wnode:run_winmask_wnode (4); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/97/488fe0009231647f377a8fda7f8df7]
May-11 02:02:38.234 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:38.234 [Task submitter] INFO  nextflow.Session - [83/8f53f0] Submitted process > egapx:target_proteins_plane:miniprot:run_miniprot (13)
May-11 02:02:39.237 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:39.237 [Task submitter] INFO  nextflow.Session - [ff/dbe550] Submitted process > egapx:winmask_plane:winmask_wnode:gpx_make_outputs
May-11 02:02:40.108 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 373; name: egapx:rnaseq_long_plane:minimap2_fasta:gpx_qdump; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/56/191ec2b9240a3a3a6fe16d9841971d]
May-11 02:02:41.112 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:41.112 [Task submitter] INFO  nextflow.Session - [df/a81af1] Submitted process > egapx:rnaseq_long_plane:filter_est_align:align_filter
May-11 02:02:46.705 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 374; name: egapx:winmask_plane:winmask_wnode:gpx_make_outputs; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ff/dbe5500473b56a88385e6a1e430cc1]
May-11 02:02:47.712 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:47.713 [Task submitter] INFO  nextflow.Session - [90/8b86c7] Submitted process > egapx:winmask_plane:winmask_wnode:combine_blast_db
May-11 02:02:57.410 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 376; name: egapx:winmask_plane:winmask_wnode:combine_blast_db; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/90/8b86c7f246f204ad7dedd067e888ef]
May-11 02:02:58.418 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:58.419 [Task submitter] INFO  nextflow.Session - [07/f1c733] Submitted process > egapx:winmask_plane:mask_assm_stats:run_mask_assm_stats
May-11 02:02:58.427 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:58.428 [Task submitter] INFO  nextflow.Session - [56/61f8b2] Submitted process > egapx:winmask_plane:prepare_masks:combine_blast_db_alt_softmask
May-11 02:02:58.435 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:02:58.435 [Task submitter] INFO  nextflow.Session - [7c/9b19df] Submitted process > egapx:winmask_plane:prepare_masks:combine_blast_db_softmask
May-11 02:03:07.920 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 330; name: egapx:target_proteins_plane:miniprot:run_miniprot (5); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/28/d00aeb19b3878ec2064d2703e5f782]
May-11 02:03:07.928 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:03:07.929 [Task submitter] INFO  nextflow.Session - [05/49f7b2] Submitted process > egapx:target_proteins_plane:miniprot:run_miniprot (8)
May-11 02:03:08.659 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 375; name: egapx:rnaseq_long_plane:filter_est_align:align_filter; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/df/a81af1175103623271e62b595d4ed9]
May-11 02:03:09.715 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:03:09.716 [Task submitter] INFO  nextflow.Session - [4a/999434] Submitted process > egapx:rnaseq_long_plane:filter_est_align:align_sort
May-11 02:03:09.994 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 379; name: egapx:winmask_plane:prepare_masks:combine_blast_db_softmask; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7c/9b19dfe81e4208b3bbd81499f00fef]
May-11 02:03:10.865 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 377; name: egapx:winmask_plane:prepare_masks:combine_blast_db_alt_softmask; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/56/61f8b2ac8dfd6f2e1e3ef4e7a7e7b8]
May-11 02:03:10.871 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:03:10.872 [Task submitter] INFO  nextflow.Session - [a3/8fd04d] Submitted process > egapx:winmask_plane:prepare_masks:convert_softmask
May-11 02:03:10.876 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:03:10.876 [Task submitter] INFO  nextflow.Session - [e1/be6ca6] Submitted process > egapx:winmask_plane:gc_makeblastdb:run_gc_makeblastdb
May-11 02:03:12.056 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 378; name: egapx:winmask_plane:mask_assm_stats:run_mask_assm_stats; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/07/f1c733802ceef8cf0ea5e34bd50b19]
May-11 02:03:18.855 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 380; name: egapx:rnaseq_long_plane:filter_est_align:align_sort; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4a/9994346d2791fccbe1ce2a44b1fc7b]
May-11 02:03:21.804 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 381; name: egapx:winmask_plane:prepare_masks:convert_softmask; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a3/8fd04ddb0861d41ce2f304b08509f2]
May-11 02:03:25.129 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 382; name: egapx:winmask_plane:gc_makeblastdb:run_gc_makeblastdb; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e1/be6ca6d801e861d5bb5b44707205b9]
May-11 02:03:31.244 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 334; name: egapx:target_proteins_plane:miniprot:run_miniprot (9); status: RUNNING; exit: -; error: -; workDir: Ath_work2/f8/60f7cd58e93512722a64366d3d4ba8]
~> TaskHandler[id: 335; name: egapx:target_proteins_plane:miniprot:run_miniprot (10); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/3c3720b9c8e8315098e63559898a1b]
~> TaskHandler[id: 328; name: egapx:target_proteins_plane:miniprot:run_miniprot (3); status: RUNNING; exit: -; error: -; workDir: Ath_work2/15/060cbfc1ab124f193132a9bd0ca187]
~> TaskHandler[id: 329; name: egapx:target_proteins_plane:miniprot:run_miniprot (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/d8/d11135d844a0c9881757d0d03c3510]
~> TaskHandler[id: 338; name: egapx:target_proteins_plane:miniprot:run_miniprot (13); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/8f53f042ddadbf7baacc619a7648f4]
~> TaskHandler[id: 333; name: egapx:target_proteins_plane:miniprot:run_miniprot (8); status: RUNNING; exit: -; error: -; workDir: Ath_work2/05/49f7b2c0e2414b66170f7256daccf2]
May-11 02:04:20.155 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 38 -- tasks to be submitted are shown below
~> TaskHandler[id: 332; name: egapx:target_proteins_plane:miniprot:run_miniprot (7); status: NEW; exit: -; error: -; workDir: Ath_work2/5b/bf2ebdd4f0ed4aab18fa106d6d402a]
~> TaskHandler[id: 327; name: egapx:target_proteins_plane:miniprot:run_miniprot (2); status: NEW; exit: -; error: -; workDir: Ath_work2/9e/85c300aa29a5ef91250ced8562538d]
~> TaskHandler[id: 331; name: egapx:target_proteins_plane:miniprot:run_miniprot (6); status: NEW; exit: -; error: -; workDir: Ath_work2/a9/49d2f05b8d0074eb7e5aaa7dbcad08]
~> TaskHandler[id: 337; name: egapx:target_proteins_plane:miniprot:run_miniprot (12); status: NEW; exit: -; error: -; workDir: Ath_work2/72/c824fe5a5f887ce17375c972031b07]
~> TaskHandler[id: 336; name: egapx:target_proteins_plane:miniprot:run_miniprot (11); status: NEW; exit: -; error: -; workDir: Ath_work2/52/2bea743c3d0da8fb70063a7a8d565b]
~> TaskHandler[id: 326; name: egapx:target_proteins_plane:miniprot:run_miniprot (1); status: NEW; exit: -; error: -; workDir: Ath_work2/e5/9a103bc9e6baf988666d008f4e1111]
~> TaskHandler[id: 355; name: egapx:rnaseq_short_plane:star:run_star (17); status: NEW; exit: -; error: -; workDir: Ath_work2/b6/16dd647107fb369d4af17447fc4917]
~> TaskHandler[id: 359; name: egapx:rnaseq_short_plane:star:run_star (21); status: NEW; exit: -; error: -; workDir: Ath_work2/a7/46c69edb746d2f4f0276cc91001f44]
~> TaskHandler[id: 350; name: egapx:rnaseq_short_plane:star:run_star (12); status: NEW; exit: -; error: -; workDir: Ath_work2/3f/63280fec24f8589a8d81f8bebd5ff7]
~> TaskHandler[id: 363; name: egapx:rnaseq_short_plane:star:run_star (25); status: NEW; exit: -; error: -; workDir: Ath_work2/ed/3365893d1adb103f32251fa19d5088]
.. remaining tasks omitted.
May-11 02:05:01.451 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 335; name: egapx:target_proteins_plane:miniprot:run_miniprot (10); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fc/3c3720b9c8e8315098e63559898a1b]
May-11 02:05:01.455 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:05:01.455 [Task submitter] INFO  nextflow.Session - [5b/bf2ebd] Submitted process > egapx:target_proteins_plane:miniprot:run_miniprot (7)
May-11 02:05:03.569 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 334; name: egapx:target_proteins_plane:miniprot:run_miniprot (9); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f8/60f7cd58e93512722a64366d3d4ba8]
May-11 02:05:03.572 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:05:03.572 [Task submitter] INFO  nextflow.Session - [9e/85c300] Submitted process > egapx:target_proteins_plane:miniprot:run_miniprot (2)
May-11 02:05:07.997 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 328; name: egapx:target_proteins_plane:miniprot:run_miniprot (3); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/15/060cbfc1ab124f193132a9bd0ca187]
May-11 02:05:08.002 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:05:08.002 [Task submitter] INFO  nextflow.Session - [a9/49d2f0] Submitted process > egapx:target_proteins_plane:miniprot:run_miniprot (6)
May-11 02:05:10.475 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 329; name: egapx:target_proteins_plane:miniprot:run_miniprot (4); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d8/d11135d844a0c9881757d0d03c3510]
May-11 02:05:10.478 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:05:10.478 [Task submitter] INFO  nextflow.Session - [72/c824fe] Submitted process > egapx:target_proteins_plane:miniprot:run_miniprot (12)
May-11 02:05:12.729 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 338; name: egapx:target_proteins_plane:miniprot:run_miniprot (13); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/83/8f53f042ddadbf7baacc619a7648f4]
May-11 02:05:12.734 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:05:12.734 [Task submitter] INFO  nextflow.Session - [52/2bea74] Submitted process > egapx:target_proteins_plane:miniprot:run_miniprot (11)
May-11 02:05:37.624 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 333; name: egapx:target_proteins_plane:miniprot:run_miniprot (8); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/05/49f7b2c0e2414b66170f7256daccf2]
May-11 02:05:37.629 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:05:37.630 [Task submitter] INFO  nextflow.Session - [e5/9a103b] Submitted process > egapx:target_proteins_plane:miniprot:run_miniprot (1)
May-11 02:07:32.726 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 327; name: egapx:target_proteins_plane:miniprot:run_miniprot (2); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9e/85c300aa29a5ef91250ced8562538d]
May-11 02:07:32.732 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:07:32.732 [Task submitter] INFO  nextflow.Session - [b6/16dd64] Submitted process > egapx:rnaseq_short_plane:star:run_star (17)
May-11 02:07:32.751 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 332; name: egapx:target_proteins_plane:miniprot:run_miniprot (7); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5b/bf2ebdd4f0ed4aab18fa106d6d402a]
May-11 02:07:32.754 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:07:32.754 [Task submitter] INFO  nextflow.Session - [a7/46c69e] Submitted process > egapx:rnaseq_short_plane:star:run_star (21)
May-11 02:07:40.351 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 336; name: egapx:target_proteins_plane:miniprot:run_miniprot (11); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/52/2bea743c3d0da8fb70063a7a8d565b]
May-11 02:07:40.354 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:07:40.354 [Task submitter] INFO  nextflow.Session - [3f/63280f] Submitted process > egapx:rnaseq_short_plane:star:run_star (12)
May-11 02:07:40.720 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 331; name: egapx:target_proteins_plane:miniprot:run_miniprot (6); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a9/49d2f05b8d0074eb7e5aaa7dbcad08]
May-11 02:07:40.722 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:07:40.722 [Task submitter] INFO  nextflow.Session - [ed/336589] Submitted process > egapx:rnaseq_short_plane:star:run_star (25)
May-11 02:07:42.357 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 337; name: egapx:target_proteins_plane:miniprot:run_miniprot (12); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/72/c824fe5a5f887ce17375c972031b07]
May-11 02:07:42.361 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:07:42.361 [Task submitter] INFO  nextflow.Session - [83/485fa1] Submitted process > egapx:rnaseq_short_plane:star:run_star (13)
May-11 02:08:06.687 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 326; name: egapx:target_proteins_plane:miniprot:run_miniprot (1); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e5/9a103bc9e6baf988666d008f4e1111]
May-11 02:08:06.691 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:08:06.691 [Task submitter] INFO  nextflow.Session - [38/78fcc1] Submitted process > egapx:rnaseq_short_plane:star:run_star (24)
May-11 02:08:31.335 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 355; name: egapx:rnaseq_short_plane:star:run_star (17); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b6/16dd647107fb369d4af17447fc4917]
~> TaskHandler[id: 359; name: egapx:rnaseq_short_plane:star:run_star (21); status: RUNNING; exit: -; error: -; workDir: Ath_work2/a7/46c69edb746d2f4f0276cc91001f44]
~> TaskHandler[id: 350; name: egapx:rnaseq_short_plane:star:run_star (12); status: RUNNING; exit: -; error: -; workDir: Ath_work2/3f/63280fec24f8589a8d81f8bebd5ff7]
~> TaskHandler[id: 363; name: egapx:rnaseq_short_plane:star:run_star (25); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ed/3365893d1adb103f32251fa19d5088]
~> TaskHandler[id: 351; name: egapx:rnaseq_short_plane:star:run_star (13); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/485fa1d07736cf97dd73cb87634d07]
~> TaskHandler[id: 362; name: egapx:rnaseq_short_plane:star:run_star (24); status: RUNNING; exit: -; error: -; workDir: Ath_work2/38/78fcc15802be0b7665b12423661497]
May-11 02:09:20.711 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 39 -- tasks to be submitted are shown below
~> TaskHandler[id: 346; name: egapx:rnaseq_short_plane:star:run_star (8); status: NEW; exit: -; error: -; workDir: Ath_work2/2c/844021a6ce35275efc93a2a1f866ab]
~> TaskHandler[id: 361; name: egapx:rnaseq_short_plane:star:run_star (23); status: NEW; exit: -; error: -; workDir: Ath_work2/7b/3309aad7a149cfbd57e3de68074a16]
~> TaskHandler[id: 358; name: egapx:rnaseq_short_plane:star:run_star (20); status: NEW; exit: -; error: -; workDir: Ath_work2/a1/decc920b293885e67885293897bdab]
~> TaskHandler[id: 349; name: egapx:rnaseq_short_plane:star:run_star (11); status: NEW; exit: -; error: -; workDir: Ath_work2/9b/d029e4aa71e2e1efa04ba4695e2058]
~> TaskHandler[id: 348; name: egapx:rnaseq_short_plane:star:run_star (10); status: NEW; exit: -; error: -; workDir: Ath_work2/8b/40e45287e9350559ae250b7f448724]
~> TaskHandler[id: 354; name: egapx:rnaseq_short_plane:star:run_star (16); status: NEW; exit: -; error: -; workDir: Ath_work2/c0/289ca07a85008f5ec14dc0a7d8ce1d]
~> TaskHandler[id: 356; name: egapx:rnaseq_short_plane:star:run_star (18); status: NEW; exit: -; error: -; workDir: Ath_work2/f6/257edc91d0faa83807f671cd355704]
~> TaskHandler[id: 347; name: egapx:rnaseq_short_plane:star:run_star (9); status: NEW; exit: -; error: -; workDir: Ath_work2/6f/7a72d6cb5f6a851922f22c8fbc6dac]
~> TaskHandler[id: 360; name: egapx:rnaseq_short_plane:star:run_star (22); status: NEW; exit: -; error: -; workDir: Ath_work2/e3/250e54651461993bf99c6140ad7463]
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: NEW; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
.. remaining tasks omitted.
May-11 02:12:20.578 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 359; name: egapx:rnaseq_short_plane:star:run_star (21); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a7/46c69edb746d2f4f0276cc91001f44]
May-11 02:12:20.582 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:12:20.582 [Task submitter] INFO  nextflow.Session - [2c/844021] Submitted process > egapx:rnaseq_short_plane:star:run_star (8)
May-11 02:13:31.389 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 355; name: egapx:rnaseq_short_plane:star:run_star (17); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b6/16dd647107fb369d4af17447fc4917]
~> TaskHandler[id: 350; name: egapx:rnaseq_short_plane:star:run_star (12); status: RUNNING; exit: -; error: -; workDir: Ath_work2/3f/63280fec24f8589a8d81f8bebd5ff7]
~> TaskHandler[id: 363; name: egapx:rnaseq_short_plane:star:run_star (25); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ed/3365893d1adb103f32251fa19d5088]
~> TaskHandler[id: 351; name: egapx:rnaseq_short_plane:star:run_star (13); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/485fa1d07736cf97dd73cb87634d07]
~> TaskHandler[id: 362; name: egapx:rnaseq_short_plane:star:run_star (24); status: RUNNING; exit: -; error: -; workDir: Ath_work2/38/78fcc15802be0b7665b12423661497]
~> TaskHandler[id: 346; name: egapx:rnaseq_short_plane:star:run_star (8); status: RUNNING; exit: -; error: -; workDir: Ath_work2/2c/844021a6ce35275efc93a2a1f866ab]
May-11 02:14:21.606 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 38 -- tasks to be submitted are shown below
~> TaskHandler[id: 361; name: egapx:rnaseq_short_plane:star:run_star (23); status: NEW; exit: -; error: -; workDir: Ath_work2/7b/3309aad7a149cfbd57e3de68074a16]
~> TaskHandler[id: 358; name: egapx:rnaseq_short_plane:star:run_star (20); status: NEW; exit: -; error: -; workDir: Ath_work2/a1/decc920b293885e67885293897bdab]
~> TaskHandler[id: 349; name: egapx:rnaseq_short_plane:star:run_star (11); status: NEW; exit: -; error: -; workDir: Ath_work2/9b/d029e4aa71e2e1efa04ba4695e2058]
~> TaskHandler[id: 348; name: egapx:rnaseq_short_plane:star:run_star (10); status: NEW; exit: -; error: -; workDir: Ath_work2/8b/40e45287e9350559ae250b7f448724]
~> TaskHandler[id: 354; name: egapx:rnaseq_short_plane:star:run_star (16); status: NEW; exit: -; error: -; workDir: Ath_work2/c0/289ca07a85008f5ec14dc0a7d8ce1d]
~> TaskHandler[id: 356; name: egapx:rnaseq_short_plane:star:run_star (18); status: NEW; exit: -; error: -; workDir: Ath_work2/f6/257edc91d0faa83807f671cd355704]
~> TaskHandler[id: 347; name: egapx:rnaseq_short_plane:star:run_star (9); status: NEW; exit: -; error: -; workDir: Ath_work2/6f/7a72d6cb5f6a851922f22c8fbc6dac]
~> TaskHandler[id: 360; name: egapx:rnaseq_short_plane:star:run_star (22); status: NEW; exit: -; error: -; workDir: Ath_work2/e3/250e54651461993bf99c6140ad7463]
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: NEW; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: NEW; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
.. remaining tasks omitted.
May-11 02:15:36.438 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 355; name: egapx:rnaseq_short_plane:star:run_star (17); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b6/16dd647107fb369d4af17447fc4917]
May-11 02:15:36.441 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:15:36.441 [Task submitter] INFO  nextflow.Session - [7b/3309aa] Submitted process > egapx:rnaseq_short_plane:star:run_star (23)
May-11 02:18:31.410 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 350; name: egapx:rnaseq_short_plane:star:run_star (12); status: RUNNING; exit: -; error: -; workDir: Ath_work2/3f/63280fec24f8589a8d81f8bebd5ff7]
~> TaskHandler[id: 363; name: egapx:rnaseq_short_plane:star:run_star (25); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ed/3365893d1adb103f32251fa19d5088]
~> TaskHandler[id: 351; name: egapx:rnaseq_short_plane:star:run_star (13); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/485fa1d07736cf97dd73cb87634d07]
~> TaskHandler[id: 362; name: egapx:rnaseq_short_plane:star:run_star (24); status: RUNNING; exit: -; error: -; workDir: Ath_work2/38/78fcc15802be0b7665b12423661497]
~> TaskHandler[id: 346; name: egapx:rnaseq_short_plane:star:run_star (8); status: RUNNING; exit: -; error: -; workDir: Ath_work2/2c/844021a6ce35275efc93a2a1f866ab]
~> TaskHandler[id: 361; name: egapx:rnaseq_short_plane:star:run_star (23); status: RUNNING; exit: -; error: -; workDir: Ath_work2/7b/3309aad7a149cfbd57e3de68074a16]
May-11 02:19:03.606 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 350; name: egapx:rnaseq_short_plane:star:run_star (12); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3f/63280fec24f8589a8d81f8bebd5ff7]
May-11 02:19:03.609 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:19:03.609 [Task submitter] INFO  nextflow.Session - [a1/decc92] Submitted process > egapx:rnaseq_short_plane:star:run_star (20)
May-11 02:19:21.614 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 36 -- tasks to be submitted are shown below
~> TaskHandler[id: 349; name: egapx:rnaseq_short_plane:star:run_star (11); status: NEW; exit: -; error: -; workDir: Ath_work2/9b/d029e4aa71e2e1efa04ba4695e2058]
~> TaskHandler[id: 348; name: egapx:rnaseq_short_plane:star:run_star (10); status: NEW; exit: -; error: -; workDir: Ath_work2/8b/40e45287e9350559ae250b7f448724]
~> TaskHandler[id: 354; name: egapx:rnaseq_short_plane:star:run_star (16); status: NEW; exit: -; error: -; workDir: Ath_work2/c0/289ca07a85008f5ec14dc0a7d8ce1d]
~> TaskHandler[id: 356; name: egapx:rnaseq_short_plane:star:run_star (18); status: NEW; exit: -; error: -; workDir: Ath_work2/f6/257edc91d0faa83807f671cd355704]
~> TaskHandler[id: 347; name: egapx:rnaseq_short_plane:star:run_star (9); status: NEW; exit: -; error: -; workDir: Ath_work2/6f/7a72d6cb5f6a851922f22c8fbc6dac]
~> TaskHandler[id: 360; name: egapx:rnaseq_short_plane:star:run_star (22); status: NEW; exit: -; error: -; workDir: Ath_work2/e3/250e54651461993bf99c6140ad7463]
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: NEW; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: NEW; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
~> TaskHandler[id: 364; name: egapx:rnaseq_short_plane:star:run_star (26); status: NEW; exit: -; error: -; workDir: Ath_work2/81/02c906a73766162f17b759176fd804]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: NEW; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
.. remaining tasks omitted.
May-11 02:23:31.468 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 363; name: egapx:rnaseq_short_plane:star:run_star (25); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ed/3365893d1adb103f32251fa19d5088]
~> TaskHandler[id: 351; name: egapx:rnaseq_short_plane:star:run_star (13); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/485fa1d07736cf97dd73cb87634d07]
~> TaskHandler[id: 362; name: egapx:rnaseq_short_plane:star:run_star (24); status: RUNNING; exit: -; error: -; workDir: Ath_work2/38/78fcc15802be0b7665b12423661497]
~> TaskHandler[id: 346; name: egapx:rnaseq_short_plane:star:run_star (8); status: RUNNING; exit: -; error: -; workDir: Ath_work2/2c/844021a6ce35275efc93a2a1f866ab]
~> TaskHandler[id: 361; name: egapx:rnaseq_short_plane:star:run_star (23); status: RUNNING; exit: -; error: -; workDir: Ath_work2/7b/3309aad7a149cfbd57e3de68074a16]
~> TaskHandler[id: 358; name: egapx:rnaseq_short_plane:star:run_star (20); status: RUNNING; exit: -; error: -; workDir: Ath_work2/a1/decc920b293885e67885293897bdab]
May-11 02:24:08.740 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 363; name: egapx:rnaseq_short_plane:star:run_star (25); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ed/3365893d1adb103f32251fa19d5088]
May-11 02:24:08.746 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:24:08.747 [Task submitter] INFO  nextflow.Session - [9b/d029e4] Submitted process > egapx:rnaseq_short_plane:star:run_star (11)
May-11 02:24:21.749 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 35 -- tasks to be submitted are shown below
~> TaskHandler[id: 348; name: egapx:rnaseq_short_plane:star:run_star (10); status: NEW; exit: -; error: -; workDir: Ath_work2/8b/40e45287e9350559ae250b7f448724]
~> TaskHandler[id: 354; name: egapx:rnaseq_short_plane:star:run_star (16); status: NEW; exit: -; error: -; workDir: Ath_work2/c0/289ca07a85008f5ec14dc0a7d8ce1d]
~> TaskHandler[id: 356; name: egapx:rnaseq_short_plane:star:run_star (18); status: NEW; exit: -; error: -; workDir: Ath_work2/f6/257edc91d0faa83807f671cd355704]
~> TaskHandler[id: 347; name: egapx:rnaseq_short_plane:star:run_star (9); status: NEW; exit: -; error: -; workDir: Ath_work2/6f/7a72d6cb5f6a851922f22c8fbc6dac]
~> TaskHandler[id: 360; name: egapx:rnaseq_short_plane:star:run_star (22); status: NEW; exit: -; error: -; workDir: Ath_work2/e3/250e54651461993bf99c6140ad7463]
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: NEW; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: NEW; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
~> TaskHandler[id: 364; name: egapx:rnaseq_short_plane:star:run_star (26); status: NEW; exit: -; error: -; workDir: Ath_work2/81/02c906a73766162f17b759176fd804]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: NEW; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: NEW; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
.. remaining tasks omitted.
May-11 02:28:31.521 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 351; name: egapx:rnaseq_short_plane:star:run_star (13); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/485fa1d07736cf97dd73cb87634d07]
~> TaskHandler[id: 362; name: egapx:rnaseq_short_plane:star:run_star (24); status: RUNNING; exit: -; error: -; workDir: Ath_work2/38/78fcc15802be0b7665b12423661497]
~> TaskHandler[id: 346; name: egapx:rnaseq_short_plane:star:run_star (8); status: RUNNING; exit: -; error: -; workDir: Ath_work2/2c/844021a6ce35275efc93a2a1f866ab]
~> TaskHandler[id: 361; name: egapx:rnaseq_short_plane:star:run_star (23); status: RUNNING; exit: -; error: -; workDir: Ath_work2/7b/3309aad7a149cfbd57e3de68074a16]
~> TaskHandler[id: 358; name: egapx:rnaseq_short_plane:star:run_star (20); status: RUNNING; exit: -; error: -; workDir: Ath_work2/a1/decc920b293885e67885293897bdab]
~> TaskHandler[id: 349; name: egapx:rnaseq_short_plane:star:run_star (11); status: RUNNING; exit: -; error: -; workDir: Ath_work2/9b/d029e4aa71e2e1efa04ba4695e2058]
May-11 02:29:21.812 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 35 -- tasks to be submitted are shown below
~> TaskHandler[id: 348; name: egapx:rnaseq_short_plane:star:run_star (10); status: NEW; exit: -; error: -; workDir: Ath_work2/8b/40e45287e9350559ae250b7f448724]
~> TaskHandler[id: 354; name: egapx:rnaseq_short_plane:star:run_star (16); status: NEW; exit: -; error: -; workDir: Ath_work2/c0/289ca07a85008f5ec14dc0a7d8ce1d]
~> TaskHandler[id: 356; name: egapx:rnaseq_short_plane:star:run_star (18); status: NEW; exit: -; error: -; workDir: Ath_work2/f6/257edc91d0faa83807f671cd355704]
~> TaskHandler[id: 347; name: egapx:rnaseq_short_plane:star:run_star (9); status: NEW; exit: -; error: -; workDir: Ath_work2/6f/7a72d6cb5f6a851922f22c8fbc6dac]
~> TaskHandler[id: 360; name: egapx:rnaseq_short_plane:star:run_star (22); status: NEW; exit: -; error: -; workDir: Ath_work2/e3/250e54651461993bf99c6140ad7463]
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: NEW; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: NEW; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
~> TaskHandler[id: 364; name: egapx:rnaseq_short_plane:star:run_star (26); status: NEW; exit: -; error: -; workDir: Ath_work2/81/02c906a73766162f17b759176fd804]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: NEW; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: NEW; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
.. remaining tasks omitted.
May-11 02:29:34.530 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 351; name: egapx:rnaseq_short_plane:star:run_star (13); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/83/485fa1d07736cf97dd73cb87634d07]
May-11 02:29:34.533 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:29:34.533 [Task submitter] INFO  nextflow.Session - [8b/40e452] Submitted process > egapx:rnaseq_short_plane:star:run_star (10)
May-11 02:32:11.060 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 362; name: egapx:rnaseq_short_plane:star:run_star (24); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/38/78fcc15802be0b7665b12423661497]
May-11 02:32:11.063 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:32:11.063 [Task submitter] INFO  nextflow.Session - [c0/289ca0] Submitted process > egapx:rnaseq_short_plane:star:run_star (16)
May-11 02:33:31.575 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 346; name: egapx:rnaseq_short_plane:star:run_star (8); status: RUNNING; exit: -; error: -; workDir: Ath_work2/2c/844021a6ce35275efc93a2a1f866ab]
~> TaskHandler[id: 361; name: egapx:rnaseq_short_plane:star:run_star (23); status: RUNNING; exit: -; error: -; workDir: Ath_work2/7b/3309aad7a149cfbd57e3de68074a16]
~> TaskHandler[id: 358; name: egapx:rnaseq_short_plane:star:run_star (20); status: RUNNING; exit: -; error: -; workDir: Ath_work2/a1/decc920b293885e67885293897bdab]
~> TaskHandler[id: 349; name: egapx:rnaseq_short_plane:star:run_star (11); status: RUNNING; exit: -; error: -; workDir: Ath_work2/9b/d029e4aa71e2e1efa04ba4695e2058]
~> TaskHandler[id: 348; name: egapx:rnaseq_short_plane:star:run_star (10); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8b/40e45287e9350559ae250b7f448724]
~> TaskHandler[id: 354; name: egapx:rnaseq_short_plane:star:run_star (16); status: RUNNING; exit: -; error: -; workDir: Ath_work2/c0/289ca07a85008f5ec14dc0a7d8ce1d]
May-11 02:34:22.092 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 33 -- tasks to be submitted are shown below
~> TaskHandler[id: 356; name: egapx:rnaseq_short_plane:star:run_star (18); status: NEW; exit: -; error: -; workDir: Ath_work2/f6/257edc91d0faa83807f671cd355704]
~> TaskHandler[id: 347; name: egapx:rnaseq_short_plane:star:run_star (9); status: NEW; exit: -; error: -; workDir: Ath_work2/6f/7a72d6cb5f6a851922f22c8fbc6dac]
~> TaskHandler[id: 360; name: egapx:rnaseq_short_plane:star:run_star (22); status: NEW; exit: -; error: -; workDir: Ath_work2/e3/250e54651461993bf99c6140ad7463]
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: NEW; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: NEW; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
~> TaskHandler[id: 364; name: egapx:rnaseq_short_plane:star:run_star (26); status: NEW; exit: -; error: -; workDir: Ath_work2/81/02c906a73766162f17b759176fd804]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: NEW; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: NEW; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
~> TaskHandler[id: 366; name: egapx:rnaseq_short_plane:star:run_star (28); status: NEW; exit: -; error: -; workDir: Ath_work2/5b/60a22ffd55b9a3f3ef3848b69d4a3b]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: NEW; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
.. remaining tasks omitted.
May-11 02:37:56.341 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 346; name: egapx:rnaseq_short_plane:star:run_star (8); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2c/844021a6ce35275efc93a2a1f866ab]
May-11 02:37:56.345 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:37:56.345 [Task submitter] INFO  nextflow.Session - [f6/257edc] Submitted process > egapx:rnaseq_short_plane:star:run_star (18)
May-11 02:38:31.599 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 361; name: egapx:rnaseq_short_plane:star:run_star (23); status: RUNNING; exit: -; error: -; workDir: Ath_work2/7b/3309aad7a149cfbd57e3de68074a16]
~> TaskHandler[id: 358; name: egapx:rnaseq_short_plane:star:run_star (20); status: RUNNING; exit: -; error: -; workDir: Ath_work2/a1/decc920b293885e67885293897bdab]
~> TaskHandler[id: 349; name: egapx:rnaseq_short_plane:star:run_star (11); status: RUNNING; exit: -; error: -; workDir: Ath_work2/9b/d029e4aa71e2e1efa04ba4695e2058]
~> TaskHandler[id: 348; name: egapx:rnaseq_short_plane:star:run_star (10); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8b/40e45287e9350559ae250b7f448724]
~> TaskHandler[id: 354; name: egapx:rnaseq_short_plane:star:run_star (16); status: RUNNING; exit: -; error: -; workDir: Ath_work2/c0/289ca07a85008f5ec14dc0a7d8ce1d]
~> TaskHandler[id: 356; name: egapx:rnaseq_short_plane:star:run_star (18); status: RUNNING; exit: -; error: -; workDir: Ath_work2/f6/257edc91d0faa83807f671cd355704]
May-11 02:39:22.365 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 32 -- tasks to be submitted are shown below
~> TaskHandler[id: 347; name: egapx:rnaseq_short_plane:star:run_star (9); status: NEW; exit: -; error: -; workDir: Ath_work2/6f/7a72d6cb5f6a851922f22c8fbc6dac]
~> TaskHandler[id: 360; name: egapx:rnaseq_short_plane:star:run_star (22); status: NEW; exit: -; error: -; workDir: Ath_work2/e3/250e54651461993bf99c6140ad7463]
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: NEW; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: NEW; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
~> TaskHandler[id: 364; name: egapx:rnaseq_short_plane:star:run_star (26); status: NEW; exit: -; error: -; workDir: Ath_work2/81/02c906a73766162f17b759176fd804]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: NEW; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: NEW; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
~> TaskHandler[id: 366; name: egapx:rnaseq_short_plane:star:run_star (28); status: NEW; exit: -; error: -; workDir: Ath_work2/5b/60a22ffd55b9a3f3ef3848b69d4a3b]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: NEW; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 369; name: egapx:rnaseq_short_plane:star:run_star (31); status: NEW; exit: -; error: -; workDir: Ath_work2/37/374fe28c77996a1fee97424562e16c]
.. remaining tasks omitted.
May-11 02:43:31.675 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 361; name: egapx:rnaseq_short_plane:star:run_star (23); status: RUNNING; exit: -; error: -; workDir: Ath_work2/7b/3309aad7a149cfbd57e3de68074a16]
~> TaskHandler[id: 358; name: egapx:rnaseq_short_plane:star:run_star (20); status: RUNNING; exit: -; error: -; workDir: Ath_work2/a1/decc920b293885e67885293897bdab]
~> TaskHandler[id: 349; name: egapx:rnaseq_short_plane:star:run_star (11); status: RUNNING; exit: -; error: -; workDir: Ath_work2/9b/d029e4aa71e2e1efa04ba4695e2058]
~> TaskHandler[id: 348; name: egapx:rnaseq_short_plane:star:run_star (10); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8b/40e45287e9350559ae250b7f448724]
~> TaskHandler[id: 354; name: egapx:rnaseq_short_plane:star:run_star (16); status: RUNNING; exit: -; error: -; workDir: Ath_work2/c0/289ca07a85008f5ec14dc0a7d8ce1d]
~> TaskHandler[id: 356; name: egapx:rnaseq_short_plane:star:run_star (18); status: RUNNING; exit: -; error: -; workDir: Ath_work2/f6/257edc91d0faa83807f671cd355704]
May-11 02:44:07.212 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 361; name: egapx:rnaseq_short_plane:star:run_star (23); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7b/3309aad7a149cfbd57e3de68074a16]
May-11 02:44:07.217 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:44:07.217 [Task submitter] INFO  nextflow.Session - [6f/7a72d6] Submitted process > egapx:rnaseq_short_plane:star:run_star (9)
May-11 02:44:23.221 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 31 -- tasks to be submitted are shown below
~> TaskHandler[id: 360; name: egapx:rnaseq_short_plane:star:run_star (22); status: NEW; exit: -; error: -; workDir: Ath_work2/e3/250e54651461993bf99c6140ad7463]
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: NEW; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: NEW; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
~> TaskHandler[id: 364; name: egapx:rnaseq_short_plane:star:run_star (26); status: NEW; exit: -; error: -; workDir: Ath_work2/81/02c906a73766162f17b759176fd804]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: NEW; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: NEW; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
~> TaskHandler[id: 366; name: egapx:rnaseq_short_plane:star:run_star (28); status: NEW; exit: -; error: -; workDir: Ath_work2/5b/60a22ffd55b9a3f3ef3848b69d4a3b]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: NEW; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 369; name: egapx:rnaseq_short_plane:star:run_star (31); status: NEW; exit: -; error: -; workDir: Ath_work2/37/374fe28c77996a1fee97424562e16c]
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: NEW; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
.. remaining tasks omitted.
May-11 02:48:31.771 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 358; name: egapx:rnaseq_short_plane:star:run_star (20); status: RUNNING; exit: -; error: -; workDir: Ath_work2/a1/decc920b293885e67885293897bdab]
~> TaskHandler[id: 349; name: egapx:rnaseq_short_plane:star:run_star (11); status: RUNNING; exit: -; error: -; workDir: Ath_work2/9b/d029e4aa71e2e1efa04ba4695e2058]
~> TaskHandler[id: 348; name: egapx:rnaseq_short_plane:star:run_star (10); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8b/40e45287e9350559ae250b7f448724]
~> TaskHandler[id: 354; name: egapx:rnaseq_short_plane:star:run_star (16); status: RUNNING; exit: -; error: -; workDir: Ath_work2/c0/289ca07a85008f5ec14dc0a7d8ce1d]
~> TaskHandler[id: 356; name: egapx:rnaseq_short_plane:star:run_star (18); status: RUNNING; exit: -; error: -; workDir: Ath_work2/f6/257edc91d0faa83807f671cd355704]
~> TaskHandler[id: 347; name: egapx:rnaseq_short_plane:star:run_star (9); status: RUNNING; exit: -; error: -; workDir: Ath_work2/6f/7a72d6cb5f6a851922f22c8fbc6dac]
May-11 02:49:23.280 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 31 -- tasks to be submitted are shown below
~> TaskHandler[id: 360; name: egapx:rnaseq_short_plane:star:run_star (22); status: NEW; exit: -; error: -; workDir: Ath_work2/e3/250e54651461993bf99c6140ad7463]
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: NEW; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: NEW; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
~> TaskHandler[id: 364; name: egapx:rnaseq_short_plane:star:run_star (26); status: NEW; exit: -; error: -; workDir: Ath_work2/81/02c906a73766162f17b759176fd804]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: NEW; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: NEW; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
~> TaskHandler[id: 366; name: egapx:rnaseq_short_plane:star:run_star (28); status: NEW; exit: -; error: -; workDir: Ath_work2/5b/60a22ffd55b9a3f3ef3848b69d4a3b]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: NEW; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 369; name: egapx:rnaseq_short_plane:star:run_star (31); status: NEW; exit: -; error: -; workDir: Ath_work2/37/374fe28c77996a1fee97424562e16c]
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: NEW; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
.. remaining tasks omitted.
May-11 02:51:21.307 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 349; name: egapx:rnaseq_short_plane:star:run_star (11); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9b/d029e4aa71e2e1efa04ba4695e2058]
May-11 02:51:21.312 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:51:21.312 [Task submitter] INFO  nextflow.Session - [e3/250e54] Submitted process > egapx:rnaseq_short_plane:star:run_star (22)
May-11 02:53:31.782 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 358; name: egapx:rnaseq_short_plane:star:run_star (20); status: RUNNING; exit: -; error: -; workDir: Ath_work2/a1/decc920b293885e67885293897bdab]
~> TaskHandler[id: 348; name: egapx:rnaseq_short_plane:star:run_star (10); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8b/40e45287e9350559ae250b7f448724]
~> TaskHandler[id: 354; name: egapx:rnaseq_short_plane:star:run_star (16); status: RUNNING; exit: -; error: -; workDir: Ath_work2/c0/289ca07a85008f5ec14dc0a7d8ce1d]
~> TaskHandler[id: 356; name: egapx:rnaseq_short_plane:star:run_star (18); status: RUNNING; exit: -; error: -; workDir: Ath_work2/f6/257edc91d0faa83807f671cd355704]
~> TaskHandler[id: 347; name: egapx:rnaseq_short_plane:star:run_star (9); status: RUNNING; exit: -; error: -; workDir: Ath_work2/6f/7a72d6cb5f6a851922f22c8fbc6dac]
~> TaskHandler[id: 360; name: egapx:rnaseq_short_plane:star:run_star (22); status: RUNNING; exit: -; error: -; workDir: Ath_work2/e3/250e54651461993bf99c6140ad7463]
May-11 02:54:23.348 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 30 -- tasks to be submitted are shown below
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: NEW; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: NEW; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
~> TaskHandler[id: 364; name: egapx:rnaseq_short_plane:star:run_star (26); status: NEW; exit: -; error: -; workDir: Ath_work2/81/02c906a73766162f17b759176fd804]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: NEW; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: NEW; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
~> TaskHandler[id: 366; name: egapx:rnaseq_short_plane:star:run_star (28); status: NEW; exit: -; error: -; workDir: Ath_work2/5b/60a22ffd55b9a3f3ef3848b69d4a3b]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: NEW; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 369; name: egapx:rnaseq_short_plane:star:run_star (31); status: NEW; exit: -; error: -; workDir: Ath_work2/37/374fe28c77996a1fee97424562e16c]
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: NEW; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: NEW; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
.. remaining tasks omitted.
May-11 02:57:07.822 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 358; name: egapx:rnaseq_short_plane:star:run_star (20); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a1/decc920b293885e67885293897bdab]
May-11 02:57:07.825 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 02:57:07.826 [Task submitter] INFO  nextflow.Session - [52/9fed28] Submitted process > egapx:rnaseq_short_plane:star:run_star (19)
May-11 02:58:31.845 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 348; name: egapx:rnaseq_short_plane:star:run_star (10); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8b/40e45287e9350559ae250b7f448724]
~> TaskHandler[id: 354; name: egapx:rnaseq_short_plane:star:run_star (16); status: RUNNING; exit: -; error: -; workDir: Ath_work2/c0/289ca07a85008f5ec14dc0a7d8ce1d]
~> TaskHandler[id: 356; name: egapx:rnaseq_short_plane:star:run_star (18); status: RUNNING; exit: -; error: -; workDir: Ath_work2/f6/257edc91d0faa83807f671cd355704]
~> TaskHandler[id: 347; name: egapx:rnaseq_short_plane:star:run_star (9); status: RUNNING; exit: -; error: -; workDir: Ath_work2/6f/7a72d6cb5f6a851922f22c8fbc6dac]
~> TaskHandler[id: 360; name: egapx:rnaseq_short_plane:star:run_star (22); status: RUNNING; exit: -; error: -; workDir: Ath_work2/e3/250e54651461993bf99c6140ad7463]
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: RUNNING; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
May-11 02:59:23.853 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 29 -- tasks to be submitted are shown below
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: NEW; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
~> TaskHandler[id: 364; name: egapx:rnaseq_short_plane:star:run_star (26); status: NEW; exit: -; error: -; workDir: Ath_work2/81/02c906a73766162f17b759176fd804]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: NEW; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: NEW; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
~> TaskHandler[id: 366; name: egapx:rnaseq_short_plane:star:run_star (28); status: NEW; exit: -; error: -; workDir: Ath_work2/5b/60a22ffd55b9a3f3ef3848b69d4a3b]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: NEW; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 369; name: egapx:rnaseq_short_plane:star:run_star (31); status: NEW; exit: -; error: -; workDir: Ath_work2/37/374fe28c77996a1fee97424562e16c]
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: NEW; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: NEW; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: NEW; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
.. remaining tasks omitted.
May-11 03:03:31.878 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 348; name: egapx:rnaseq_short_plane:star:run_star (10); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8b/40e45287e9350559ae250b7f448724]
~> TaskHandler[id: 354; name: egapx:rnaseq_short_plane:star:run_star (16); status: RUNNING; exit: -; error: -; workDir: Ath_work2/c0/289ca07a85008f5ec14dc0a7d8ce1d]
~> TaskHandler[id: 356; name: egapx:rnaseq_short_plane:star:run_star (18); status: RUNNING; exit: -; error: -; workDir: Ath_work2/f6/257edc91d0faa83807f671cd355704]
~> TaskHandler[id: 347; name: egapx:rnaseq_short_plane:star:run_star (9); status: RUNNING; exit: -; error: -; workDir: Ath_work2/6f/7a72d6cb5f6a851922f22c8fbc6dac]
~> TaskHandler[id: 360; name: egapx:rnaseq_short_plane:star:run_star (22); status: RUNNING; exit: -; error: -; workDir: Ath_work2/e3/250e54651461993bf99c6140ad7463]
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: RUNNING; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
May-11 03:04:23.906 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 29 -- tasks to be submitted are shown below
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: NEW; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
~> TaskHandler[id: 364; name: egapx:rnaseq_short_plane:star:run_star (26); status: NEW; exit: -; error: -; workDir: Ath_work2/81/02c906a73766162f17b759176fd804]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: NEW; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: NEW; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
~> TaskHandler[id: 366; name: egapx:rnaseq_short_plane:star:run_star (28); status: NEW; exit: -; error: -; workDir: Ath_work2/5b/60a22ffd55b9a3f3ef3848b69d4a3b]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: NEW; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 369; name: egapx:rnaseq_short_plane:star:run_star (31); status: NEW; exit: -; error: -; workDir: Ath_work2/37/374fe28c77996a1fee97424562e16c]
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: NEW; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: NEW; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: NEW; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
.. remaining tasks omitted.
May-11 03:07:21.720 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 348; name: egapx:rnaseq_short_plane:star:run_star (10); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8b/40e45287e9350559ae250b7f448724]
May-11 03:07:21.725 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 03:07:21.725 [Task submitter] INFO  nextflow.Session - [fb/f46a7a] Submitted process > egapx:rnaseq_short_plane:star:run_star (14)
May-11 03:08:31.902 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 354; name: egapx:rnaseq_short_plane:star:run_star (16); status: RUNNING; exit: -; error: -; workDir: Ath_work2/c0/289ca07a85008f5ec14dc0a7d8ce1d]
~> TaskHandler[id: 356; name: egapx:rnaseq_short_plane:star:run_star (18); status: RUNNING; exit: -; error: -; workDir: Ath_work2/f6/257edc91d0faa83807f671cd355704]
~> TaskHandler[id: 347; name: egapx:rnaseq_short_plane:star:run_star (9); status: RUNNING; exit: -; error: -; workDir: Ath_work2/6f/7a72d6cb5f6a851922f22c8fbc6dac]
~> TaskHandler[id: 360; name: egapx:rnaseq_short_plane:star:run_star (22); status: RUNNING; exit: -; error: -; workDir: Ath_work2/e3/250e54651461993bf99c6140ad7463]
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: RUNNING; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
May-11 03:09:24.749 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 28 -- tasks to be submitted are shown below
~> TaskHandler[id: 364; name: egapx:rnaseq_short_plane:star:run_star (26); status: NEW; exit: -; error: -; workDir: Ath_work2/81/02c906a73766162f17b759176fd804]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: NEW; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: NEW; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
~> TaskHandler[id: 366; name: egapx:rnaseq_short_plane:star:run_star (28); status: NEW; exit: -; error: -; workDir: Ath_work2/5b/60a22ffd55b9a3f3ef3848b69d4a3b]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: NEW; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 369; name: egapx:rnaseq_short_plane:star:run_star (31); status: NEW; exit: -; error: -; workDir: Ath_work2/37/374fe28c77996a1fee97424562e16c]
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: NEW; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: NEW; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: NEW; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: NEW; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
.. remaining tasks omitted.
May-11 03:13:00.639 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 356; name: egapx:rnaseq_short_plane:star:run_star (18); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f6/257edc91d0faa83807f671cd355704]
May-11 03:13:00.642 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 03:13:00.642 [Task submitter] INFO  nextflow.Session - [81/02c906] Submitted process > egapx:rnaseq_short_plane:star:run_star (26)
May-11 03:13:17.112 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 354; name: egapx:rnaseq_short_plane:star:run_star (16); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c0/289ca07a85008f5ec14dc0a7d8ce1d]
May-11 03:13:17.114 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 03:13:17.114 [Task submitter] INFO  nextflow.Session - [25/16ac25] Submitted process > egapx:rnaseq_short_plane:star:run_star (27)
May-11 03:13:31.929 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 347; name: egapx:rnaseq_short_plane:star:run_star (9); status: RUNNING; exit: -; error: -; workDir: Ath_work2/6f/7a72d6cb5f6a851922f22c8fbc6dac]
~> TaskHandler[id: 360; name: egapx:rnaseq_short_plane:star:run_star (22); status: RUNNING; exit: -; error: -; workDir: Ath_work2/e3/250e54651461993bf99c6140ad7463]
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: RUNNING; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
~> TaskHandler[id: 364; name: egapx:rnaseq_short_plane:star:run_star (26); status: RUNNING; exit: -; error: -; workDir: Ath_work2/81/02c906a73766162f17b759176fd804]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: RUNNING; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
May-11 03:14:25.128 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 26 -- tasks to be submitted are shown below
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: NEW; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
~> TaskHandler[id: 366; name: egapx:rnaseq_short_plane:star:run_star (28); status: NEW; exit: -; error: -; workDir: Ath_work2/5b/60a22ffd55b9a3f3ef3848b69d4a3b]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: NEW; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 369; name: egapx:rnaseq_short_plane:star:run_star (31); status: NEW; exit: -; error: -; workDir: Ath_work2/37/374fe28c77996a1fee97424562e16c]
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: NEW; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: NEW; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: NEW; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: NEW; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: NEW; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
.. remaining tasks omitted.
May-11 03:16:22.415 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 347; name: egapx:rnaseq_short_plane:star:run_star (9); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6f/7a72d6cb5f6a851922f22c8fbc6dac]
May-11 03:16:22.419 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 03:16:22.419 [Task submitter] INFO  nextflow.Session - [1f/5f1e60] Submitted process > egapx:rnaseq_short_plane:star:run_star (15)
May-11 03:18:31.971 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 360; name: egapx:rnaseq_short_plane:star:run_star (22); status: RUNNING; exit: -; error: -; workDir: Ath_work2/e3/250e54651461993bf99c6140ad7463]
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: RUNNING; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
~> TaskHandler[id: 364; name: egapx:rnaseq_short_plane:star:run_star (26); status: RUNNING; exit: -; error: -; workDir: Ath_work2/81/02c906a73766162f17b759176fd804]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: RUNNING; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: RUNNING; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
May-11 03:19:25.453 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 25 -- tasks to be submitted are shown below
~> TaskHandler[id: 366; name: egapx:rnaseq_short_plane:star:run_star (28); status: NEW; exit: -; error: -; workDir: Ath_work2/5b/60a22ffd55b9a3f3ef3848b69d4a3b]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: NEW; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 369; name: egapx:rnaseq_short_plane:star:run_star (31); status: NEW; exit: -; error: -; workDir: Ath_work2/37/374fe28c77996a1fee97424562e16c]
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: NEW; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: NEW; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: NEW; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: NEW; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: NEW; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: NEW; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
.. remaining tasks omitted.
May-11 03:22:41.904 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 360; name: egapx:rnaseq_short_plane:star:run_star (22); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e3/250e54651461993bf99c6140ad7463]
May-11 03:22:41.906 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 03:22:41.906 [Task submitter] INFO  nextflow.Session - [5b/60a22f] Submitted process > egapx:rnaseq_short_plane:star:run_star (28)
May-11 03:23:32.064 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: RUNNING; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
~> TaskHandler[id: 364; name: egapx:rnaseq_short_plane:star:run_star (26); status: RUNNING; exit: -; error: -; workDir: Ath_work2/81/02c906a73766162f17b759176fd804]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: RUNNING; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: RUNNING; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
~> TaskHandler[id: 366; name: egapx:rnaseq_short_plane:star:run_star (28); status: RUNNING; exit: -; error: -; workDir: Ath_work2/5b/60a22ffd55b9a3f3ef3848b69d4a3b]
May-11 03:24:25.924 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 24 -- tasks to be submitted are shown below
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: NEW; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 369; name: egapx:rnaseq_short_plane:star:run_star (31); status: NEW; exit: -; error: -; workDir: Ath_work2/37/374fe28c77996a1fee97424562e16c]
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: NEW; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: NEW; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: NEW; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: NEW; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: NEW; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: NEW; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: NEW; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
.. remaining tasks omitted.
May-11 03:27:57.246 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 364; name: egapx:rnaseq_short_plane:star:run_star (26); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/81/02c906a73766162f17b759176fd804]
May-11 03:27:57.249 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 03:27:57.249 [Task submitter] INFO  nextflow.Session - [8f/5e675f] Submitted process > egapx:rnaseq_short_plane:star:run_star (4)
May-11 03:28:32.099 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: RUNNING; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: RUNNING; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: RUNNING; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
~> TaskHandler[id: 366; name: egapx:rnaseq_short_plane:star:run_star (28); status: RUNNING; exit: -; error: -; workDir: Ath_work2/5b/60a22ffd55b9a3f3ef3848b69d4a3b]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
May-11 03:29:26.265 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 23 -- tasks to be submitted are shown below
~> TaskHandler[id: 369; name: egapx:rnaseq_short_plane:star:run_star (31); status: NEW; exit: -; error: -; workDir: Ath_work2/37/374fe28c77996a1fee97424562e16c]
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: NEW; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: NEW; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: NEW; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: NEW; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: NEW; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: NEW; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: NEW; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: NEW; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
.. remaining tasks omitted.
May-11 03:33:32.172 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: RUNNING; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: RUNNING; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: RUNNING; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
~> TaskHandler[id: 366; name: egapx:rnaseq_short_plane:star:run_star (28); status: RUNNING; exit: -; error: -; workDir: Ath_work2/5b/60a22ffd55b9a3f3ef3848b69d4a3b]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
May-11 03:34:26.325 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 23 -- tasks to be submitted are shown below
~> TaskHandler[id: 369; name: egapx:rnaseq_short_plane:star:run_star (31); status: NEW; exit: -; error: -; workDir: Ath_work2/37/374fe28c77996a1fee97424562e16c]
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: NEW; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: NEW; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: NEW; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: NEW; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: NEW; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: NEW; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: NEW; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: NEW; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
.. remaining tasks omitted.
May-11 03:38:32.208 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: RUNNING; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: RUNNING; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: RUNNING; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
~> TaskHandler[id: 366; name: egapx:rnaseq_short_plane:star:run_star (28); status: RUNNING; exit: -; error: -; workDir: Ath_work2/5b/60a22ffd55b9a3f3ef3848b69d4a3b]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
May-11 03:39:26.385 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 23 -- tasks to be submitted are shown below
~> TaskHandler[id: 369; name: egapx:rnaseq_short_plane:star:run_star (31); status: NEW; exit: -; error: -; workDir: Ath_work2/37/374fe28c77996a1fee97424562e16c]
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: NEW; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: NEW; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: NEW; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: NEW; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: NEW; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: NEW; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: NEW; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: NEW; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
.. remaining tasks omitted.
May-11 03:42:02.687 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 366; name: egapx:rnaseq_short_plane:star:run_star (28); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5b/60a22ffd55b9a3f3ef3848b69d4a3b]
May-11 03:42:02.691 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 03:42:02.691 [Task submitter] INFO  nextflow.Session - [37/374fe2] Submitted process > egapx:rnaseq_short_plane:star:run_star (31)
May-11 03:43:32.223 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: RUNNING; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: RUNNING; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: RUNNING; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 369; name: egapx:rnaseq_short_plane:star:run_star (31); status: RUNNING; exit: -; error: -; workDir: Ath_work2/37/374fe28c77996a1fee97424562e16c]
May-11 03:44:26.722 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 22 -- tasks to be submitted are shown below
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: NEW; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: NEW; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: NEW; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: NEW; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: NEW; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: NEW; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: NEW; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: NEW; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 388; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (6); status: NEW; exit: -; error: -; workDir: Ath_work2/bb/b9e2b74e8ec547a9e9005034d8ba42]
.. remaining tasks omitted.
May-11 03:48:32.305 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: RUNNING; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: RUNNING; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: RUNNING; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 369; name: egapx:rnaseq_short_plane:star:run_star (31); status: RUNNING; exit: -; error: -; workDir: Ath_work2/37/374fe28c77996a1fee97424562e16c]
May-11 03:49:26.768 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 22 -- tasks to be submitted are shown below
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: NEW; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: NEW; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: NEW; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: NEW; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: NEW; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: NEW; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: NEW; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: NEW; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 388; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (6); status: NEW; exit: -; error: -; workDir: Ath_work2/bb/b9e2b74e8ec547a9e9005034d8ba42]
.. remaining tasks omitted.
May-11 03:53:26.282 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 352; name: egapx:rnaseq_short_plane:star:run_star (14); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fb/f46a7a2a34ec709f8204df80d0b114]
May-11 03:53:26.286 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 03:53:26.286 [Task submitter] INFO  nextflow.Session - [0a/054470] Submitted process > egapx:rnaseq_short_plane:star:run_star (29)
May-11 03:53:32.392 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: RUNNING; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: RUNNING; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: RUNNING; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 369; name: egapx:rnaseq_short_plane:star:run_star (31); status: RUNNING; exit: -; error: -; workDir: Ath_work2/37/374fe28c77996a1fee97424562e16c]
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: RUNNING; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
May-11 03:54:27.297 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 21 -- tasks to be submitted are shown below
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: NEW; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: NEW; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: NEW; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: NEW; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: NEW; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: NEW; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: NEW; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 388; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (6); status: NEW; exit: -; error: -; workDir: Ath_work2/bb/b9e2b74e8ec547a9e9005034d8ba42]
~> TaskHandler[id: 387; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (5); status: NEW; exit: -; error: -; workDir: Ath_work2/e4/91971dcac0d6dc4f68009d03b66cad]
.. remaining tasks omitted.
May-11 03:55:12.159 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 369; name: egapx:rnaseq_short_plane:star:run_star (31); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/37/374fe28c77996a1fee97424562e16c]
May-11 03:55:12.162 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 03:55:12.162 [Task submitter] INFO  nextflow.Session - [ce/4f54f0] Submitted process > egapx:rnaseq_short_plane:star:run_star (6)
May-11 03:58:32.429 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: RUNNING; exit: -; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: RUNNING; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: RUNNING; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: RUNNING; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
May-11 03:59:28.211 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 20 -- tasks to be submitted are shown below
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: NEW; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: NEW; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: NEW; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: NEW; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: NEW; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: NEW; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 388; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (6); status: NEW; exit: -; error: -; workDir: Ath_work2/bb/b9e2b74e8ec547a9e9005034d8ba42]
~> TaskHandler[id: 387; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (5); status: NEW; exit: -; error: -; workDir: Ath_work2/e4/91971dcac0d6dc4f68009d03b66cad]
~> TaskHandler[id: 391; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (9); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/13a597aa221ac985f3dffa12fc7c48]
.. remaining tasks omitted.
May-11 04:02:13.737 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 357; name: egapx:rnaseq_short_plane:star:run_star (19); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/52/9fed28a860f76f4052f6a45fe795bc]
May-11 04:02:13.741 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 04:02:13.741 [Task submitter] INFO  nextflow.Session - [b9/16f6f4] Submitted process > egapx:rnaseq_short_plane:star:run_star (5)
May-11 04:03:32.447 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: RUNNING; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: RUNNING; exit: -; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: RUNNING; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
May-11 04:04:28.768 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 19 -- tasks to be submitted are shown below
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: NEW; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: NEW; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: NEW; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: NEW; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: NEW; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 388; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (6); status: NEW; exit: -; error: -; workDir: Ath_work2/bb/b9e2b74e8ec547a9e9005034d8ba42]
~> TaskHandler[id: 387; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (5); status: NEW; exit: -; error: -; workDir: Ath_work2/e4/91971dcac0d6dc4f68009d03b66cad]
~> TaskHandler[id: 391; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (9); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/13a597aa221ac985f3dffa12fc7c48]
~> TaskHandler[id: 392; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (10); status: NEW; exit: -; error: -; workDir: Ath_work2/a8/6a0dfca174f2c0aea384721471b236]
.. remaining tasks omitted.
May-11 04:06:22.217 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 353; name: egapx:rnaseq_short_plane:star:run_star (15); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1f/5f1e60acb627ef75a5a81adde325d0]
May-11 04:06:22.220 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 04:06:22.220 [Task submitter] INFO  nextflow.Session - [eb/a55413] Submitted process > egapx:rnaseq_short_plane:star:run_star (3)
May-11 04:08:32.505 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: RUNNING; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: RUNNING; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: RUNNING; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
May-11 04:09:29.256 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 18 -- tasks to be submitted are shown below
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: NEW; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: NEW; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: NEW; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: NEW; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 388; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (6); status: NEW; exit: -; error: -; workDir: Ath_work2/bb/b9e2b74e8ec547a9e9005034d8ba42]
~> TaskHandler[id: 387; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (5); status: NEW; exit: -; error: -; workDir: Ath_work2/e4/91971dcac0d6dc4f68009d03b66cad]
~> TaskHandler[id: 391; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (9); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/13a597aa221ac985f3dffa12fc7c48]
~> TaskHandler[id: 392; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (10); status: NEW; exit: -; error: -; workDir: Ath_work2/a8/6a0dfca174f2c0aea384721471b236]
~> TaskHandler[id: 385; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (3); status: NEW; exit: -; error: -; workDir: Ath_work2/e6/63eaea38f739e8f6f9027c1421a4b3]
.. remaining tasks omitted.
May-11 04:13:32.561 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: RUNNING; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: RUNNING; exit: -; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: RUNNING; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
May-11 04:13:41.359 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 367; name: egapx:rnaseq_short_plane:star:run_star (29); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0a/054470cb545b65dfe2686dddb0d9cd]
May-11 04:13:41.362 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 04:13:41.362 [Task submitter] INFO  nextflow.Session - [cd/a10674] Submitted process > egapx:rnaseq_short_plane:star:run_star (2)
May-11 04:14:29.371 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 17 -- tasks to be submitted are shown below
~> TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: NEW; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: NEW; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: NEW; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 388; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (6); status: NEW; exit: -; error: -; workDir: Ath_work2/bb/b9e2b74e8ec547a9e9005034d8ba42]
~> TaskHandler[id: 387; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (5); status: NEW; exit: -; error: -; workDir: Ath_work2/e4/91971dcac0d6dc4f68009d03b66cad]
~> TaskHandler[id: 391; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (9); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/13a597aa221ac985f3dffa12fc7c48]
~> TaskHandler[id: 392; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (10); status: NEW; exit: -; error: -; workDir: Ath_work2/a8/6a0dfca174f2c0aea384721471b236]
~> TaskHandler[id: 385; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (3); status: NEW; exit: -; error: -; workDir: Ath_work2/e6/63eaea38f739e8f6f9027c1421a4b3]
~> TaskHandler[id: 393; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (11); status: NEW; exit: -; error: -; workDir: Ath_work2/02/9e783752c8a89bc434de775db7646f]
.. remaining tasks omitted.
May-11 04:18:32.581 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: RUNNING; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: RUNNING; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: RUNNING; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
May-11 04:19:29.417 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 17 -- tasks to be submitted are shown below
~> TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: NEW; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: NEW; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: NEW; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 388; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (6); status: NEW; exit: -; error: -; workDir: Ath_work2/bb/b9e2b74e8ec547a9e9005034d8ba42]
~> TaskHandler[id: 387; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (5); status: NEW; exit: -; error: -; workDir: Ath_work2/e4/91971dcac0d6dc4f68009d03b66cad]
~> TaskHandler[id: 391; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (9); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/13a597aa221ac985f3dffa12fc7c48]
~> TaskHandler[id: 392; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (10); status: NEW; exit: -; error: -; workDir: Ath_work2/a8/6a0dfca174f2c0aea384721471b236]
~> TaskHandler[id: 385; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (3); status: NEW; exit: -; error: -; workDir: Ath_work2/e6/63eaea38f739e8f6f9027c1421a4b3]
~> TaskHandler[id: 393; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (11); status: NEW; exit: -; error: -; workDir: Ath_work2/02/9e783752c8a89bc434de775db7646f]
.. remaining tasks omitted.
May-11 04:23:32.587 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: RUNNING; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: RUNNING; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: RUNNING; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
May-11 04:24:29.469 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 17 -- tasks to be submitted are shown below
~> TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: NEW; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: NEW; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: NEW; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 388; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (6); status: NEW; exit: -; error: -; workDir: Ath_work2/bb/b9e2b74e8ec547a9e9005034d8ba42]
~> TaskHandler[id: 387; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (5); status: NEW; exit: -; error: -; workDir: Ath_work2/e4/91971dcac0d6dc4f68009d03b66cad]
~> TaskHandler[id: 391; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (9); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/13a597aa221ac985f3dffa12fc7c48]
~> TaskHandler[id: 392; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (10); status: NEW; exit: -; error: -; workDir: Ath_work2/a8/6a0dfca174f2c0aea384721471b236]
~> TaskHandler[id: 385; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (3); status: NEW; exit: -; error: -; workDir: Ath_work2/e6/63eaea38f739e8f6f9027c1421a4b3]
~> TaskHandler[id: 393; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (11); status: NEW; exit: -; error: -; workDir: Ath_work2/02/9e783752c8a89bc434de775db7646f]
.. remaining tasks omitted.
May-11 04:28:32.658 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: RUNNING; exit: -; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: RUNNING; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: RUNNING; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
May-11 04:28:33.908 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 365; name: egapx:rnaseq_short_plane:star:run_star (27); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/25/16ac257357a1dce6e52150804f6df9]
May-11 04:28:33.911 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 04:28:33.911 [Task submitter] INFO  nextflow.Session - [4d/c232d8] Submitted process > egapx:rnaseq_short_plane:star:run_star (30)
May-11 04:29:29.922 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 16 -- tasks to be submitted are shown below
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: NEW; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: NEW; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: NEW; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 388; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (6); status: NEW; exit: -; error: -; workDir: Ath_work2/bb/b9e2b74e8ec547a9e9005034d8ba42]
~> TaskHandler[id: 387; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (5); status: NEW; exit: -; error: -; workDir: Ath_work2/e4/91971dcac0d6dc4f68009d03b66cad]
~> TaskHandler[id: 391; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (9); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/13a597aa221ac985f3dffa12fc7c48]
~> TaskHandler[id: 392; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (10); status: NEW; exit: -; error: -; workDir: Ath_work2/a8/6a0dfca174f2c0aea384721471b236]
~> TaskHandler[id: 385; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (3); status: NEW; exit: -; error: -; workDir: Ath_work2/e6/63eaea38f739e8f6f9027c1421a4b3]
~> TaskHandler[id: 393; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (11); status: NEW; exit: -; error: -; workDir: Ath_work2/02/9e783752c8a89bc434de775db7646f]
~> TaskHandler[id: 394; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (12); status: NEW; exit: -; error: -; workDir: Ath_work2/aa/61700f330a98fab1f48b3415b54b6c]
.. remaining tasks omitted.
May-11 04:33:32.714 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: RUNNING; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: RUNNING; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: RUNNING; exit: -; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
May-11 04:34:29.973 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 16 -- tasks to be submitted are shown below
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: NEW; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: NEW; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: NEW; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 388; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (6); status: NEW; exit: -; error: -; workDir: Ath_work2/bb/b9e2b74e8ec547a9e9005034d8ba42]
~> TaskHandler[id: 387; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (5); status: NEW; exit: -; error: -; workDir: Ath_work2/e4/91971dcac0d6dc4f68009d03b66cad]
~> TaskHandler[id: 391; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (9); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/13a597aa221ac985f3dffa12fc7c48]
~> TaskHandler[id: 392; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (10); status: NEW; exit: -; error: -; workDir: Ath_work2/a8/6a0dfca174f2c0aea384721471b236]
~> TaskHandler[id: 385; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (3); status: NEW; exit: -; error: -; workDir: Ath_work2/e6/63eaea38f739e8f6f9027c1421a4b3]
~> TaskHandler[id: 393; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (11); status: NEW; exit: -; error: -; workDir: Ath_work2/02/9e783752c8a89bc434de775db7646f]
~> TaskHandler[id: 394; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (12); status: NEW; exit: -; error: -; workDir: Ath_work2/aa/61700f330a98fab1f48b3415b54b6c]
.. remaining tasks omitted.
May-11 04:38:32.772 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: RUNNING; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: RUNNING; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: RUNNING; exit: -; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
May-11 04:39:30.028 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 16 -- tasks to be submitted are shown below
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: NEW; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: NEW; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: NEW; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 388; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (6); status: NEW; exit: -; error: -; workDir: Ath_work2/bb/b9e2b74e8ec547a9e9005034d8ba42]
~> TaskHandler[id: 387; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (5); status: NEW; exit: -; error: -; workDir: Ath_work2/e4/91971dcac0d6dc4f68009d03b66cad]
~> TaskHandler[id: 391; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (9); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/13a597aa221ac985f3dffa12fc7c48]
~> TaskHandler[id: 392; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (10); status: NEW; exit: -; error: -; workDir: Ath_work2/a8/6a0dfca174f2c0aea384721471b236]
~> TaskHandler[id: 385; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (3); status: NEW; exit: -; error: -; workDir: Ath_work2/e6/63eaea38f739e8f6f9027c1421a4b3]
~> TaskHandler[id: 393; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (11); status: NEW; exit: -; error: -; workDir: Ath_work2/02/9e783752c8a89bc434de775db7646f]
~> TaskHandler[id: 394; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (12); status: NEW; exit: -; error: -; workDir: Ath_work2/aa/61700f330a98fab1f48b3415b54b6c]
.. remaining tasks omitted.
May-11 04:43:32.825 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
~> TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: RUNNING; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: RUNNING; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: RUNNING; exit: -; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
May-11 04:43:47.362 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 344; name: egapx:rnaseq_short_plane:star:run_star (6); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ce/4f54f0f7874cb1794d177d929d4bbd]
May-11 04:43:47.364 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 04:43:47.364 [Task submitter] INFO  nextflow.Session - [d0/13d96d] Submitted process > egapx:rnaseq_short_plane:star:run_star (32)
May-11 04:44:30.372 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 15 -- tasks to be submitted are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: NEW; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: NEW; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 388; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (6); status: NEW; exit: -; error: -; workDir: Ath_work2/bb/b9e2b74e8ec547a9e9005034d8ba42]
~> TaskHandler[id: 387; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (5); status: NEW; exit: -; error: -; workDir: Ath_work2/e4/91971dcac0d6dc4f68009d03b66cad]
~> TaskHandler[id: 391; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (9); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/13a597aa221ac985f3dffa12fc7c48]
~> TaskHandler[id: 392; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (10); status: NEW; exit: -; error: -; workDir: Ath_work2/a8/6a0dfca174f2c0aea384721471b236]
~> TaskHandler[id: 385; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (3); status: NEW; exit: -; error: -; workDir: Ath_work2/e6/63eaea38f739e8f6f9027c1421a4b3]
~> TaskHandler[id: 393; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (11); status: NEW; exit: -; error: -; workDir: Ath_work2/02/9e783752c8a89bc434de775db7646f]
~> TaskHandler[id: 394; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (12); status: NEW; exit: -; error: -; workDir: Ath_work2/aa/61700f330a98fab1f48b3415b54b6c]
~> TaskHandler[id: 389; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (7); status: NEW; exit: -; error: -; workDir: Ath_work2/3f/d3519988d76859394d3d35fdaa81c4]
.. remaining tasks omitted.
May-11 04:45:29.169 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 342; name: egapx:rnaseq_short_plane:star:run_star (4); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8f/5e675fe1b8f8837eb3d47da1285f93]
May-11 04:45:29.171 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 04:45:29.171 [Task submitter] INFO  nextflow.Session - [fc/57d90d] Submitted process > egapx:rnaseq_short_plane:star:run_star (7)
May-11 04:47:53.696 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 368; name: egapx:rnaseq_short_plane:star:run_star (30); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4d/c232d88829e0c5622a17a1e92f5ebc]
May-11 04:47:53.699 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 04:47:53.699 [Task submitter] INFO  nextflow.Session - [fd/2e9319] Submitted process > egapx:rnaseq_short_plane:star:run_star (1)
May-11 04:48:32.849 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: RUNNING; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: RUNNING; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: RUNNING; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
May-11 04:49:30.715 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 13 -- tasks to be submitted are shown below
~> TaskHandler[id: 388; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (6); status: NEW; exit: -; error: -; workDir: Ath_work2/bb/b9e2b74e8ec547a9e9005034d8ba42]
~> TaskHandler[id: 387; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (5); status: NEW; exit: -; error: -; workDir: Ath_work2/e4/91971dcac0d6dc4f68009d03b66cad]
~> TaskHandler[id: 391; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (9); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/13a597aa221ac985f3dffa12fc7c48]
~> TaskHandler[id: 392; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (10); status: NEW; exit: -; error: -; workDir: Ath_work2/a8/6a0dfca174f2c0aea384721471b236]
~> TaskHandler[id: 385; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (3); status: NEW; exit: -; error: -; workDir: Ath_work2/e6/63eaea38f739e8f6f9027c1421a4b3]
~> TaskHandler[id: 393; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (11); status: NEW; exit: -; error: -; workDir: Ath_work2/02/9e783752c8a89bc434de775db7646f]
~> TaskHandler[id: 394; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (12); status: NEW; exit: -; error: -; workDir: Ath_work2/aa/61700f330a98fab1f48b3415b54b6c]
~> TaskHandler[id: 389; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (7); status: NEW; exit: -; error: -; workDir: Ath_work2/3f/d3519988d76859394d3d35fdaa81c4]
~> TaskHandler[id: 390; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (8); status: NEW; exit: -; error: -; workDir: Ath_work2/c7/511a11d265900dc7591ae3621af888]
~> TaskHandler[id: 383; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (1); status: NEW; exit: -; error: -; workDir: Ath_work2/a7/1be43c29eb4a003dfbbafb295d2942]
.. remaining tasks omitted.
May-11 04:53:32.857 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: RUNNING; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: RUNNING; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: RUNNING; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
May-11 04:54:30.766 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 13 -- tasks to be submitted are shown below
~> TaskHandler[id: 388; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (6); status: NEW; exit: -; error: -; workDir: Ath_work2/bb/b9e2b74e8ec547a9e9005034d8ba42]
~> TaskHandler[id: 387; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (5); status: NEW; exit: -; error: -; workDir: Ath_work2/e4/91971dcac0d6dc4f68009d03b66cad]
~> TaskHandler[id: 391; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (9); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/13a597aa221ac985f3dffa12fc7c48]
~> TaskHandler[id: 392; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (10); status: NEW; exit: -; error: -; workDir: Ath_work2/a8/6a0dfca174f2c0aea384721471b236]
~> TaskHandler[id: 385; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (3); status: NEW; exit: -; error: -; workDir: Ath_work2/e6/63eaea38f739e8f6f9027c1421a4b3]
~> TaskHandler[id: 393; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (11); status: NEW; exit: -; error: -; workDir: Ath_work2/02/9e783752c8a89bc434de775db7646f]
~> TaskHandler[id: 394; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (12); status: NEW; exit: -; error: -; workDir: Ath_work2/aa/61700f330a98fab1f48b3415b54b6c]
~> TaskHandler[id: 389; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (7); status: NEW; exit: -; error: -; workDir: Ath_work2/3f/d3519988d76859394d3d35fdaa81c4]
~> TaskHandler[id: 390; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (8); status: NEW; exit: -; error: -; workDir: Ath_work2/c7/511a11d265900dc7591ae3621af888]
~> TaskHandler[id: 383; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (1); status: NEW; exit: -; error: -; workDir: Ath_work2/a7/1be43c29eb4a003dfbbafb295d2942]
.. remaining tasks omitted.
May-11 04:58:32.935 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: RUNNING; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: RUNNING; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: RUNNING; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
May-11 04:59:30.816 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 13 -- tasks to be submitted are shown below
~> TaskHandler[id: 388; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (6); status: NEW; exit: -; error: -; workDir: Ath_work2/bb/b9e2b74e8ec547a9e9005034d8ba42]
~> TaskHandler[id: 387; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (5); status: NEW; exit: -; error: -; workDir: Ath_work2/e4/91971dcac0d6dc4f68009d03b66cad]
~> TaskHandler[id: 391; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (9); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/13a597aa221ac985f3dffa12fc7c48]
~> TaskHandler[id: 392; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (10); status: NEW; exit: -; error: -; workDir: Ath_work2/a8/6a0dfca174f2c0aea384721471b236]
~> TaskHandler[id: 385; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (3); status: NEW; exit: -; error: -; workDir: Ath_work2/e6/63eaea38f739e8f6f9027c1421a4b3]
~> TaskHandler[id: 393; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (11); status: NEW; exit: -; error: -; workDir: Ath_work2/02/9e783752c8a89bc434de775db7646f]
~> TaskHandler[id: 394; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (12); status: NEW; exit: -; error: -; workDir: Ath_work2/aa/61700f330a98fab1f48b3415b54b6c]
~> TaskHandler[id: 389; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (7); status: NEW; exit: -; error: -; workDir: Ath_work2/3f/d3519988d76859394d3d35fdaa81c4]
~> TaskHandler[id: 390; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (8); status: NEW; exit: -; error: -; workDir: Ath_work2/c7/511a11d265900dc7591ae3621af888]
~> TaskHandler[id: 383; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (1); status: NEW; exit: -; error: -; workDir: Ath_work2/a7/1be43c29eb4a003dfbbafb295d2942]
.. remaining tasks omitted.
May-11 04:59:40.245 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 343; name: egapx:rnaseq_short_plane:star:run_star (5); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b9/16f6f4741b381a5fc98c372b465fa5]
May-11 04:59:40.248 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 04:59:40.249 [Task submitter] INFO  nextflow.Session - [bb/b9e2b7] Submitted process > egapx:target_proteins_plane:paf2asn:run_paf2asn (6)
May-11 05:02:47.501 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 388; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (6); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bb/b9e2b74e8ec547a9e9005034d8ba42]
May-11 05:02:47.504 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 05:02:47.504 [Task submitter] INFO  nextflow.Session - [e4/91971d] Submitted process > egapx:target_proteins_plane:paf2asn:run_paf2asn (5)
May-11 05:03:32.979 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: RUNNING; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: RUNNING; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: RUNNING; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 387; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (5); status: RUNNING; exit: -; error: -; workDir: Ath_work2/e4/91971dcac0d6dc4f68009d03b66cad]
May-11 05:03:38.948 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 387; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (5); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e4/91971dcac0d6dc4f68009d03b66cad]
May-11 05:03:38.951 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 05:03:38.951 [Task submitter] INFO  nextflow.Session - [4d/13a597] Submitted process > egapx:target_proteins_plane:paf2asn:run_paf2asn (9)
May-11 05:04:30.964 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 10 -- tasks to be submitted are shown below
~> TaskHandler[id: 392; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (10); status: NEW; exit: -; error: -; workDir: Ath_work2/a8/6a0dfca174f2c0aea384721471b236]
~> TaskHandler[id: 385; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (3); status: NEW; exit: -; error: -; workDir: Ath_work2/e6/63eaea38f739e8f6f9027c1421a4b3]
~> TaskHandler[id: 393; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (11); status: NEW; exit: -; error: -; workDir: Ath_work2/02/9e783752c8a89bc434de775db7646f]
~> TaskHandler[id: 394; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (12); status: NEW; exit: -; error: -; workDir: Ath_work2/aa/61700f330a98fab1f48b3415b54b6c]
~> TaskHandler[id: 389; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (7); status: NEW; exit: -; error: -; workDir: Ath_work2/3f/d3519988d76859394d3d35fdaa81c4]
~> TaskHandler[id: 390; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (8); status: NEW; exit: -; error: -; workDir: Ath_work2/c7/511a11d265900dc7591ae3621af888]
~> TaskHandler[id: 383; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (1); status: NEW; exit: -; error: -; workDir: Ath_work2/a7/1be43c29eb4a003dfbbafb295d2942]
~> TaskHandler[id: 395; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (13); status: NEW; exit: -; error: -; workDir: Ath_work2/de/1dedd860cd85a0a3b711ffdfea2ce1]
~> TaskHandler[id: 386; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (4); status: NEW; exit: -; error: -; workDir: Ath_work2/3e/823f6aac46455f81667664132ab56c]
~> TaskHandler[id: 384; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (2); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/12ec355fefcc21d80d1ef978efeea2]
May-11 05:06:40.624 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 391; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (9); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4d/13a597aa221ac985f3dffa12fc7c48]
May-11 05:06:40.626 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 05:06:40.626 [Task submitter] INFO  nextflow.Session - [a8/6a0dfc] Submitted process > egapx:target_proteins_plane:paf2asn:run_paf2asn (10)
May-11 05:08:32.979 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: RUNNING; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: RUNNING; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: RUNNING; exit: -; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 392; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (10); status: RUNNING; exit: -; error: -; workDir: Ath_work2/a8/6a0dfca174f2c0aea384721471b236]
May-11 05:09:31.654 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 9 -- tasks to be submitted are shown below
~> TaskHandler[id: 385; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (3); status: NEW; exit: -; error: -; workDir: Ath_work2/e6/63eaea38f739e8f6f9027c1421a4b3]
~> TaskHandler[id: 393; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (11); status: NEW; exit: -; error: -; workDir: Ath_work2/02/9e783752c8a89bc434de775db7646f]
~> TaskHandler[id: 394; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (12); status: NEW; exit: -; error: -; workDir: Ath_work2/aa/61700f330a98fab1f48b3415b54b6c]
~> TaskHandler[id: 389; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (7); status: NEW; exit: -; error: -; workDir: Ath_work2/3f/d3519988d76859394d3d35fdaa81c4]
~> TaskHandler[id: 390; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (8); status: NEW; exit: -; error: -; workDir: Ath_work2/c7/511a11d265900dc7591ae3621af888]
~> TaskHandler[id: 383; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (1); status: NEW; exit: -; error: -; workDir: Ath_work2/a7/1be43c29eb4a003dfbbafb295d2942]
~> TaskHandler[id: 395; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (13); status: NEW; exit: -; error: -; workDir: Ath_work2/de/1dedd860cd85a0a3b711ffdfea2ce1]
~> TaskHandler[id: 386; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (4); status: NEW; exit: -; error: -; workDir: Ath_work2/3e/823f6aac46455f81667664132ab56c]
~> TaskHandler[id: 384; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (2); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/12ec355fefcc21d80d1ef978efeea2]
May-11 05:09:39.295 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 392; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (10); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a8/6a0dfca174f2c0aea384721471b236]
May-11 05:09:39.297 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 05:09:39.297 [Task submitter] INFO  nextflow.Session - [e6/63eaea] Submitted process > egapx:target_proteins_plane:paf2asn:run_paf2asn (3)
May-11 05:11:29.808 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 370; name: egapx:rnaseq_short_plane:star:run_star (32); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d0/13d96d1022fa304b8388ff11f64208]
May-11 05:11:29.810 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 05:11:29.810 [Task submitter] INFO  nextflow.Session - [02/9e7837] Submitted process > egapx:target_proteins_plane:paf2asn:run_paf2asn (11)
May-11 05:12:41.141 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 385; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (3); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e6/63eaea38f739e8f6f9027c1421a4b3]
May-11 05:12:41.143 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 05:12:41.143 [Task submitter] INFO  nextflow.Session - [aa/61700f] Submitted process > egapx:target_proteins_plane:paf2asn:run_paf2asn (12)
May-11 05:13:33.030 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: RUNNING; exit: -; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: RUNNING; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 393; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (11); status: RUNNING; exit: -; error: -; workDir: Ath_work2/02/9e783752c8a89bc434de775db7646f]
~> TaskHandler[id: 394; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (12); status: RUNNING; exit: -; error: -; workDir: Ath_work2/aa/61700f330a98fab1f48b3415b54b6c]
May-11 05:14:32.166 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 6 -- tasks to be submitted are shown below
~> TaskHandler[id: 389; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (7); status: NEW; exit: -; error: -; workDir: Ath_work2/3f/d3519988d76859394d3d35fdaa81c4]
~> TaskHandler[id: 390; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (8); status: NEW; exit: -; error: -; workDir: Ath_work2/c7/511a11d265900dc7591ae3621af888]
~> TaskHandler[id: 383; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (1); status: NEW; exit: -; error: -; workDir: Ath_work2/a7/1be43c29eb4a003dfbbafb295d2942]
~> TaskHandler[id: 395; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (13); status: NEW; exit: -; error: -; workDir: Ath_work2/de/1dedd860cd85a0a3b711ffdfea2ce1]
~> TaskHandler[id: 386; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (4); status: NEW; exit: -; error: -; workDir: Ath_work2/3e/823f6aac46455f81667664132ab56c]
~> TaskHandler[id: 384; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (2); status: NEW; exit: -; error: -; workDir: Ath_work2/4d/12ec355fefcc21d80d1ef978efeea2]
May-11 05:14:32.517 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 393; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (11); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/02/9e783752c8a89bc434de775db7646f]
May-11 05:14:32.519 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 05:14:32.519 [Task submitter] INFO  nextflow.Session - [3f/d35199] Submitted process > egapx:target_proteins_plane:paf2asn:run_paf2asn (7)
May-11 05:14:44.654 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 341; name: egapx:rnaseq_short_plane:star:run_star (3); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/eb/a55413be8628847a94398edcbd110d]
May-11 05:14:44.656 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 05:14:44.656 [Task submitter] INFO  nextflow.Session - [c7/511a11] Submitted process > egapx:target_proteins_plane:paf2asn:run_paf2asn (8)
May-11 05:15:41.011 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 394; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (12); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/aa/61700f330a98fab1f48b3415b54b6c]
May-11 05:15:41.013 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 05:15:41.013 [Task submitter] INFO  nextflow.Session - [a7/1be43c] Submitted process > egapx:target_proteins_plane:paf2asn:run_paf2asn (1)
May-11 05:17:34.139 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 389; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (7); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3f/d3519988d76859394d3d35fdaa81c4]
May-11 05:17:34.141 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 05:17:34.141 [Task submitter] INFO  nextflow.Session - [de/1dedd8] Submitted process > egapx:target_proteins_plane:paf2asn:run_paf2asn (13)
May-11 05:17:43.354 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 390; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (8); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c7/511a11d265900dc7591ae3621af888]
May-11 05:17:43.355 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 05:17:43.356 [Task submitter] INFO  nextflow.Session - [3e/823f6a] Submitted process > egapx:target_proteins_plane:paf2asn:run_paf2asn (4)
May-11 05:18:33.130 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: RUNNING; exit: -; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 383; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/a7/1be43c29eb4a003dfbbafb295d2942]
~> TaskHandler[id: 395; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (13); status: RUNNING; exit: -; error: -; workDir: Ath_work2/de/1dedd860cd85a0a3b711ffdfea2ce1]
~> TaskHandler[id: 386; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/3e/823f6aac46455f81667664132ab56c]
May-11 05:18:49.508 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 383; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (1); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a7/1be43c29eb4a003dfbbafb295d2942]
May-11 05:18:49.511 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 05:18:49.511 [Task submitter] INFO  nextflow.Session - [4d/12ec35] Submitted process > egapx:target_proteins_plane:paf2asn:run_paf2asn (2)
May-11 05:20:36.727 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 395; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (13); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/de/1dedd860cd85a0a3b711ffdfea2ce1]
May-11 05:20:45.007 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 386; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (4); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3e/823f6aac46455f81667664132ab56c]
May-11 05:21:50.293 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 384; name: egapx:target_proteins_plane:paf2asn:run_paf2asn (2); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4d/12ec355fefcc21d80d1ef978efeea2]
May-11 05:21:51.721 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 05:21:51.721 [Task submitter] INFO  nextflow.Session - [68/97984d] Submitted process > egapx:target_proteins_plane:best_aligned_prot:run_best_aligned_prot
May-11 05:21:57.227 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 340; name: egapx:rnaseq_short_plane:star:run_star (2); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/cd/a10674569e47fbd25ba04e8117a5fd]
May-11 05:23:33.212 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 396; name: egapx:target_proteins_plane:best_aligned_prot:run_best_aligned_prot; status: RUNNING; exit: -; error: -; workDir: Ath_work2/68/97984de0f3b0b53d04d1238efc705a]
May-11 05:27:53.120 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 396; name: egapx:target_proteins_plane:best_aligned_prot:run_best_aligned_prot; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/68/97984de0f3b0b53d04d1238efc705a]
May-11 05:27:54.532 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 05:27:54.532 [Task submitter] INFO  nextflow.Session - [a8/e93aaf] Submitted process > egapx:target_proteins_plane:align_filter_sa:run_align_filter_sa
May-11 05:28:25.815 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 397; name: egapx:target_proteins_plane:align_filter_sa:run_align_filter_sa; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a8/e93aaf5e4fb8759a85bcddc7b6b687]
May-11 05:28:26.962 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 05:28:26.962 [Task submitter] INFO  nextflow.Session - [5b/f16536] Submitted process > egapx:target_proteins_plane:align_sort_sa:run_align_sort
May-11 05:28:33.225 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
~> TaskHandler[id: 398; name: egapx:target_proteins_plane:align_sort_sa:run_align_sort; status: RUNNING; exit: -; error: -; workDir: Ath_work2/5b/f165363939ca89d8b6a60444c44393]
May-11 05:29:32.311 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 398; name: egapx:target_proteins_plane:align_sort_sa:run_align_sort; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5b/f165363939ca89d8b6a60444c44393]
May-11 05:33:33.322 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
May-11 05:38:33.361 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
May-11 05:43:33.437 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
May-11 05:48:33.480 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
May-11 05:53:33.532 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
May-11 05:58:33.598 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
May-11 06:03:33.669 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
May-11 06:08:33.702 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
~> TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
May-11 06:10:56.788 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 339; name: egapx:rnaseq_short_plane:star:run_star (1); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fd/2e93191bb38e789aab6eca50b7b831]
May-11 06:13:33.794 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 06:18:33.847 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 06:23:33.898 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 06:28:33.941 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 06:33:34.003 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 06:38:34.074 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 06:43:34.137 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 06:48:34.195 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 06:53:34.264 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 06:58:34.333 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 07:03:34.399 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 07:08:34.458 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 07:13:34.511 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 07:18:34.552 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 07:23:34.625 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 07:28:34.684 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 07:33:34.726 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 07:38:34.777 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 07:43:34.835 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 07:48:34.905 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 07:53:34.940 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 07:58:34.978 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 08:03:35.043 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 08:08:35.107 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 08:13:35.167 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 08:18:35.231 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 08:23:35.307 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 08:28:35.347 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 08:33:35.350 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 08:38:35.414 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 08:43:35.471 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 08:48:35.526 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 08:53:35.583 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 08:58:35.623 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 09:03:35.675 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 09:08:35.723 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 09:13:35.781 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 09:18:35.824 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 09:23:35.893 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 09:28:35.945 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 09:33:35.970 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 09:38:35.995 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 09:43:36.043 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 09:48:36.105 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 09:53:36.156 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 09:58:36.188 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 10:03:36.208 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 10:08:36.214 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 10:13:36.289 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 10:18:36.368 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 10:22:34.540 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 345; name: egapx:rnaseq_short_plane:star:run_star (7); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fc/57d90dd678a0834a9ee2c8fc71677b]
May-11 10:23:36.469 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > No more task to compute -- The following nodes are still active:
[process] egapx:rnaseq_short_plane:bam_strandedness:rnaseq_divide_by_strandedness
  status=ACTIVE
  port 0: (value) bound ; channel: bam_list
  port 1: (value) bound ; channel: metadata_file
  port 2: (value) bound ; channel: parameters
  port 3: (cntrl) -     ; channel: $

[process] egapx:rnaseq_short_plane:bam_bin_and_sort:calc_assembly_sizes
  status=ACTIVE
  port 0: (value) bound ; channel: bam_files
  port 1: (cntrl) -     ; channel: $

[process] egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: sorted_bam
  port 1: (queue) OPEN  ; channel: sorted_bam_index
  port 2: (value) bound ; channel: genome
  port 3: (value) bound ; channel: organelle
  port 4: (value) OPEN  ; channel: assembly_sizes
  port 5: (value) bound ; channel: bam_bin_params
  port 6: (cntrl) -     ; channel: $

[process] egapx:rnaseq_short_plane:bam_bin_and_sort:merge_prepare
  status=ACTIVE
  port 0: (value) OPEN  ; channel: runs
  port 1: (cntrl) -     ; channel: $

[process] egapx:rnaseq_short_plane:bam_bin_and_sort:merge
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: merge_args
  port 1: (value) OPEN  ; channel: bins
  port 2: (cntrl) -     ; channel: $

[process] egapx:rnaseq_short_plane:bam2asn:convert
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: in_bam
  port 1: (value) OPEN  ; channel: strandedness
  port 2: (value) bound ; channel: genome
  port 3: (value) bound ; channel: sra_metadata
  port 4: (value) bound ; channel: conv_param
  port 5: (cntrl) -     ; channel: $

[process] egapx:rnaseq_short_plane:rnaseq_collapse:generate_jobs
  status=ACTIVE
  port 0: (value) bound ; channel: genome
  port 1: (value) OPEN  ; channel: scaffold_list
  port 2: (value) bound ; channel: njobs
  port 3: (value) bound ; channel: params
  port 4: (cntrl) -     ; channel: $

[process] egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse
  status=ACTIVE
  port 0: (value) bound ; channel: genome
  port 1: (value) OPEN  ; channel: scaffold_list
  port 2: (value) OPEN  ; channel: in_align
  port 3: (value) bound ; channel: sra_metadata_list
  port 4: (queue) OPEN  ; channel: job
  port 5: (value) OPEN  ; channel: lines_per_file
  port 6: (value) bound ; channel: params
  port 7: (cntrl) -     ; channel: $

[process] egapx:rnaseq_short_plane:rnaseq_collapse:run_gpx_make_outputs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_align_sort:run_align_sort
  status=ACTIVE
  port 0: (value) bound ; channel: genome
  port 1: (value) bound ; channel: proteins
  port 2: (queue) OPEN  ; channel: alignments
  port 3: (value) bound ; channel: parameters
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:generate_jobs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: sort_aligns
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:run_chainer
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: job
  port 1: (value) OPEN  ; channel: alignments
  port 2: (value) bound ; channel: hmm_params
  port 3: (value) bound ; channel: evidence_denylist
  port 4: (value) bound ; channel: gap_fill_allowlist
  port 5: (value) bound ; channel: scaffolds
  port 6: (value) bound ; channel: trusted_genes
  port 7: (value) bound ; channel: genome
  port 8: (value) bound ; channel: proteins_asn
  port 9: (value) OPEN  ; channel: lines_per_file
  port 10: (value) bound ; channel: params
  port 11: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:run_gpx_make_outputs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_wnode:gpx_qsubmit
  status=ACTIVE
  port 0: (value) bound ; channel: scaffolds
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) OPEN  ; channel: chains_slices
  port 3: (value) bound ; channel: params
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_wnode:annot
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: jobs
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) bound ; channel: hmm_params
  port 3: (value) bound ; channel: softmask_lds2
  port 4: (value) bound ; channel: softmask
  port 5: (value) bound ; channel: genome
  port 6: (value) bound ; channel: proteins_asn
  port 7: (value) OPEN  ; channel: lines_per_file
  port 8: (value) bound ; channel: params
  port 9: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_wnode:gpx_qdump
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_training:run_gnomon_training
  status=ACTIVE
  port 0: (value) bound ; channel: genome_asn
  port 1: (value) OPEN  ; channel: models_file
  port 2: (value) bound ; channel: max_intron1
  port 3: (value) bound ; channel: parameters
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:generate_jobs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: sort_aligns
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:run_chainer
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: job
  port 1: (value) OPEN  ; channel: alignments
  port 2: (value) OPEN  ; channel: hmm_params
  port 3: (value) bound ; channel: evidence_denylist
  port 4: (value) bound ; channel: gap_fill_allowlist
  port 5: (value) bound ; channel: scaffolds
  port 6: (value) bound ; channel: trusted_genes
  port 7: (value) bound ; channel: genome
  port 8: (value) bound ; channel: proteins_asn
  port 9: (value) OPEN  ; channel: lines_per_file
  port 10: (value) bound ; channel: params
  port 11: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:run_gpx_make_outputs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_wnode:gpx_qsubmit
  status=ACTIVE
  port 0: (value) bound ; channel: scaffolds
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) OPEN  ; channel: chains_slices
  port 3: (value) bound ; channel: params
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_wnode:annot
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: jobs
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) OPEN  ; channel: hmm_params
  port 3: (value) bound ; channel: softmask_lds2
  port 4: (value) bound ; channel: softmask
  port 5: (value) bound ; channel: genome
  port 6: (value) bound ; channel: proteins_asn
  port 7: (value) OPEN  ; channel: lines_per_file
  port 8: (value) bound ; channel: params
  port 9: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_wnode:gpx_qdump
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_training:run_gnomon_training
  status=ACTIVE
  port 0: (value) bound ; channel: genome_asn
  port 1: (value) OPEN  ; channel: models_file
  port 2: (value) bound ; channel: max_intron1
  port 3: (value) bound ; channel: parameters
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:generate_jobs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: sort_aligns
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:run_chainer
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: job
  port 1: (value) OPEN  ; channel: alignments
  port 2: (value) OPEN  ; channel: hmm_params
  port 3: (value) bound ; channel: evidence_denylist
  port 4: (value) bound ; channel: gap_fill_allowlist
  port 5: (value) bound ; channel: scaffolds
  port 6: (value) bound ; channel: trusted_genes
  port 7: (value) bound ; channel: genome
  port 8: (value) bound ; channel: proteins_asn
  port 9: (value) OPEN  ; channel: lines_per_file
  port 10: (value) bound ; channel: params
  port 11: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:run_gpx_make_outputs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_wnode:gpx_qsubmit
  status=ACTIVE
  port 0: (value) bound ; channel: scaffolds
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) OPEN  ; channel: chains_slices
  port 3: (value) bound ; channel: params
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_wnode:annot
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: jobs
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) OPEN  ; channel: hmm_params
  port 3: (value) bound ; channel: softmask_lds2
  port 4: (value) bound ; channel: softmask
  port 5: (value) bound ; channel: genome
  port 6: (value) bound ; channel: proteins_asn
  port 7: (value) OPEN  ; channel: lines_per_file
  port 8: (value) bound ; channel: params
  port 9: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_wnode:gpx_qdump
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_training:run_gnomon_training
  status=ACTIVE
  port 0: (value) bound ; channel: genome_asn
  port 1: (value) OPEN  ; channel: models_file
  port 2: (value) bound ; channel: max_intron1
  port 3: (value) bound ; channel: parameters
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:generate_jobs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: sort_aligns
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:run_chainer
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: job
  port 1: (value) OPEN  ; channel: alignments
  port 2: (value) OPEN  ; channel: hmm_params
  port 3: (value) bound ; channel: evidence_denylist
  port 4: (value) bound ; channel: gap_fill_allowlist
  port 5: (value) bound ; channel: scaffolds
  port 6: (value) bound ; channel: trusted_genes
  port 7: (value) bound ; channel: genome
  port 8: (value) bound ; channel: proteins_asn
  port 9: (value) OPEN  ; channel: lines_per_file
  port 10: (value) bound ; channel: params
  port 11: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:run_gpx_make_outputs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_wnode:gpx_qsubmit
  status=ACTIVE
  port 0: (value) bound ; channel: scaffolds
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) OPEN  ; channel: chains_slices
  port 3: (value) bound ; channel: params
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_wnode:annot
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: jobs
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) OPEN  ; channel: hmm_params
  port 3: (value) bound ; channel: softmask_lds2
  port 4: (value) bound ; channel: softmask
  port 5: (value) bound ; channel: genome
  port 6: (value) bound ; channel: proteins_asn
  port 7: (value) OPEN  ; channel: lines_per_file
  port 8: (value) bound ; channel: params
  port 9: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_wnode:gpx_qdump
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_training:run_gnomon_training
  status=ACTIVE
  port 0: (value) bound ; channel: genome_asn
  port 1: (value) OPEN  ; channel: models_file
  port 2: (value) bound ; channel: max_intron1
  port 3: (value) bound ; channel: parameters
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:chainer:generate_jobs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: sort_aligns
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:chainer:run_chainer
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: job
  port 1: (value) OPEN  ; channel: alignments
  port 2: (value) OPEN  ; channel: hmm_params
  port 3: (value) bound ; channel: evidence_denylist
  port 4: (value) bound ; channel: gap_fill_allowlist
  port 5: (value) bound ; channel: scaffolds
  port 6: (value) bound ; channel: trusted_genes
  port 7: (value) bound ; channel: genome
  port 8: (value) bound ; channel: proteins_asn
  port 9: (value) OPEN  ; channel: lines_per_file
  port 10: (value) bound ; channel: params
  port 11: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:chainer:run_gpx_make_outputs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_wnode:gpx_qsubmit
  status=ACTIVE
  port 0: (value) bound ; channel: scaffolds
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) OPEN  ; channel: chains_slices
  port 3: (value) bound ; channel: params
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_wnode:annot
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: jobs
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) OPEN  ; channel: hmm_params
  port 3: (value) bound ; channel: softmask_lds2
  port 4: (value) bound ; channel: softmask
  port 5: (value) bound ; channel: genome
  port 6: (value) bound ; channel: proteins_asn
  port 7: (value) OPEN  ; channel: lines_per_file
  port 8: (value) bound ; channel: params
  port 9: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_wnode:gpx_qdump
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_evidence_summary:generate_scaffolds
  status=ACTIVE
  port 0: (value) OPEN  ; channel: evidence
  port 1: (value) OPEN  ; channel: evidence_slices
  port 2: (value) OPEN  ; channel: gn_models
  port 3: (value) OPEN  ; channel: gn_models_slices
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_evidence_summary:gpx_qsubmit
  status=ACTIVE
  port 0: (value) OPEN  ; channel: scaffolds
  port 1: (value) bound ; channel: genome_asn
  port 2: (value) bound ; channel: protein_asn
  port 3: (value) OPEN  ; channel: gn_models
  port 4: (value) bound ; channel: params
  port 5: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_evidence_summary:gnomon_report
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: jobs
  port 1: (value) OPEN  ; channel: evidence
  port 2: (value) OPEN  ; channel: evidence_slices
  port 3: (value) OPEN  ; channel: gn_models
  port 4: (value) OPEN  ; channel: gn_models_slices
  port 5: (value) OPEN  ; channel: sra_exons
  port 6: (value) OPEN  ; channel: sra_exons_slices
  port 7: (value) bound ; channel: genome_asn
  port 8: (value) bound ; channel: protein_asn
  port 9: (value) OPEN  ; channel: lines_per_file
  port 10: (value) bound ; channel: taxid
  port 11: (value) bound ; channel: params
  port 12: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_evidence_summary:gpx_qdump
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_evidence_summary:create_reports
  status=ACTIVE
  port 0: (value) OPEN  ; channel: reports
  port 1: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_evidence_summary:gnomon_summary
  status=ACTIVE
  port 0: (value) OPEN  ; channel: gnomon_report
  port 1: (value) OPEN  ; channel: gnomon_quality_report
  port 2: (value) OPEN  ; channel: gn_models
  port 3: (value) bound ; channel: genome_asn
  port 4: (value) bound ; channel: protein_asn
  port 5: (value) bound ; channel: params
  port 6: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:prot_gnomon_prepare:prot_gnomon_prepare_p
  status=ACTIVE
  port 0: (value) OPEN  ; channel: models
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:diamond_worker:run_diamond_egap
  status=ACTIVE
  port 0: (value) OPEN  ; channel: gnomon_prot_ids
  port 1: (value) bound ; channel: swiss_prot_ids
  port 2: (value) OPEN  ; channel: gnomon_prot_asn
  port 3: (value) bound ; channel: swiss_prot_asn
  port 4: (value) bound ; channel: params
  port 5: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:best_protein_hits:run_protein_filter_replacement
  status=ACTIVE
  port 0: (value) OPEN  ; channel: gnomon_prot_asn
  port 1: (value) bound ; channel: swiss_prot_asn
  port 2: (value) OPEN  ; channel: input_prot_alignments
  port 3: (value) bound ; channel: align_filter_params
  port 4: (value) bound ; channel: align_sort_params
  port 5: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_add_filtering_scores:gnomon_filter_models
  status=ACTIVE
  port 0: (value) OPEN  ; channel: naming_db_secondary_support
  port 1: (value) bound ; channel: search_set_secondary_support
  port 2: (value) bound ; channel: gnomon_filtering_scores_file
  port 3: (value) OPEN  ; channel: gnomon_quality_report
  port 4: (value) OPEN  ; channel: best_naming_hits
  port 5: (value) OPEN  ; channel: models
  port 6: (value) bound ; channel: swiss_prot_asn
  port 7: (value) bound ; channel: params
  port 8: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:gnomon_biotype:run_gnomon_biotype
  status=ACTIVE
  port 0: (value) OPEN  ; channel: models_files
  port 1: (value) bound ; channel: splices_files
  port 2: (value) bound ; channel: denylist
  port 3: (value) bound ; channel: gencoll_asn
  port 4: (value) bound ; channel: swiss_prot_asn
  port 5: (value) bound ; channel: lds2_source
  port 6: (value) OPEN  ; channel: raw_blastp_hits
  port 7: (value) bound ; channel: name_cleanup_rules_file
  port 8: (value) bound ; channel: lineage_taxids
  port 9: (value) bound ; channel: parameters
  port 10: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:annot_builder:annot_builder_run
  status=ACTIVE
  port 0: (value) bound ; channel: gencoll_asn
  port 1: (value) bound ; channel: genome_asn
  port 2: (value) OPEN  ; channel: gnomon_annots
  port 3: (value) bound ; channel: cmsearch_annots
  port 4: (value) bound ; channel: trna_annots
  port 5: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:orthology_plane:extract_products_from_models:run_extract_products_from_models
  status=ACTIVE
  port 0: (value) OPEN  ; channel: models
  port 1: (value) bound ; channel: parameters
  port 2: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:orthology_plane:diamond_orthology:run_diamond_egap
  status=ACTIVE
  port 0: (value) OPEN  ; channel: gnomon_prot_ids
  port 1: (value) bound ; channel: swiss_prot_ids
  port 2: (value) OPEN  ; channel: gnomon_prot_asn
  port 3: (value) bound ; channel: swiss_prot_asn
  port 4: (value) bound ; channel: params
  port 5: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:orthology_plane:find_orthologs:run_find_orthologs
  status=ACTIVE
  port 0: (value) bound ; channel: input_gencoll_asn
  port 1: (value) bound ; channel: ref_gencoll_asn
  port 2: (value) OPEN  ; channel: input_annotations
  port 3: (value) bound ; channel: ref_annotations
  port 4: (value) OPEN  ; channel: prot_hits
  port 5: (value) bound ; channel: blastdb
  port 6: (value) OPEN  ; channel: input_proteins_asn
  port 7: (value) bound ; channel: ref_proteins_asn
  port 8: (value) bound ; channel: input_genome_asn
  port 9: (value) bound ; channel: ref_genome_asn
  port 10: (value) bound ; channel: parameters
  port 11: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:locus_track:run_locus_track
  status=ACTIVE
  port 0: (value) OPEN  ; channel: annotation
  port 1: (value) bound ; channel: gencoll_asn
  port 2: (value) bound ; channel: lxr_data
  port 3: (value) bound ; channel: parameters
  port 4: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:locus_link:run_locus_link
  status=ACTIVE
  port 0: (value) bound ; channel: best_refseq_prot_hit
  port 1: (value) OPEN  ; channel: orthologs
  port 2: (value) OPEN  ; channel: annotation
  port 3: (value) bound ; channel: gencoll_asn
  port 4: (value) OPEN  ; channel: gnomon_lds2_source
  port 5: (value) OPEN  ; channel: best_prot_hit
  port 6: (value) OPEN  ; channel: track_loci
  port 7: (value) bound ; channel: comparisons
  port 8: (value) bound ; channel: curr_prev_compare
  port 9: (value) OPEN  ; channel: gnomon_biotypes
  port 10: (value) bound ; channel: lxr_data
  port 11: (value) bound ; channel: lineage_taxids
  port 12: (value) bound ; channel: name_cleanup_rules_file
  port 13: (value) bound ; channel: proteins_asn
  port 14: (value) bound ; channel: name_from_ortholog
  port 15: (value) bound ; channel: parameters
  port 16: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:final_asn_markup:final_asn
  status=ACTIVE
  port 0: (value) bound ; channel: assembly_name
  port 1: (value) bound ; channel: gencoll_asn
  port 2: (value) bound ; channel: genome_asn
  port 3: (value) bound ; channel: scaffolds
  port 4: (value) bound ; channel: chromosomes
  port 5: (value) OPEN  ; channel: annots
  port 6: (value) OPEN  ; channel: locus_link
  port 7: (value) OPEN  ; channel: locustypes
  port 8: (value) bound ; channel: params
  port 9: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:generate_fasta_from_annots:gnomon_asn2fasta
  status=ACTIVE
  port 0: (value) bound ; channel: gencoll_asn
  port 1: (value) OPEN  ; channel: scaffolds
  port 2: (value) bound ; channel: chromosomes
  port 3: (value) bound ; channel: params
  port 4: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:annotwriter:run_annotwriter
  status=ACTIVE
  port 0: (value) OPEN  ; channel: accept_asn_file
  port 1: (cntrl) -     ; channel: $

[process] egapx:convert_annotations:run_converter
  status=ACTIVE
  port 0: (value) OPEN  ; channel: asn_files
  port 1: (value) bound ; channel: gff_params
  port 2: (value) bound ; channel: gtf_params
  port 3: (cntrl) -     ; channel: $

[process] egapx:convert_summary_files:run_convert_summary_files
  status=ACTIVE
  port 0: (value) OPEN  ; channel: report
  port 1: (value) OPEN  ; channel: quality_report
  port 2: (value) OPEN  ; channel: locustypes
  port 3: (value) bound ; channel: locus_tag_prefix
  port 4: (cntrl) -     ; channel: $

[process] egapx:busco:run_busco
  status=ACTIVE
  port 0: (value) OPEN  ; channel: proteins
  port 1: (value) bound ; channel: lineage
  port 2: (value) bound ; channel: lineage_download
  port 3: (value) bound ; channel: parameters
  port 4: (cntrl) -     ; channel: $

[process] export
  status=ACTIVE
  port 0: (value) OPEN  ; channel: genomic_gff
  port 1: (value) OPEN  ; channel: genomic_gtf
  port 2: (value) OPEN  ; channel: genomic_fasta
  port 3: (value) OPEN  ; channel: transcript_fasta
  port 4: (value) OPEN  ; channel: cds_fasta
  port 5: (value) OPEN  ; channel: proteins_fasta
  port 6: (value) OPEN  ; channel: validated
  port 7: (value) OPEN  ; channel: stats
  port 8: (value) OPEN  ; channel: annotated_genome_asn
  port 9: (value) OPEN  ; channel: annotation_data_comment
  port 10: (value) bound ; channel: star_bam
  port 11: (value) OPEN  ; channel: busco_results
  port 12: (value) OPEN  ; channel: gnomon_biotype_contam_rpt
  port 13: (value) OPEN  ; channel: user_gnomon_report
  port 14: (value) OPEN  ; channel: user_gnomon_quality_report
  port 15: (value) OPEN  ; channel: gnomon_summaries
  port 16: (value) bound ; channel: mask_stats
  port 17: (cntrl) -     ; channel: $

May-11 10:28:19.320 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:28:19.323 [Task submitter] INFO  nextflow.Session - [c7/52fe2f] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:calc_assembly_sizes
May-11 10:28:19.334 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:28:19.334 [Task submitter] INFO  nextflow.Session - [44/ec15eb] Submitted process > egapx:rnaseq_short_plane:bam_strandedness:rnaseq_divide_by_strandedness
May-11 10:28:29.956 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 400; name: egapx:rnaseq_short_plane:bam_strandedness:rnaseq_divide_by_strandedness; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/44/ec15eba7149c8993568bf9d1475db9]
May-11 10:28:29.958 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `egapx:rnaseq_short_plane:bam_strandedness:rnaseq_divide_by_strandedness` is unable to find [UnixPath]: `Ath_work2/44/ec15eba7149c8993568bf9d1475db9/output/stranded.list` (pattern: `output/stranded.list`)
May-11 10:28:29.958 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `egapx:rnaseq_short_plane:bam_strandedness:rnaseq_divide_by_strandedness` is unable to find [UnixPath]: `Ath_work2/44/ec15eba7149c8993568bf9d1475db9/output/unstranded.list` (pattern: `output/unstranded.list`)
May-11 10:28:30.020 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process egapx:rnaseq_short_plane:bam_strandedness:rnaseq_divide_by_strandedness > Skipping output binding because one or more optional files are missing: fileoutparam<1>
May-11 10:28:30.020 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process egapx:rnaseq_short_plane:bam_strandedness:rnaseq_divide_by_strandedness > Skipping output binding because one or more optional files are missing: fileoutparam<2>
May-11 10:28:30.023 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 399; name: egapx:rnaseq_short_plane:bam_bin_and_sort:calc_assembly_sizes; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c7/52fe2f1370ea956cd7140158183355]
May-11 10:28:30.943 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:28:30.943 [Task submitter] INFO  nextflow.Session - [d0/e113fe] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (9)
May-11 10:28:30.945 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:28:30.945 [Task submitter] INFO  nextflow.Session - [91/af5559] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (28)
May-11 10:28:30.947 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:28:30.948 [Task submitter] INFO  nextflow.Session - [af/b1c612] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (15)
May-11 10:28:30.951 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:28:30.951 [Task submitter] INFO  nextflow.Session - [2d/18edc6] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (13)
May-11 10:28:30.954 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:28:30.954 [Task submitter] INFO  nextflow.Session - [69/f8ce05] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (26)
May-11 10:28:30.957 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:28:30.957 [Task submitter] INFO  nextflow.Session - [a2/aa9845] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (12)
May-11 10:28:30.958 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below
~> TaskHandler[id: 429; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (29); status: NEW; exit: -; error: -; workDir: Ath_work2/3d/93ed1150d51ae583e008f4ca17dd32]
~> TaskHandler[id: 417; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (17); status: NEW; exit: -; error: -; workDir: Ath_work2/ff/337624343c7a99a48fec82449d401b]
~> TaskHandler[id: 425; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (25); status: NEW; exit: -; error: -; workDir: Ath_work2/85/3d94b7f957e809346310d521d45a5d]
~> TaskHandler[id: 421; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (21); status: NEW; exit: -; error: -; workDir: Ath_work2/1b/a27b67f30c84c3f85d01a0a3578b63]
May-11 10:28:36.537 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 409; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (9); status: RUNNING; exit: -; error: -; workDir: Ath_work2/d0/e113feee33574b46ff8093620bcc2f]
~> TaskHandler[id: 428; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (28); status: RUNNING; exit: -; error: -; workDir: Ath_work2/91/af55597e793f1ea730b0c26e447a4f]
~> TaskHandler[id: 415; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (15); status: RUNNING; exit: -; error: -; workDir: Ath_work2/af/b1c612d95aa7578358ea137bc54f5d]
~> TaskHandler[id: 413; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (13); status: RUNNING; exit: -; error: -; workDir: Ath_work2/2d/18edc63e9d428da8949b4b3ae3ae0d]
~> TaskHandler[id: 426; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (26); status: RUNNING; exit: -; error: -; workDir: Ath_work2/69/f8ce0542cec84d98c59ad8f579c287]
~> TaskHandler[id: 412; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (12); status: RUNNING; exit: -; error: -; workDir: Ath_work2/a2/aa984592619aba84160303312122ee]
May-11 10:29:57.108 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 412; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (12); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a2/aa984592619aba84160303312122ee]
May-11 10:29:57.111 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:29:57.111 [Task submitter] INFO  nextflow.Session - [3d/93ed11] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (29)
May-11 10:30:12.611 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 426; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (26); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/69/f8ce0542cec84d98c59ad8f579c287]
May-11 10:30:12.613 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:30:12.613 [Task submitter] INFO  nextflow.Session - [ff/337624] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (17)
May-11 10:30:31.978 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 428; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (28); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/91/af55597e793f1ea730b0c26e447a4f]
May-11 10:30:31.980 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:30:31.980 [Task submitter] INFO  nextflow.Session - [85/3d94b7] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (25)
May-11 10:31:01.933 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 413; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (13); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2d/18edc63e9d428da8949b4b3ae3ae0d]
May-11 10:31:01.934 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:31:01.934 [Task submitter] INFO  nextflow.Session - [1b/a27b67] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (21)
May-11 10:31:28.372 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 417; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (17); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ff/337624343c7a99a48fec82449d401b]
May-11 10:31:28.374 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:31:28.374 [Task submitter] INFO  nextflow.Session - [1d/2b8216] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (14)
May-11 10:31:48.573 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 421; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (21); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1b/a27b67f30c84c3f85d01a0a3578b63]
May-11 10:31:48.575 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:31:48.575 [Task submitter] INFO  nextflow.Session - [bc/4bc79e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (22)
May-11 10:31:49.798 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 429; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (29); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3d/93ed1150d51ae583e008f4ca17dd32]
May-11 10:31:49.800 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:31:49.800 [Task submitter] INFO  nextflow.Session - [0a/fc5e5f] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (11)
May-11 10:32:08.032 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 409; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (9); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d0/e113feee33574b46ff8093620bcc2f]
May-11 10:32:08.034 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:32:08.035 [Task submitter] INFO  nextflow.Session - [29/f1ef0e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (24)
May-11 10:32:42.942 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 415; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (15); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/af/b1c612d95aa7578358ea137bc54f5d]
May-11 10:32:42.944 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:32:42.944 [Task submitter] INFO  nextflow.Session - [38/c44910] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (8)
May-11 10:32:45.305 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 425; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (25); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/85/3d94b7f957e809346310d521d45a5d]
May-11 10:32:45.306 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:32:45.306 [Task submitter] INFO  nextflow.Session - [5f/0f7ff7] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (23)
May-11 10:33:31.316 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 16 -- tasks to be submitted are shown below
~> TaskHandler[id: 431; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (31); status: NEW; exit: -; error: -; workDir: Ath_work2/9c/1e56841f43ea88a8eb65b94c70cb9c]
~> TaskHandler[id: 418; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (18); status: NEW; exit: -; error: -; workDir: Ath_work2/cc/d7a9fb0961164992156511add50ce4]
~> TaskHandler[id: 416; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (16); status: NEW; exit: -; error: -; workDir: Ath_work2/c0/d05d6370bdd461d83f9fa0ff93162e]
~> TaskHandler[id: 410; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (10); status: NEW; exit: -; error: -; workDir: Ath_work2/2c/ba60df73acc14224cb3a9bfaa3759a]
~> TaskHandler[id: 420; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (20); status: NEW; exit: -; error: -; workDir: Ath_work2/3d/8b8ec6d45f641d881498aef43df1a3]
~> TaskHandler[id: 406; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (6); status: NEW; exit: -; error: -; workDir: Ath_work2/34/45f73c54f72fab43f3dc7212302118]
~> TaskHandler[id: 405; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (5); status: NEW; exit: -; error: -; workDir: Ath_work2/b6/a9ad6a354fda518688354e28a81746]
~> TaskHandler[id: 430; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (30); status: NEW; exit: -; error: -; workDir: Ath_work2/f4/253c59995a69b252f17f8776808828]
~> TaskHandler[id: 402; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (2); status: NEW; exit: -; error: -; workDir: Ath_work2/e8/cdff26294b520ee7810a83f53a8c73]
~> TaskHandler[id: 427; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (27); status: NEW; exit: -; error: -; workDir: Ath_work2/5a/c69e80573e53a195e08e3480f8d378]
.. remaining tasks omitted.
May-11 10:33:36.582 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 414; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (14); status: RUNNING; exit: -; error: -; workDir: Ath_work2/1d/2b8216c2c24c25e121d516b96e6cb3]
~> TaskHandler[id: 422; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (22); status: RUNNING; exit: -; error: -; workDir: Ath_work2/bc/4bc79e0060d93bfea7380fa9a02234]
~> TaskHandler[id: 411; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (11); status: RUNNING; exit: -; error: -; workDir: Ath_work2/0a/fc5e5f155b8ad2104cb9636fce96c5]
~> TaskHandler[id: 424; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (24); status: RUNNING; exit: -; error: -; workDir: Ath_work2/29/f1ef0efdc8781e878cf4cba6eb1f98]
~> TaskHandler[id: 408; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (8); status: RUNNING; exit: -; error: -; workDir: Ath_work2/38/c44910260d617bc7438a6bf9695cce]
~> TaskHandler[id: 423; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (23); status: RUNNING; exit: -; error: -; workDir: Ath_work2/5f/0f7ff758f7a41583e44d2a9f4f14a6]
May-11 10:34:24.642 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 411; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (11); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0a/fc5e5f155b8ad2104cb9636fce96c5]
May-11 10:34:24.644 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:34:24.644 [Task submitter] INFO  nextflow.Session - [9c/1e5684] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (31)
May-11 10:35:30.034 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 422; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (22); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bc/4bc79e0060d93bfea7380fa9a02234]
May-11 10:35:30.036 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:35:30.036 [Task submitter] INFO  nextflow.Session - [cc/d7a9fb] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (18)
May-11 10:35:36.005 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 424; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (24); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/29/f1ef0efdc8781e878cf4cba6eb1f98]
May-11 10:35:36.007 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:35:36.007 [Task submitter] INFO  nextflow.Session - [c0/d05d63] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (16)
May-11 10:35:38.129 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 414; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (14); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1d/2b8216c2c24c25e121d516b96e6cb3]
May-11 10:35:38.131 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:35:38.131 [Task submitter] INFO  nextflow.Session - [2c/ba60df] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (10)
May-11 10:36:13.840 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 408; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (8); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/38/c44910260d617bc7438a6bf9695cce]
May-11 10:36:13.842 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:36:13.842 [Task submitter] INFO  nextflow.Session - [3d/8b8ec6] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (20)
May-11 10:36:23.431 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 423; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (23); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5f/0f7ff758f7a41583e44d2a9f4f14a6]
May-11 10:36:23.433 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:36:23.433 [Task submitter] INFO  nextflow.Session - [34/45f73c] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (6)
May-11 10:37:45.091 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 431; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (31); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9c/1e56841f43ea88a8eb65b94c70cb9c]
May-11 10:37:45.093 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:37:45.093 [Task submitter] INFO  nextflow.Session - [b6/a9ad6a] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (5)
May-11 10:38:32.102 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 9 -- tasks to be submitted are shown below
~> TaskHandler[id: 430; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (30); status: NEW; exit: -; error: -; workDir: Ath_work2/f4/253c59995a69b252f17f8776808828]
~> TaskHandler[id: 402; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (2); status: NEW; exit: -; error: -; workDir: Ath_work2/e8/cdff26294b520ee7810a83f53a8c73]
~> TaskHandler[id: 427; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (27); status: NEW; exit: -; error: -; workDir: Ath_work2/5a/c69e80573e53a195e08e3480f8d378]
~> TaskHandler[id: 403; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (3); status: NEW; exit: -; error: -; workDir: Ath_work2/8e/91c7460baf18376cb9cab562ae1b91]
~> TaskHandler[id: 404; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (4); status: NEW; exit: -; error: -; workDir: Ath_work2/10/38b7fceafab4324ccb75e262d64d17]
~> TaskHandler[id: 419; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (19); status: NEW; exit: -; error: -; workDir: Ath_work2/90/9594894b765b64b0f0ab4001af4593]
~> TaskHandler[id: 432; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (32); status: NEW; exit: -; error: -; workDir: Ath_work2/92/3eaa762d07ee226989944a35114c06]
~> TaskHandler[id: 401; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (1); status: NEW; exit: -; error: -; workDir: Ath_work2/aa/61aa5ee064e1a9111a41bffc234a49]
~> TaskHandler[id: 407; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (7); status: NEW; exit: -; error: -; workDir: Ath_work2/b6/44a4e88b79578cdca7643c2b6e1d5f]
May-11 10:38:36.658 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 418; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (18); status: RUNNING; exit: -; error: -; workDir: Ath_work2/cc/d7a9fb0961164992156511add50ce4]
~> TaskHandler[id: 416; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (16); status: RUNNING; exit: -; error: -; workDir: Ath_work2/c0/d05d6370bdd461d83f9fa0ff93162e]
~> TaskHandler[id: 410; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (10); status: RUNNING; exit: -; error: -; workDir: Ath_work2/2c/ba60df73acc14224cb3a9bfaa3759a]
~> TaskHandler[id: 420; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (20); status: RUNNING; exit: -; error: -; workDir: Ath_work2/3d/8b8ec6d45f641d881498aef43df1a3]
~> TaskHandler[id: 406; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (6); status: RUNNING; exit: -; error: -; workDir: Ath_work2/34/45f73c54f72fab43f3dc7212302118]
~> TaskHandler[id: 405; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (5); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b6/a9ad6a354fda518688354e28a81746]
May-11 10:39:50.017 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 410; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (10); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2c/ba60df73acc14224cb3a9bfaa3759a]
May-11 10:39:50.018 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:39:50.019 [Task submitter] INFO  nextflow.Session - [f4/253c59] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (30)
May-11 10:40:21.103 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 418; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (18); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/cc/d7a9fb0961164992156511add50ce4]
May-11 10:40:21.105 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:40:21.105 [Task submitter] INFO  nextflow.Session - [e8/cdff26] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (2)
May-11 10:40:36.964 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 416; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (16); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c0/d05d6370bdd461d83f9fa0ff93162e]
May-11 10:40:36.966 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:40:36.966 [Task submitter] INFO  nextflow.Session - [5a/c69e80] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (27)
May-11 10:41:36.992 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 420; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (20); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3d/8b8ec6d45f641d881498aef43df1a3]
May-11 10:41:36.994 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:41:36.994 [Task submitter] INFO  nextflow.Session - [8e/91c746] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (3)
May-11 10:41:38.194 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 406; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (6); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/34/45f73c54f72fab43f3dc7212302118]
May-11 10:41:38.195 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:41:38.195 [Task submitter] INFO  nextflow.Session - [10/38b7fc] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (4)
May-11 10:43:16.090 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 405; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (5); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b6/a9ad6a354fda518688354e28a81746]
May-11 10:43:16.092 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:43:16.092 [Task submitter] INFO  nextflow.Session - [90/959489] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (19)
May-11 10:43:33.095 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 3 -- tasks to be submitted are shown below
~> TaskHandler[id: 432; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (32); status: NEW; exit: -; error: -; workDir: Ath_work2/92/3eaa762d07ee226989944a35114c06]
~> TaskHandler[id: 401; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (1); status: NEW; exit: -; error: -; workDir: Ath_work2/aa/61aa5ee064e1a9111a41bffc234a49]
~> TaskHandler[id: 407; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (7); status: NEW; exit: -; error: -; workDir: Ath_work2/b6/44a4e88b79578cdca7643c2b6e1d5f]
May-11 10:43:36.720 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 430; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (30); status: RUNNING; exit: -; error: -; workDir: Ath_work2/f4/253c59995a69b252f17f8776808828]
~> TaskHandler[id: 402; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (2); status: RUNNING; exit: -; error: -; workDir: Ath_work2/e8/cdff26294b520ee7810a83f53a8c73]
~> TaskHandler[id: 427; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (27); status: RUNNING; exit: -; error: -; workDir: Ath_work2/5a/c69e80573e53a195e08e3480f8d378]
~> TaskHandler[id: 403; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (3); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8e/91c7460baf18376cb9cab562ae1b91]
~> TaskHandler[id: 404; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/10/38b7fceafab4324ccb75e262d64d17]
~> TaskHandler[id: 419; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (19); status: RUNNING; exit: -; error: -; workDir: Ath_work2/90/9594894b765b64b0f0ab4001af4593]
May-11 10:44:05.478 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 430; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (30); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f4/253c59995a69b252f17f8776808828]
May-11 10:44:05.480 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:44:05.480 [Task submitter] INFO  nextflow.Session - [92/3eaa76] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (32)
May-11 10:46:23.673 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 427; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (27); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5a/c69e80573e53a195e08e3480f8d378]
May-11 10:46:23.675 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:46:23.675 [Task submitter] INFO  nextflow.Session - [aa/61aa5e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (1)
May-11 10:47:01.240 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 402; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (2); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e8/cdff26294b520ee7810a83f53a8c73]
May-11 10:47:01.241 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 10:47:01.241 [Task submitter] INFO  nextflow.Session - [b6/44a4e8] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (7)
May-11 10:48:04.852 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 403; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (3); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8e/91c7460baf18376cb9cab562ae1b91]
May-11 10:48:36.803 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 5 -- submitted tasks are shown below
~> TaskHandler[id: 404; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (4); status: RUNNING; exit: -; error: -; workDir: Ath_work2/10/38b7fceafab4324ccb75e262d64d17]
~> TaskHandler[id: 419; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (19); status: RUNNING; exit: -; error: -; workDir: Ath_work2/90/9594894b765b64b0f0ab4001af4593]
~> TaskHandler[id: 432; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (32); status: RUNNING; exit: -; error: -; workDir: Ath_work2/92/3eaa762d07ee226989944a35114c06]
~> TaskHandler[id: 401; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/aa/61aa5ee064e1a9111a41bffc234a49]
~> TaskHandler[id: 407; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b6/44a4e88b79578cdca7643c2b6e1d5f]
May-11 10:48:58.631 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 404; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (4); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/10/38b7fceafab4324ccb75e262d64d17]
May-11 10:49:35.602 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 432; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (32); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/92/3eaa762d07ee226989944a35114c06]
May-11 10:51:53.421 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 419; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (19); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/90/9594894b765b64b0f0ab4001af4593]
May-11 10:53:36.868 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 401; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (1); status: RUNNING; exit: -; error: -; workDir: Ath_work2/aa/61aa5ee064e1a9111a41bffc234a49]
~> TaskHandler[id: 407; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b6/44a4e88b79578cdca7643c2b6e1d5f]
May-11 10:55:23.977 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 401; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (1); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/aa/61aa5ee064e1a9111a41bffc234a49]
May-11 10:58:36.930 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 407; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b6/44a4e88b79578cdca7643c2b6e1d5f]
May-11 11:03:36.942 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 407; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b6/44a4e88b79578cdca7643c2b6e1d5f]
May-11 11:08:37.001 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 407; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b6/44a4e88b79578cdca7643c2b6e1d5f]
May-11 11:13:37.060 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 407; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (7); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b6/44a4e88b79578cdca7643c2b6e1d5f]
May-11 11:15:04.439 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 407; name: egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (7); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b6/44a4e88b79578cdca7643c2b6e1d5f]
May-11 11:15:04.452 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:04.452 [Task submitter] INFO  nextflow.Session - [b6/6d2849] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge_prepare
May-11 11:15:15.007 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 433; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge_prepare; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b6/6d2849840e9c733145da9c4593ba7f]
May-11 11:15:15.247 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:15.247 [Task submitter] INFO  nextflow.Session - [48/095a56] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (1)
May-11 11:15:15.333 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:15.333 [Task submitter] INFO  nextflow.Session - [49/a6d98f] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (2)
May-11 11:15:15.360 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:15.360 [Task submitter] INFO  nextflow.Session - [06/d88cbc] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (3)
May-11 11:15:15.386 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:15.386 [Task submitter] INFO  nextflow.Session - [8c/606b5e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (4)
May-11 11:15:15.426 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:15.426 [Task submitter] INFO  nextflow.Session - [af/84dc44] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (5)
May-11 11:15:15.444 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:15.444 [Task submitter] INFO  nextflow.Session - [af/5fe698] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (7)
May-11 11:15:15.452 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 68 -- tasks to be submitted are shown below
~> TaskHandler[id: 439; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (6); status: NEW; exit: -; error: -; workDir: Ath_work2/5b/b5b3871e117626c0d278720bf4afb8]
~> TaskHandler[id: 441; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (8); status: NEW; exit: -; error: -; workDir: Ath_work2/79/6a1f94438acc08a7ed12829bb447c6]
~> TaskHandler[id: 443; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (10); status: NEW; exit: -; error: -; workDir: Ath_work2/80/ba2d8a0cf45346ac1da31d22e0209b]
~> TaskHandler[id: 445; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (12); status: NEW; exit: -; error: -; workDir: Ath_work2/8e/2fdb6bf10841cd3c267677e1d71199]
~> TaskHandler[id: 446; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (13); status: NEW; exit: -; error: -; workDir: Ath_work2/c0/6bd519c4f55c68d0970fc4fee0fab2]
~> TaskHandler[id: 444; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (11); status: NEW; exit: -; error: -; workDir: Ath_work2/31/bfde24f435864859f9c8cc4b88e980]
~> TaskHandler[id: 442; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (9); status: NEW; exit: -; error: -; workDir: Ath_work2/75/4d281d64eb848f5b22961428e72bdb]
~> TaskHandler[id: 447; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (14); status: NEW; exit: -; error: -; workDir: Ath_work2/39/c8d4486c671d9f7b28e7d2bb22b905]
~> TaskHandler[id: 449; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (16); status: NEW; exit: -; error: -; workDir: Ath_work2/44/1279cf7072da5ed900e6f3e638aac5]
~> TaskHandler[id: 450; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (17); status: NEW; exit: -; error: -; workDir: Ath_work2/09/69ebcd677fe1fbe8d1a704b55897b5]
.. remaining tasks omitted.
May-11 11:15:22.768 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 436; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (3); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/06/d88cbcce1883ae1af07213c7c9007e]
May-11 11:15:22.772 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:22.772 [Task submitter] INFO  nextflow.Session - [5b/b5b387] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (6)
May-11 11:15:23.793 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 437; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (4); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8c/606b5e3895c8a8e01a4a0757bec6c1]
May-11 11:15:23.796 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:23.796 [Task submitter] INFO  nextflow.Session - [79/6a1f94] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (8)
May-11 11:15:24.002 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 440; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (7); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/af/5fe69895f29a946d84f22d3455e86d]
May-11 11:15:24.006 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:24.006 [Task submitter] INFO  nextflow.Session - [80/ba2d8a] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (10)
May-11 11:15:25.376 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 435; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (2); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/49/a6d98f324a4d670c926a7e1d0dda21]
May-11 11:15:25.379 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:25.379 [Task submitter] INFO  nextflow.Session - [8e/2fdb6b] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (12)
May-11 11:15:25.646 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 434; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (1); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/48/095a5628fcee7443ec58b44ab8e3de]
May-11 11:15:25.649 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:25.649 [Task submitter] INFO  nextflow.Session - [c0/6bd519] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (13)
May-11 11:15:26.495 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 438; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (5); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/af/84dc44eb59c4fdf75fe31acb7cf5f1]
May-11 11:15:26.498 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:26.498 [Task submitter] INFO  nextflow.Session - [31/bfde24] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (11)
May-11 11:15:29.006 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 441; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (8); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/79/6a1f94438acc08a7ed12829bb447c6]
May-11 11:15:29.009 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:29.009 [Task submitter] INFO  nextflow.Session - [75/4d281d] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (9)
May-11 11:15:29.435 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 439; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (6); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5b/b5b3871e117626c0d278720bf4afb8]
May-11 11:15:29.440 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:29.440 [Task submitter] INFO  nextflow.Session - [39/c8d448] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (14)
May-11 11:15:31.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 445; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (12); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8e/2fdb6bf10841cd3c267677e1d71199]
May-11 11:15:31.111 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:31.111 [Task submitter] INFO  nextflow.Session - [44/1279cf] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (16)
May-11 11:15:31.624 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 444; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (11); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/31/bfde24f435864859f9c8cc4b88e980]
May-11 11:15:31.627 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:31.627 [Task submitter] INFO  nextflow.Session - [09/69ebcd] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (17)
May-11 11:15:32.740 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 446; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (13); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c0/6bd519c4f55c68d0970fc4fee0fab2]
May-11 11:15:32.743 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:32.743 [Task submitter] INFO  nextflow.Session - [b1/3dcd4d] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (15)
May-11 11:15:35.006 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 447; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (14); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/39/c8d4486c671d9f7b28e7d2bb22b905]
May-11 11:15:35.008 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:35.008 [Task submitter] INFO  nextflow.Session - [a9/8afe29] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (20)
May-11 11:15:35.647 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 442; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (9); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/75/4d281d64eb848f5b22961428e72bdb]
May-11 11:15:35.649 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:35.649 [Task submitter] INFO  nextflow.Session - [b4/b2460b] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (24)
May-11 11:15:36.588 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 449; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (16); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/44/1279cf7072da5ed900e6f3e638aac5]
May-11 11:15:36.591 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:36.591 [Task submitter] INFO  nextflow.Session - [d5/892d14] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (23)
May-11 11:15:37.105 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 450; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (17); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/09/69ebcd677fe1fbe8d1a704b55897b5]
May-11 11:15:37.108 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:37.108 [Task submitter] INFO  nextflow.Session - [7b/4688e3] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (22)
May-11 11:15:37.954 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 448; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (15); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b1/3dcd4dd9887ec06072f668b7125f61]
May-11 11:15:37.957 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:37.957 [Task submitter] INFO  nextflow.Session - [96/78fa6f] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (26)
May-11 11:15:40.901 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 453; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (20); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a9/8afe29ea661424fe0f1063ef9661b6]
May-11 11:15:40.904 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:40.904 [Task submitter] INFO  nextflow.Session - [81/b9ca23] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (27)
May-11 11:15:41.843 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 456; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (23); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d5/892d14e16bbcc22aac38638bff13f7]
May-11 11:15:41.846 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:41.846 [Task submitter] INFO  nextflow.Session - [0a/ac1b01] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (25)
May-11 11:15:42.617 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 455; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (22); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7b/4688e3bb92f6a9bcf4bb900fd656ab]
May-11 11:15:42.619 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:42.620 [Task submitter] INFO  nextflow.Session - [4e/ca627a] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (19)
May-11 11:15:43.581 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 457; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (24); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b4/b2460b4426ef1a71e13449713aa693]
May-11 11:15:43.584 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:43.584 [Task submitter] INFO  nextflow.Session - [8a/a29d44] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (29)
May-11 11:15:43.617 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 459; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (26); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/96/78fa6f6298d259ac1845b8a21faa7e]
May-11 11:15:43.620 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:43.620 [Task submitter] INFO  nextflow.Session - [fb/a221f0] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (32)
May-11 11:15:46.618 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 460; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (27); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/81/b9ca2316f87567b430bd28f017ed04]
May-11 11:15:46.621 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:46.621 [Task submitter] INFO  nextflow.Session - [31/c3c81b] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (30)
May-11 11:15:48.120 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 458; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (25); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0a/ac1b012e5cb5a3041bc6b5ee7753fa]
May-11 11:15:48.123 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:48.123 [Task submitter] INFO  nextflow.Session - [8d/f26844] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (28)
May-11 11:15:48.503 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 452; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (19); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4e/ca627aa844d4a4abf11dbf86051da3]
May-11 11:15:48.506 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:48.506 [Task submitter] INFO  nextflow.Session - [ea/145b22] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (21)
May-11 11:15:49.655 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 462; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (29); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8a/a29d44cd3f5ff549ee978821d11f76]
May-11 11:15:49.660 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:49.660 [Task submitter] INFO  nextflow.Session - [57/0f164f] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (31)
May-11 11:15:50.413 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 465; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (32); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fb/a221f0b8e181d79aca87c96d408253]
May-11 11:15:50.416 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:50.416 [Task submitter] INFO  nextflow.Session - [48/be9ee8] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (39)
May-11 11:15:53.750 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 463; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (30); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/31/c3c81b1bbc788c7969b398179fa75b]
May-11 11:15:53.753 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:53.753 [Task submitter] INFO  nextflow.Session - [07/2e1110] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (45)
May-11 11:15:54.393 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 454; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (21); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ea/145b22a7cb3fa291973cb1c87325b3]
May-11 11:15:54.395 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:54.395 [Task submitter] INFO  nextflow.Session - [71/bb19ef] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (43)
May-11 11:15:54.402 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 461; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (28); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8d/f26844904f010ed7a6d75660194b6e]
May-11 11:15:54.404 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:54.404 [Task submitter] INFO  nextflow.Session - [fb/03f663] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (49)
May-11 11:15:56.479 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 464; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (31); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/57/0f164f1f5e091582e371647ec3af83]
May-11 11:15:56.482 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:56.482 [Task submitter] INFO  nextflow.Session - [b5/4c7609] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (50)
May-11 11:15:57.368 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 472; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (39); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/48/be9ee84634eaf4ac9d2b6aee464e4e]
May-11 11:15:57.371 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:15:57.371 [Task submitter] INFO  nextflow.Session - [5c/19c971] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (42)
May-11 11:16:00.498 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 478; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (45); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/07/2e1110b488a624412fbdee8f7afe79]
May-11 11:16:00.503 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:00.503 [Task submitter] INFO  nextflow.Session - [c4/c8928e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (52)
May-11 11:16:01.478 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 476; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (43); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/71/bb19ef129b50efda2a4cfdbc7e7c2f]
May-11 11:16:01.482 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:01.483 [Task submitter] INFO  nextflow.Session - [82/bc80e7] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (33)
May-11 11:16:01.817 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 443; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (10); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/80/ba2d8a0cf45346ac1da31d22e0209b]
May-11 11:16:01.819 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:01.819 [Task submitter] INFO  nextflow.Session - [7c/e821aa] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (51)
May-11 11:16:02.316 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 482; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (49); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fb/03f66301509c4d1e4f466cdf890e7f]
May-11 11:16:02.318 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:02.318 [Task submitter] INFO  nextflow.Session - [81/87356b] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (54)
May-11 11:16:03.542 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 483; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (50); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b5/4c7609787c37b0a68fa26b9ca03b29]
May-11 11:16:03.545 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:03.545 [Task submitter] INFO  nextflow.Session - [bd/813a65] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (35)
May-11 11:16:04.451 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 475; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (42); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5c/19c9712d3712d08d8b741ef74d1f0c]
May-11 11:16:04.454 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:04.454 [Task submitter] INFO  nextflow.Session - [ed/0f9bcd] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (56)
May-11 11:16:07.609 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 485; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (52); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c4/c8928eb5f93d5ad61a79f24ddd812a]
May-11 11:16:07.612 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:07.612 [Task submitter] INFO  nextflow.Session - [01/96d4c6] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (58)
May-11 11:16:08.323 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 466; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (33); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/82/bc80e7ac02f74e67f1b59e5c668fc6]
May-11 11:16:08.326 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:08.326 [Task submitter] INFO  nextflow.Session - [4d/d905f5] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (36)
May-11 11:16:08.733 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 484; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (51); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7c/e821aa5c2929060cb38f50749b5827]
May-11 11:16:08.737 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:08.737 [Task submitter] INFO  nextflow.Session - [08/266685] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (41)
May-11 11:16:09.763 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 487; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (54); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/81/87356bac97295269610cca11867d9c]
May-11 11:16:09.766 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:09.767 [Task submitter] INFO  nextflow.Session - [14/0339e7] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (37)
May-11 11:16:11.811 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 468; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (35); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bd/813a65e7b50ffe1b8fdf498056411f]
May-11 11:16:11.814 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:11.814 [Task submitter] INFO  nextflow.Session - [0f/5bbe8d] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (48)
May-11 11:16:12.078 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 489; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (56); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ed/0f9bcd118f8ee89bf62319b8b32783]
May-11 11:16:12.081 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:12.081 [Task submitter] INFO  nextflow.Session - [2a/0c6f0b] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (46)
May-11 11:16:15.175 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 491; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (58); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/01/96d4c604fce01563b25f32b80493ea]
May-11 11:16:15.179 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:15.179 [Task submitter] INFO  nextflow.Session - [c8/5b9d96] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (38)
May-11 11:16:15.542 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 474; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (41); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/08/2666859c7f8109dd2eabef957b80c6]
May-11 11:16:15.545 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:15.545 [Task submitter] INFO  nextflow.Session - [ba/66462f] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (47)
May-11 11:16:16.528 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 469; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (36); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4d/d905f551bd7c6a586f6a54da1722c4]
May-11 11:16:16.532 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:16.532 [Task submitter] INFO  nextflow.Session - [74/29a2cc] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (44)
May-11 11:16:18.788 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 470; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (37); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/14/0339e7585d664d0a1a9576bcbfc9b6]
May-11 11:16:18.791 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:18.791 [Task submitter] INFO  nextflow.Session - [df/2d65e4] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (55)
May-11 11:16:19.043 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 479; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (46); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2a/0c6f0ba71ea9e6862db8f452886d56]
May-11 11:16:19.045 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:19.045 [Task submitter] INFO  nextflow.Session - [76/7e92d2] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (59)
May-11 11:16:19.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 481; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (48); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0f/5bbe8db8dbb9099e5aba02e737080b]
May-11 11:16:19.111 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:19.111 [Task submitter] INFO  nextflow.Session - [67/e6e59d] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (40)
May-11 11:16:21.959 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 471; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (38); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c8/5b9d96f5508cc3b5937d9f7f79db16]
May-11 11:16:21.964 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:21.964 [Task submitter] INFO  nextflow.Session - [fc/dbe494] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (63)
May-11 11:16:22.424 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 480; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (47); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ba/66462f27c867e15683f0805eb69b7d]
May-11 11:16:22.426 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:22.426 [Task submitter] INFO  nextflow.Session - [28/4f91b7] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (62)
May-11 11:16:23.516 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 477; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (44); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/74/29a2ccac99b65b4c8fe4e54d5549cd]
May-11 11:16:23.519 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:23.519 [Task submitter] INFO  nextflow.Session - [ef/045f1a] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (60)
May-11 11:16:25.794 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 473; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (40); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/67/e6e59d0453f3a767eed256b650e35a]
May-11 11:16:25.797 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:25.797 [Task submitter] INFO  nextflow.Session - [9a/1cd554] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (69)
May-11 11:16:26.364 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 492; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (59); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/76/7e92d2a257cc8c9882dd79b9f1a91d]
May-11 11:16:26.367 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:26.367 [Task submitter] INFO  nextflow.Session - [eb/762255] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (65)
May-11 11:16:26.442 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 488; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (55); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/df/2d65e4e6fe51e4e036688292c58605]
May-11 11:16:26.445 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:26.445 [Task submitter] INFO  nextflow.Session - [3c/b9a07e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (61)
May-11 11:16:29.021 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 496; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (63); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fc/dbe494cdb549d1aec3a54aa8753642]
May-11 11:16:29.024 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:29.024 [Task submitter] INFO  nextflow.Session - [2c/888618] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (74)
May-11 11:16:29.886 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 495; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (62); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/28/4f91b7a0ea3892c21913812c36da7c]
May-11 11:16:29.889 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:29.889 [Task submitter] INFO  nextflow.Session - [86/2533b1] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (68)
May-11 11:16:33.519 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 502; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (69); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9a/1cd554cab1509cee4c95eb44531acd]
May-11 11:16:33.522 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:33.522 [Task submitter] INFO  nextflow.Session - [cd/35afe0] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (66)
May-11 11:16:33.582 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 494; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (61); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3c/b9a07e2b1bf32b2ed62fc4bbdc20fe]
May-11 11:16:33.586 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:33.586 [Task submitter] INFO  nextflow.Session - [43/5de006] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (71)
May-11 11:16:34.240 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 493; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (60); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ef/045f1ac3453faacb440827a33955f0]
May-11 11:16:34.244 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:34.244 [Task submitter] INFO  nextflow.Session - [9e/e41dfd] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (64)
May-11 11:16:34.941 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 498; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (65); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/eb/762255bce73e543fa74b9519c74a07]
May-11 11:16:34.944 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:34.944 [Task submitter] INFO  nextflow.Session - [3a/ff95e2] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (73)
May-11 11:16:35.445 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 507; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (74); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2c/888618cc48699036f24c307ea42588]
May-11 11:16:35.448 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:35.448 [Task submitter] INFO  nextflow.Session - [d5/8d9ff7] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (70)
May-11 11:16:38.698 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 501; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (68); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/86/2533b1c0781bcf12695b1fbbd7b0a4]
May-11 11:16:38.700 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:38.700 [Task submitter] INFO  nextflow.Session - [e9/5dd530] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (76)
May-11 11:16:39.275 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 504; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (71); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/43/5de0068ed75913e55a1676e8a1374c]
May-11 11:16:39.279 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:39.279 [Task submitter] INFO  nextflow.Session - [c5/9005d8] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (72)
May-11 11:16:40.442 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 499; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (66); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/cd/35afe01c39731b1e8ba25eea3f2c67]
May-11 11:16:40.445 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:40.445 [Task submitter] INFO  nextflow.Session - [15/782744] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (87)
May-11 11:16:42.268 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 497; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (64); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9e/e41dfddd56611652e88cbe67a1115b]
May-11 11:16:42.272 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:42.272 [Task submitter] INFO  nextflow.Session - [12/fa3115] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (34)
May-11 11:16:44.067 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 506; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (73); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3a/ff95e23d6e947cd7fb1745f9afcc3e]
May-11 11:16:44.071 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:44.071 [Task submitter] INFO  nextflow.Session - [99/2d45ac] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (18)
May-11 11:16:44.237 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 503; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (70); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d5/8d9ff7fd186d93a703dd186e08df92]
May-11 11:16:44.240 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:44.240 [Task submitter] INFO  nextflow.Session - [96/450d87] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (78)
May-11 11:16:45.691 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 509; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (76); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e9/5dd5306c5437c7d2698fa42b12eaa1]
May-11 11:16:45.694 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:45.694 [Task submitter] INFO  nextflow.Session - [f9/1caaaf] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (82)
May-11 11:16:48.131 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 505; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (72); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c5/9005d83a8f5c57f927f80663bfd7ae]
May-11 11:16:48.134 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:48.134 [Task submitter] INFO  nextflow.Session - [83/dca96c] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (77)
May-11 11:16:48.820 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 520; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (87); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/15/78274496d5ad8ed9a296731aeeb8cb]
May-11 11:16:48.823 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:48.824 [Task submitter] INFO  nextflow.Session - [34/3102a8] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (79)
May-11 11:16:49.398 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 467; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (34); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/12/fa311584b54523b049adee2386a1f8]
May-11 11:16:49.401 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:49.401 [Task submitter] INFO  nextflow.Session - [0e/51b866] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (84)
May-11 11:16:49.478 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 451; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (18); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/99/2d45acab008740729cb308118c7639]
May-11 11:16:49.494 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:49.494 [Task submitter] INFO  nextflow.Session - [0c/eb6e96] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (85)
May-11 11:16:51.568 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 511; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (78); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/96/450d87a98fbcb2f9cc835735c2d297]
May-11 11:16:51.573 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:51.573 [Task submitter] INFO  nextflow.Session - [63/d00fa0] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (83)
May-11 11:16:53.018 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 515; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (82); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f9/1caaafb26e59de287bbef5a3044438]
May-11 11:16:53.022 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:53.022 [Task submitter] INFO  nextflow.Session - [1f/56b202] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (88)
May-11 11:16:55.017 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 510; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (77); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/83/dca96ceb9b65f53ca09057c3a852ac]
May-11 11:16:55.020 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:55.020 [Task submitter] INFO  nextflow.Session - [73/4ffb43] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (53)
May-11 11:16:56.488 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 512; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (79); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/34/3102a8f7917222ccf373ce06a56cfe]
May-11 11:16:56.492 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:56.492 [Task submitter] INFO  nextflow.Session - [37/daf1f3] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (81)
May-11 11:16:57.037 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 518; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (85); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0c/eb6e96f472cf0adabfb59a59b3dc29]
May-11 11:16:57.041 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:57.041 [Task submitter] INFO  nextflow.Session - [d3/abdaac] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (57)
May-11 11:16:58.329 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 517; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (84); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0e/51b866e1f26ccd9e5dff360db9c361]
May-11 11:16:58.334 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:58.334 [Task submitter] INFO  nextflow.Session - [61/a33d9d] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (86)
May-11 11:16:59.185 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 516; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (83); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/63/d00fa01bff6f3473c96a994fecf17b]
May-11 11:16:59.188 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:16:59.188 [Task submitter] INFO  nextflow.Session - [04/eda0a7] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (67)
May-11 11:17:00.688 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 521; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (88); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1f/56b202d7ea0d396d35ed4885ecc31e]
May-11 11:17:00.692 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:00.692 [Task submitter] INFO  nextflow.Session - [23/ced40f] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (80)
May-11 11:17:04.463 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 490; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (57); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d3/abdaacc5000902a4de09398b701ee6]
May-11 11:17:04.467 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:04.467 [Task submitter] INFO  nextflow.Session - [93/f34064] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (99)
May-11 11:17:04.500 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 514; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (81); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/37/daf1f3b21abffdf11685f51406c7f3]
May-11 11:17:04.503 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:04.503 [Task submitter] INFO  nextflow.Session - [73/008423] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (75)
May-11 11:17:05.963 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 486; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (53); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/73/4ffb43fcc3e449b12b95df8409aaaa]
May-11 11:17:05.966 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:05.966 [Task submitter] INFO  nextflow.Session - [2a/045e9d] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (91)
May-11 11:17:06.412 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 519; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (86); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/61/a33d9dca6b5c044267fe5ecf16ffe7]
May-11 11:17:06.415 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:06.415 [Task submitter] INFO  nextflow.Session - [2a/cc783d] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (92)
May-11 11:17:07.364 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 500; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (67); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/04/eda0a7d70ccd0077389e5ceb074767]
May-11 11:17:07.368 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:07.368 [Task submitter] INFO  nextflow.Session - [71/2f96ea] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (98)
May-11 11:17:10.421 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 513; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (80); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/23/ced40fd4d5a2db5ef14456033f5956]
May-11 11:17:10.424 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:10.424 [Task submitter] INFO  nextflow.Session - [ea/f43982] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (90)
May-11 11:17:11.398 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 532; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (99); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/93/f340647f5d2aa572732dded66ca2fa]
May-11 11:17:11.401 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:11.401 [Task submitter] INFO  nextflow.Session - [b3/d7c147] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (93)
May-11 11:17:11.966 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 508; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (75); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/73/008423159f56bc5a30d38e2b838b71]
May-11 11:17:11.970 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:11.970 [Task submitter] INFO  nextflow.Session - [d9/cc1a80] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (96)
May-11 11:17:13.013 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 524; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (91); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2a/045e9ddccfa669b521cd94ac2b0d72]
May-11 11:17:13.016 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:13.016 [Task submitter] INFO  nextflow.Session - [4c/388130] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (97)
May-11 11:17:13.576 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 525; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (92); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2a/cc783dd12d5796e922cfc02e6ab6d9]
May-11 11:17:13.579 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:13.579 [Task submitter] INFO  nextflow.Session - [fa/628c15] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (94)
May-11 11:17:13.582 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 531; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (98); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/71/2f96ea9fadb1faf0a8ef1b37b46e83]
May-11 11:17:13.584 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:13.584 [Task submitter] INFO  nextflow.Session - [ab/e61c3a] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (95)
May-11 11:17:17.588 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 523; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (90); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ea/f4398262ffe9b779d6c8211c1d0900]
May-11 11:17:17.591 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:17.591 [Task submitter] INFO  nextflow.Session - [93/b14597] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (89)
May-11 11:17:18.869 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 526; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (93); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b3/d7c147f7421ae13ec863f9a1cd5400]
May-11 11:17:18.873 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:18.873 [Task submitter] INFO  nextflow.Session - [ad/d7a7ad] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (100)
May-11 11:17:18.880 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 529; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (96); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d9/cc1a8093a717db5c95d6d0357b11d1]
May-11 11:17:18.883 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:18.883 [Task submitter] INFO  nextflow.Session - [95/dbdd87] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (101)
May-11 11:17:20.270 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 528; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (95); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ab/e61c3ad404a739e30c9320ed394c40]
May-11 11:17:20.273 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:20.273 [Task submitter] INFO  nextflow.Session - [e1/d6b6f8] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (102)
May-11 11:17:20.736 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 527; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (94); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fa/628c1551b503926bb8558f8aadd3e6]
May-11 11:17:20.740 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:20.740 [Task submitter] INFO  nextflow.Session - [23/824df9] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (104)
May-11 11:17:22.507 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 530; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (97); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4c/3881300812c5e436a4d617123c85d1]
May-11 11:17:22.509 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:22.509 [Task submitter] INFO  nextflow.Session - [3a/6afee2] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (103)
May-11 11:17:25.486 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 533; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (100); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ad/d7a7ad97a2d565e71009b059783f66]
May-11 11:17:25.488 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:25.488 [Task submitter] INFO  nextflow.Session - [2c/5bef67] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (111)
May-11 11:17:26.086 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 534; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (101); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/95/dbdd8767dd213e8e8e0080472bd85e]
May-11 11:17:26.089 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:26.089 [Task submitter] INFO  nextflow.Session - [04/782126] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (106)
May-11 11:17:26.534 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 522; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (89); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/93/b1459776f6d009b6a7752f957d273f]
May-11 11:17:26.537 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:26.537 [Task submitter] INFO  nextflow.Session - [b4/45bcce] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (116)
May-11 11:17:27.208 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 537; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (104); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/23/824df96c7d5b5be1ca8ae93bdb9911]
May-11 11:17:27.211 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:27.211 [Task submitter] INFO  nextflow.Session - [77/61fa18] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (109)
May-11 11:17:27.625 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 535; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (102); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e1/d6b6f824b3dae361c661afe54c679d]
May-11 11:17:27.628 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:27.628 [Task submitter] INFO  nextflow.Session - [90/40ef28] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (105)
May-11 11:17:30.856 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 536; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (103); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3a/6afee2788c78f88126df5743da9c68]
May-11 11:17:30.859 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:30.859 [Task submitter] INFO  nextflow.Session - [96/117b6b] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (127)
May-11 11:17:31.295 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 544; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (111); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2c/5bef67654c15f3f34f2a130c916e4f]
May-11 11:17:31.297 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:31.297 [Task submitter] INFO  nextflow.Session - [d2/064bed] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (107)
May-11 11:17:32.057 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 539; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (106); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/04/782126d909e04a7acc2cfb86fb7d54]
May-11 11:17:32.059 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:32.059 [Task submitter] INFO  nextflow.Session - [08/3f3ac9] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (122)
May-11 11:17:33.039 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 542; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (109); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/77/61fa1835231b98b756e2a19481eacc]
May-11 11:17:33.042 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:33.042 [Task submitter] INFO  nextflow.Session - [d0/c12642] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (121)
May-11 11:17:33.498 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 549; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (116); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b4/45bcce1153b3e106a7362fd490e47f]
May-11 11:17:33.501 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:33.501 [Task submitter] INFO  nextflow.Session - [d0/5932f1] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (115)
May-11 11:17:34.963 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 538; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (105); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/90/40ef28ea0b3aa93c3ece9a07411555]
May-11 11:17:34.966 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:34.966 [Task submitter] INFO  nextflow.Session - [97/a14963] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (119)
May-11 11:17:36.882 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 560; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (127); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/96/117b6b8b098546edbf3b65caee352a]
May-11 11:17:36.885 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:36.885 [Task submitter] INFO  nextflow.Session - [a4/1901a2] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (117)
May-11 11:17:37.781 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 555; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (122); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/08/3f3ac9b1ce2465c03e180d3855a68f]
May-11 11:17:37.783 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:37.783 [Task submitter] INFO  nextflow.Session - [c3/1507fd] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (126)
May-11 11:17:37.882 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 540; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (107); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d2/064bed0f8d2a632b2f0440e68296b3]
May-11 11:17:37.884 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:37.884 [Task submitter] INFO  nextflow.Session - [1a/abea4f] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (128)
May-11 11:17:38.821 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 554; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (121); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d0/c1264289f909267bad650d464483a3]
May-11 11:17:38.824 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:38.824 [Task submitter] INFO  nextflow.Session - [c1/f24a04] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (125)
May-11 11:17:39.322 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 548; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (115); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d0/5932f1faf7741291c3d8e6ad75de89]
May-11 11:17:39.326 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:39.327 [Task submitter] INFO  nextflow.Session - [38/49fd2a] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (118)
May-11 11:17:40.314 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 552; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (119); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/97/a14963e845ba27fdaa0c643a0be7c1]
May-11 11:17:40.317 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:40.317 [Task submitter] INFO  nextflow.Session - [39/5879dc] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (112)
May-11 11:17:42.747 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 550; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (117); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a4/1901a27d4eff7d23fe2298644701ef]
May-11 11:17:42.750 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:42.750 [Task submitter] INFO  nextflow.Session - [46/fbc5f7] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (113)
May-11 11:17:43.430 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 559; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (126); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c3/1507fdf075ff29962b13cd2f0f0a62]
May-11 11:17:43.433 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:43.433 [Task submitter] INFO  nextflow.Session - [3e/1a0214] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (108)
May-11 11:17:43.529 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 561; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (128); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1a/abea4f38bd0e1dc17187efeab4d5f9]
May-11 11:17:43.533 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:43.533 [Task submitter] INFO  nextflow.Session - [03/e44c19] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (114)
May-11 11:17:44.443 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 558; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (125); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c1/f24a04279e876384851c608f93810b]
May-11 11:17:44.446 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:44.446 [Task submitter] INFO  nextflow.Session - [c0/3bac53] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (131)
May-11 11:17:45.243 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 551; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (118); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/38/49fd2ab7eb68c1270b1a94611a7f57]
May-11 11:17:45.247 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:45.247 [Task submitter] INFO  nextflow.Session - [63/35a8cf] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (137)
May-11 11:17:48.191 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 545; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (112); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/39/5879dc38bda0ab8184b5be45b2a43d]
May-11 11:17:48.194 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:48.194 [Task submitter] INFO  nextflow.Session - [f8/3c8aed] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (123)
May-11 11:17:48.726 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 547; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (114); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/03/e44c190a7e933d610973a81633d4f9]
May-11 11:17:48.729 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:48.729 [Task submitter] INFO  nextflow.Session - [c0/384dc3] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (110)
May-11 11:17:49.007 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 541; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (108); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3e/1a0214dd7f9b065bc930ef5c729353]
May-11 11:17:49.009 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:49.009 [Task submitter] INFO  nextflow.Session - [34/172669] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (120)
May-11 11:17:49.803 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 546; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (113); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/46/fbc5f700dd146fab4863e77773b9f5]
May-11 11:17:49.807 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:49.807 [Task submitter] INFO  nextflow.Session - [5b/315183] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (124)
May-11 11:17:51.845 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 564; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (131); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c0/3bac5350cf4fe0dc463d92f68227ca]
May-11 11:17:51.849 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:51.849 [Task submitter] INFO  nextflow.Session - [b7/81d5a9] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (129)
May-11 11:17:53.800 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 556; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (123); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f8/3c8aed83a4534a0cfb9db55a0bce6c]
May-11 11:17:53.802 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:53.802 [Task submitter] INFO  nextflow.Session - [5b/7eb74f] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (134)
May-11 11:17:53.889 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 570; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (137); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/63/35a8cff2507d1c361582b606354b56]
May-11 11:17:53.892 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:53.892 [Task submitter] INFO  nextflow.Session - [c3/9667ee] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (139)
May-11 11:17:54.771 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 553; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (120); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/34/1726690d1f9c7a28e679289300fb92]
May-11 11:17:54.775 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:54.775 [Task submitter] INFO  nextflow.Session - [b6/3e8638] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (141)
May-11 11:17:54.779 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 543; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (110); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c0/384dc36e2798608cdee110dc27ee86]
May-11 11:17:54.783 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:54.783 [Task submitter] INFO  nextflow.Session - [d7/878b2e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (130)
May-11 11:17:57.899 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 562; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (129); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b7/81d5a93cc4187b32c63c2e2da74fc6]
May-11 11:17:57.902 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:57.902 [Task submitter] INFO  nextflow.Session - [b9/cf208e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (138)
May-11 11:17:59.398 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 557; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (124); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5b/315183467a155e856d78da3dffdb6a]
May-11 11:17:59.402 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:17:59.402 [Task submitter] INFO  nextflow.Session - [62/af8be8] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (140)
May-11 11:18:00.401 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 563; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (130); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d7/878b2ef7e2c79551b4559fa7bde035]
May-11 11:18:00.403 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:00.403 [Task submitter] INFO  nextflow.Session - [1e/def7ac] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (144)
May-11 11:18:00.751 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 567; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (134); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5b/7eb74f15c305a65791d1855520bf5d]
May-11 11:18:00.754 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:00.754 [Task submitter] INFO  nextflow.Session - [49/747e83] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (133)
May-11 11:18:01.182 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 572; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (139); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c3/9667ee952a05931fbf431111fca120]
May-11 11:18:01.184 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:01.184 [Task submitter] INFO  nextflow.Session - [64/f70925] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (142)
May-11 11:18:02.520 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 574; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (141); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b6/3e8638e1fabaafd34c730dcd3db3c6]
May-11 11:18:02.524 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:02.524 [Task submitter] INFO  nextflow.Session - [c3/cb4b2a] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (132)
May-11 11:18:05.033 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 571; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (138); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b9/cf208e20ebe8357668cf195263c0ef]
May-11 11:18:05.037 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:05.037 [Task submitter] INFO  nextflow.Session - [1f/f6ee8b] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (135)
May-11 11:18:05.802 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 573; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (140); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/62/af8be847d4a20d5951a17be7f6a99e]
May-11 11:18:05.805 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:05.805 [Task submitter] INFO  nextflow.Session - [d5/45b73b] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (136)
May-11 11:18:07.124 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 566; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (133); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/49/747e831a65ad5efddbf46317693e94]
May-11 11:18:07.127 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:07.127 [Task submitter] INFO  nextflow.Session - [e5/df8507] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (146)
May-11 11:18:08.872 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 577; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (144); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1e/def7ac843661031ee02fb0539764a3]
May-11 11:18:08.876 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:08.876 [Task submitter] INFO  nextflow.Session - [61/916819] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (147)
May-11 11:18:08.933 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 565; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (132); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c3/cb4b2a868c67e643a834a562d9a9b0]
May-11 11:18:08.936 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:08.936 [Task submitter] INFO  nextflow.Session - [3a/b7e0a3] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (143)
May-11 11:18:09.267 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 575; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (142); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/64/f7092561474bb0d2b30cd2743d9193]
May-11 11:18:09.269 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:09.269 [Task submitter] INFO  nextflow.Session - [a3/5ffdda] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (145)
May-11 11:18:12.425 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 568; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (135); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1f/f6ee8b681e295e3836b76b985f533a]
May-11 11:18:12.427 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:12.427 [Task submitter] INFO  nextflow.Session - [c1/d8bd98] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (148)
May-11 11:18:13.645 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 569; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (136); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d5/45b73b02dca024ad2d8488d14c8474]
May-11 11:18:13.648 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:13.648 [Task submitter] INFO  nextflow.Session - [cb/d2175a] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (149)
May-11 11:18:13.771 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 579; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (146); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e5/df85079a8eab48ff2f58f86d78a490]
May-11 11:18:13.774 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:13.774 [Task submitter] INFO  nextflow.Session - [92/98dfe6] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (151)
May-11 11:18:16.974 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 580; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (147); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/61/916819b974ad4914ed40ba62699f35]
May-11 11:18:16.978 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:16.978 [Task submitter] INFO  nextflow.Session - [f7/511f53] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (152)
May-11 11:18:17.397 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 576; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (143); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3a/b7e0a3d4cc1e913b5ef5535380c518]
May-11 11:18:17.400 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:17.400 [Task submitter] INFO  nextflow.Session - [30/82de1b] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (150)
May-11 11:18:17.823 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 578; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (145); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a3/5ffdda520928dd7b4401d1efbb5945]
May-11 11:18:17.825 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:17.825 [Task submitter] INFO  nextflow.Session - [67/8b7894] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (154)
May-11 11:18:20.926 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 581; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (148); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c1/d8bd9885a9a837273094cba4cb079a]
May-11 11:18:20.929 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:20.929 [Task submitter] INFO  nextflow.Session - [d4/6338fe] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (153)
May-11 11:18:21.062 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 582; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (149); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/cb/d2175a499b67d94ab70630a340c45e]
May-11 11:18:21.065 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:21.065 [Task submitter] INFO  nextflow.Session - [74/8c02b0] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (158)
May-11 11:18:21.153 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 584; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (151); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/92/98dfe65596ecac8454d63d8b6efcab]
May-11 11:18:21.156 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:21.157 [Task submitter] INFO  nextflow.Session - [9d/459e88] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (157)
May-11 11:18:24.700 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 583; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (150); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/30/82de1b770dbfc72d64ef7f0ba5a173]
May-11 11:18:24.702 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:24.703 [Task submitter] INFO  nextflow.Session - [37/cb8bfb] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (156)
May-11 11:18:24.800 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 585; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (152); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f7/511f53b9ba7c243cfb0d9f7aed4111]
May-11 11:18:24.803 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:24.803 [Task submitter] INFO  nextflow.Session - [b5/df411b] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (155)
May-11 11:18:25.967 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 587; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (154); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/67/8b7894bdc217f8f1171d958ea766ac]
May-11 11:18:25.972 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:25.972 [Task submitter] INFO  nextflow.Session - [80/978477] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (159)
May-11 11:18:27.968 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 590; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (157); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9d/459e8859abd70d401f326afa9ea3d0]
May-11 11:18:27.972 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:27.972 [Task submitter] INFO  nextflow.Session - [1d/bef826] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (160)
May-11 11:18:28.525 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 591; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (158); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/74/8c02b082ac44ea3ab2e6c488772e17]
May-11 11:18:28.528 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:28.528 [Task submitter] INFO  nextflow.Session - [93/bfd7a6] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (161)
May-11 11:18:29.355 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 586; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (153); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d4/6338fed5873ad493e06a1152143e32]
May-11 11:18:29.373 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:29.373 [Task submitter] INFO  nextflow.Session - [d7/c9c42a] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (165)
May-11 11:18:31.931 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 588; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (155); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b5/df411b454ae2a1ac1c57ed8409d4c1]
May-11 11:18:31.934 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:31.934 [Task submitter] INFO  nextflow.Session - [99/ab0d8d] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (166)
May-11 11:18:32.877 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 592; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (159); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/80/97847734323624909b673da38ba571]
May-11 11:18:32.879 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:32.879 [Task submitter] INFO  nextflow.Session - [30/442475] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (172)
May-11 11:18:36.190 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 598; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (165); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d7/c9c42a2bffda1e6eb58f847c0f0c3e]
May-11 11:18:36.193 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:36.193 [Task submitter] INFO  nextflow.Session - [5b/3df680] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (173)
May-11 11:18:36.263 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 593; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (160); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1d/bef82637d1e8e3f70a23e4dc61a6de]
May-11 11:18:36.267 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:36.267 [Task submitter] INFO  nextflow.Session - [6a/6942a3] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (163)
May-11 11:18:36.267 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 594; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (161); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/93/bfd7a617bbe9912369f05fcb3de5da]
May-11 11:18:36.270 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:36.270 [Task submitter] INFO  nextflow.Session - [d2/8ac91e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (164)
May-11 11:18:37.065 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 589; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/37/cb8bfbd6f4fe97918c6d10c2f179d4]
~> TaskHandler[id: 599; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (166); status: RUNNING; exit: -; error: -; workDir: Ath_work2/99/ab0d8d9f0a21de5599db1ac7d06e09]
~> TaskHandler[id: 605; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (172); status: RUNNING; exit: -; error: -; workDir: Ath_work2/30/44247514c43f72c31ef563bd50ebc0]
~> TaskHandler[id: 606; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (173); status: RUNNING; exit: -; error: -; workDir: Ath_work2/5b/3df6806acad10890ad663550ea867e]
~> TaskHandler[id: 596; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (163); status: RUNNING; exit: -; error: -; workDir: Ath_work2/6a/6942a3bea7b3a4029e23a27e70cb93]
~> TaskHandler[id: 597; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (164); status: RUNNING; exit: -; error: -; workDir: Ath_work2/d2/8ac91eabcc4109e202cc0d790679a4]
May-11 11:18:37.078 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 599; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (166); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/99/ab0d8d9f0a21de5599db1ac7d06e09]
May-11 11:18:37.080 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:37.080 [Task submitter] INFO  nextflow.Session - [29/78841d] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (170)
May-11 11:18:38.627 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 605; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (172); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/30/44247514c43f72c31ef563bd50ebc0]
May-11 11:18:38.631 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:38.631 [Task submitter] INFO  nextflow.Session - [d0/e97b69] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (169)
May-11 11:18:41.692 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 606; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (173); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5b/3df6806acad10890ad663550ea867e]
May-11 11:18:41.695 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:41.695 [Task submitter] INFO  nextflow.Session - [d5/6df494] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (176)
May-11 11:18:42.127 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 596; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (163); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6a/6942a3bea7b3a4029e23a27e70cb93]
May-11 11:18:42.129 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:42.130 [Task submitter] INFO  nextflow.Session - [fc/eec805] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (168)
May-11 11:18:42.631 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 603; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (170); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/29/78841db81486bed3dfaf78033f9e11]
May-11 11:18:42.634 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:42.634 [Task submitter] INFO  nextflow.Session - [95/5a99fb] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (171)
May-11 11:18:43.964 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 597; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (164); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d2/8ac91eabcc4109e202cc0d790679a4]
May-11 11:18:43.967 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:43.967 [Task submitter] INFO  nextflow.Session - [99/14265a] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (178)
May-11 11:18:44.202 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 602; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (169); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d0/e97b696b0417e6c3a986c3a9a4ce04]
May-11 11:18:44.205 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:44.205 [Task submitter] INFO  nextflow.Session - [a5/cd9353] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (175)
May-11 11:18:47.608 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 609; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (176); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d5/6df4947a04f025239dc35030d3fd84]
May-11 11:18:47.611 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:47.611 [Task submitter] INFO  nextflow.Session - [8c/870445] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (181)
May-11 11:18:48.403 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 604; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (171); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/95/5a99fb264a8e3b61c033559f84ded8]
May-11 11:18:48.405 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:48.406 [Task submitter] INFO  nextflow.Session - [54/8da625] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (183)
May-11 11:18:49.829 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 611; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (178); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/99/14265a2075bcc6a089f9901ed80639]
May-11 11:18:49.832 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:49.832 [Task submitter] INFO  nextflow.Session - [22/8c91ca] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (182)
May-11 11:18:49.967 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 608; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (175); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a5/cd935397797535e4a2cd145873bebe]
May-11 11:18:49.970 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:49.970 [Task submitter] INFO  nextflow.Session - [9d/a9a21d] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (179)
May-11 11:18:50.619 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 601; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (168); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fc/eec8054c0b9a94e143fd61312fe738]
May-11 11:18:50.621 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:50.622 [Task submitter] INFO  nextflow.Session - [4f/8339ef] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (177)
May-11 11:18:53.149 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 614; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (181); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8c/87044526b702ef8b686270db25b68c]
May-11 11:18:53.152 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:53.152 [Task submitter] INFO  nextflow.Session - [89/08cd4f] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (184)
May-11 11:18:54.286 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 616; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (183); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/54/8da62524e0734387558533fee547d9]
May-11 11:18:54.290 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:54.290 [Task submitter] INFO  nextflow.Session - [0d/92e924] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (180)
May-11 11:18:55.844 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 615; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (182); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/22/8c91ca19d54e36a41241393a41e7d8]
May-11 11:18:55.848 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:55.848 [Task submitter] INFO  nextflow.Session - [53/a6851c] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (167)
May-11 11:18:56.407 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 610; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (177); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4f/8339effba575b3d494ca5e5d6f288a]
May-11 11:18:56.410 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:56.410 [Task submitter] INFO  nextflow.Session - [72/4e9de8] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (162)
May-11 11:18:58.605 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 612; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (179); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9d/a9a21dd534757fa1b78a03a6b7b977]
May-11 11:18:58.608 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:58.608 [Task submitter] INFO  nextflow.Session - [42/b82fc8] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (185)
May-11 11:18:59.628 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 613; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (180); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0d/92e92448e06aa3863ebc97947c8597]
May-11 11:18:59.630 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:59.630 [Task submitter] INFO  nextflow.Session - [d5/39f20e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (174)
May-11 11:18:59.877 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 617; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (184); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/89/08cd4ff134f33a30c266258107417a]
May-11 11:18:59.879 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:18:59.880 [Task submitter] INFO  nextflow.Session - [90/e88e1c] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (186)
May-11 11:19:01.420 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 600; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (167); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/53/a6851cbc5cf470bd24cdf089a0a266]
May-11 11:19:01.423 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:01.423 [Task submitter] INFO  nextflow.Session - [ca/212e22] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (187)
May-11 11:19:02.229 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 595; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (162); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/72/4e9de8aa7c6fcd306e907b74e0af63]
May-11 11:19:02.231 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:02.231 [Task submitter] INFO  nextflow.Session - [85/374b15] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (189)
May-11 11:19:04.906 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 618; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (185); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/42/b82fc81cff2c443d94581cb828be03]
May-11 11:19:04.909 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:04.909 [Task submitter] INFO  nextflow.Session - [02/f7bede] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (188)
May-11 11:19:05.198 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 607; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (174); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d5/39f20ee3a564c503dbf09f5a95f251]
May-11 11:19:05.200 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:05.200 [Task submitter] INFO  nextflow.Session - [80/ea799c] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (191)
May-11 11:19:07.990 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 620; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (187); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ca/212e220077ffd1375ebd06356d01c1]
May-11 11:19:07.993 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:07.993 [Task submitter] INFO  nextflow.Session - [c5/b99499] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (190)
May-11 11:19:08.722 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 619; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (186); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/90/e88e1c3ab18d12c2017b9b0fbb06b6]
May-11 11:19:08.725 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:08.725 [Task submitter] INFO  nextflow.Session - [c8/e8eb10] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (192)
May-11 11:19:09.421 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 622; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (189); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/85/374b15509840cb625e1bda329f577b]
May-11 11:19:09.425 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:09.425 [Task submitter] INFO  nextflow.Session - [22/94c954] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (193)
May-11 11:19:11.054 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 621; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (188); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/02/f7bedecc891e3bc563b73ada9eef04]
May-11 11:19:11.058 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:11.058 [Task submitter] INFO  nextflow.Session - [20/3acffe] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (194)
May-11 11:19:11.726 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 624; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (191); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/80/ea799ccb248a25884dd11c981dffe4]
May-11 11:19:11.728 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:11.729 [Task submitter] INFO  nextflow.Session - [0e/ad2dc8] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (196)
May-11 11:19:14.934 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 623; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (190); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c5/b99499bbef073814a8b692db647df3]
May-11 11:19:14.937 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:14.937 [Task submitter] INFO  nextflow.Session - [fb/4b0e21] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (198)
May-11 11:19:16.386 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 625; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (192); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c8/e8eb102d1b6d6714a509a454706481]
May-11 11:19:16.390 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:16.390 [Task submitter] INFO  nextflow.Session - [59/617c10] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (199)
May-11 11:19:16.497 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 626; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (193); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/22/94c9549eeb9bab72b6443c9e9a306c]
May-11 11:19:16.499 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:16.499 [Task submitter] INFO  nextflow.Session - [7e/cb501e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (200)
May-11 11:19:17.625 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 627; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (194); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/20/3acffe25b8d76fbd1f21b640afd972]
May-11 11:19:17.628 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:17.628 [Task submitter] INFO  nextflow.Session - [f6/95c16d] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (197)
May-11 11:19:19.463 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 629; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (196); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0e/ad2dc874ef5b8d31c7a5deac5151d4]
May-11 11:19:19.466 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:19.466 [Task submitter] INFO  nextflow.Session - [07/cc6df3] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (195)
May-11 11:19:21.545 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 631; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (198); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fb/4b0e2143b2e68804dc4bd01c654eb1]
May-11 11:19:21.547 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:21.547 [Task submitter] INFO  nextflow.Session - [bb/d40568] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (204)
May-11 11:19:22.603 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 633; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (200); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7e/cb501eeb20a216207f439b866d2adf]
May-11 11:19:22.605 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:22.605 [Task submitter] INFO  nextflow.Session - [23/a734e1] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (203)
May-11 11:19:22.915 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 632; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (199); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/59/617c1097ee804241f7446680e63fc7]
May-11 11:19:22.917 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:22.917 [Task submitter] INFO  nextflow.Session - [6f/02e1af] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (202)
May-11 11:19:24.618 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 630; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (197); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f6/95c16dd444d21cbf21b585c2a035e3]
May-11 11:19:24.621 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:24.621 [Task submitter] INFO  nextflow.Session - [4b/f36589] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (201)
May-11 11:19:26.430 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 628; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (195); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/07/cc6df39fb8d680b76dac264d91a19c]
May-11 11:19:26.433 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:26.433 [Task submitter] INFO  nextflow.Session - [30/aa6818] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (207)
May-11 11:19:27.588 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 637; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (204); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bb/d4056812772af7e66138f356ef265d]
May-11 11:19:27.590 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:27.590 [Task submitter] INFO  nextflow.Session - [4a/7bab4e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (205)
May-11 11:19:30.154 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 635; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (202); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6f/02e1afad513f8411ea284484bb7650]
May-11 11:19:30.157 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:30.157 [Task submitter] INFO  nextflow.Session - [09/eee544] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (209)
May-11 11:19:30.635 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 636; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (203); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/23/a734e110fc53e1023f3dae4f81dc19]
May-11 11:19:30.637 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:30.637 [Task submitter] INFO  nextflow.Session - [ac/aec6cd] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (206)
May-11 11:19:31.468 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 634; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (201); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4b/f36589a581d6234e6c1b320d7e3c9c]
May-11 11:19:31.470 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:31.470 [Task submitter] INFO  nextflow.Session - [4a/4a2fa5] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (208)
May-11 11:19:34.123 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 638; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (205); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4a/7bab4e6e6a218d468111f552a85a0a]
May-11 11:19:34.125 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:34.125 [Task submitter] INFO  nextflow.Session - [1a/e3a704] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (212)
May-11 11:19:34.840 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 640; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (207); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/30/aa68189364aebdb947be7ca6f3650c]
May-11 11:19:34.843 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:34.843 [Task submitter] INFO  nextflow.Session - [75/c375fb] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (211)
May-11 11:19:37.519 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 639; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (206); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ac/aec6cdaf4b9e32878053bdf7c8331c]
May-11 11:19:37.522 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:37.522 [Task submitter] INFO  nextflow.Session - [ff/2a2953] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (213)
May-11 11:19:37.619 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 642; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (209); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/09/eee54464f349401822321c2d84cb37]
May-11 11:19:37.622 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:37.623 [Task submitter] INFO  nextflow.Session - [1c/286472] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (210)
May-11 11:19:38.405 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 641; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (208); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4a/4a2fa548fed28b51012afba48dc541]
May-11 11:19:38.407 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:38.407 [Task submitter] INFO  nextflow.Session - [82/077b01] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (215)
May-11 11:19:40.866 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 645; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (212); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1a/e3a7048310d4d686c5ca604f66e4f7]
May-11 11:19:40.869 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:40.869 [Task submitter] INFO  nextflow.Session - [8c/ebfcd4] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (216)
May-11 11:19:41.749 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 644; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (211); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/75/c375fb145d58aa0d88b395bb2702f6]
May-11 11:19:41.753 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:41.753 [Task submitter] INFO  nextflow.Session - [fd/db51b9] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (218)
May-11 11:19:44.570 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 646; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (213); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ff/2a2953e5b92c345e1469c490eb2e3f]
May-11 11:19:44.573 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:44.573 [Task submitter] INFO  nextflow.Session - [35/eb94c9] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (217)
May-11 11:19:45.400 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 643; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (210); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1c/286472d15ee6c9bac59f518573d05c]
May-11 11:19:45.403 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:45.403 [Task submitter] INFO  nextflow.Session - [66/307eff] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (214)
May-11 11:19:46.317 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 648; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (215); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/82/077b01181962e618aeafc3eda3a878]
May-11 11:19:46.319 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:46.320 [Task submitter] INFO  nextflow.Session - [62/76d952] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (220)
May-11 11:19:48.245 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 649; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (216); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8c/ebfcd46e38a51fa9fc152e8560286b]
May-11 11:19:48.248 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:48.248 [Task submitter] INFO  nextflow.Session - [da/4713fc] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (219)
May-11 11:19:49.719 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 651; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (218); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fd/db51b92cffb79f1ba5899ac1c08dc9]
May-11 11:19:49.721 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:49.722 [Task submitter] INFO  nextflow.Session - [ba/9a1faa] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (222)
May-11 11:19:52.225 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 650; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (217); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/35/eb94c9ea077fcf7cb5d212c3d6d4db]
May-11 11:19:52.227 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:52.227 [Task submitter] INFO  nextflow.Session - [ac/0fd560] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (223)
May-11 11:19:53.091 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 647; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (214); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/66/307effc72146533697c0212e71e1a1]
May-11 11:19:53.094 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:53.094 [Task submitter] INFO  nextflow.Session - [a4/ce0976] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (224)
May-11 11:19:53.282 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 653; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (220); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/62/76d952894f5f5eb0b5fc06f47e0d95]
May-11 11:19:53.284 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:53.284 [Task submitter] INFO  nextflow.Session - [f6/9cb772] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (226)
May-11 11:19:55.937 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 655; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (222); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ba/9a1faa298f9ff6319cbf252f5eb175]
May-11 11:19:55.940 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:55.940 [Task submitter] INFO  nextflow.Session - [a3/050a4b] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (227)
May-11 11:19:56.732 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 652; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (219); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/da/4713fc22fe77ab066a88bb783b4b65]
May-11 11:19:56.735 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:56.735 [Task submitter] INFO  nextflow.Session - [c3/67d3ff] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (229)
May-11 11:19:59.411 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 657; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (224); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a4/ce0976c14551ec91ac10ff5caf4579]
May-11 11:19:59.414 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:59.414 [Task submitter] INFO  nextflow.Session - [64/496a46] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (231)
May-11 11:19:59.594 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 656; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (223); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ac/0fd56006da32cdcfe7e27ba4dced71]
May-11 11:19:59.598 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:19:59.598 [Task submitter] INFO  nextflow.Session - [4e/04fc02] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (228)
May-11 11:20:01.588 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 659; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (226); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f6/9cb772742e8c61265cac755143b428]
May-11 11:20:01.591 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:01.591 [Task submitter] INFO  nextflow.Session - [3c/18116b] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (230)
May-11 11:20:02.714 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 660; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (227); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a3/050a4bfa6ca6de81db74a7beedeabc]
May-11 11:20:02.717 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:02.717 [Task submitter] INFO  nextflow.Session - [45/fe9937] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (221)
May-11 11:20:05.849 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 662; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (229); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c3/67d3ffaf4e7ac485e5c2eaf54ef387]
May-11 11:20:05.852 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:05.852 [Task submitter] INFO  nextflow.Session - [33/70ce1e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (225)
May-11 11:20:07.314 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 664; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (231); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/64/496a469a6dd52ec6b2233bb71c2ae6]
May-11 11:20:07.316 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:07.316 [Task submitter] INFO  nextflow.Session - [f8/a9a991] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (232)
May-11 11:20:07.702 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 661; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (228); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4e/04fc02ba59919eda7dc636170bd3ca]
May-11 11:20:07.705 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:07.705 [Task submitter] INFO  nextflow.Session - [24/cef32a] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (233)
May-11 11:20:09.206 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 654; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (221); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/45/fe9937de55e9712fc9a91729eae5d2]
May-11 11:20:09.209 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:09.209 [Task submitter] INFO  nextflow.Session - [39/77ef99] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (234)
May-11 11:20:09.396 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 663; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (230); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3c/18116b6dbfcb83b52c6ede5a354a26]
May-11 11:20:09.399 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:09.399 [Task submitter] INFO  nextflow.Session - [76/446332] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (235)
May-11 11:20:14.602 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 665; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (232); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f8/a9a991fbaf1c91f1ac6ac0ca454587]
May-11 11:20:14.605 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:14.605 [Task submitter] INFO  nextflow.Session - [cd/ba9a1a] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (237)
May-11 11:20:14.618 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 658; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (225); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/33/70ce1e8137fef5034dd99fd6461db9]
May-11 11:20:14.620 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:14.620 [Task submitter] INFO  nextflow.Session - [ae/6c951b] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (238)
May-11 11:20:15.077 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 666; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (233); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/24/cef32a3813f3f03677bfe6b5d457e3]
May-11 11:20:15.080 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:15.080 [Task submitter] INFO  nextflow.Session - [32/be84c1] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (236)
May-11 11:20:15.455 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 667; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (234); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/39/77ef997a6a1c2d15508364e3db796b]
May-11 11:20:15.458 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:15.458 [Task submitter] INFO  nextflow.Session - [a7/e27840] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (239)
May-11 11:20:15.459 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 305 -- tasks to be submitted are shown below
~> TaskHandler[id: 673; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (240); status: NEW; exit: -; error: -; workDir: Ath_work2/92/6d54ba1f05f09c4a22a0b428e56857]
~> TaskHandler[id: 674; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (241); status: NEW; exit: -; error: -; workDir: Ath_work2/7b/7a07e76427d64814c9b3b7ac6ed4be]
~> TaskHandler[id: 675; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (242); status: NEW; exit: -; error: -; workDir: Ath_work2/2e/ca13e578674c1845e543727297249f]
~> TaskHandler[id: 676; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (243); status: NEW; exit: -; error: -; workDir: Ath_work2/04/3d8b56ce00fcddd5da5e48500cb7de]
~> TaskHandler[id: 677; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (244); status: NEW; exit: -; error: -; workDir: Ath_work2/b5/3d955b4199ce931f236ba4796f26df]
~> TaskHandler[id: 678; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (245); status: NEW; exit: -; error: -; workDir: Ath_work2/8f/041d3122fda266f65789cb99740b11]
~> TaskHandler[id: 681; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (248); status: NEW; exit: -; error: -; workDir: Ath_work2/3e/54acf966a33ea64476f1e2b1ab60cb]
~> TaskHandler[id: 682; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (249); status: NEW; exit: -; error: -; workDir: Ath_work2/bf/899ac4104692c7b83fe142a31aa84a]
~> TaskHandler[id: 683; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (250); status: NEW; exit: -; error: -; workDir: Ath_work2/55/64276eb75e38d7d4c27e6001ce0950]
~> TaskHandler[id: 684; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (251); status: NEW; exit: -; error: -; workDir: Ath_work2/00/1097d8785a9eecfe6b088ccc319690]
.. remaining tasks omitted.
May-11 11:20:21.375 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 669; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (236); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/32/be84c1c4659c0621b3bef9afb1e2fd]
May-11 11:20:21.377 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:21.377 [Task submitter] INFO  nextflow.Session - [92/6d54ba] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (240)
May-11 11:20:21.594 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 671; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (238); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ae/6c951b77273dd1b42c93af522dd7eb]
May-11 11:20:21.596 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:21.596 [Task submitter] INFO  nextflow.Session - [7b/7a07e7] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (241)
May-11 11:20:22.275 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 672; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (239); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a7/e278408f519cf5062256955ac9803f]
May-11 11:20:22.278 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:22.278 [Task submitter] INFO  nextflow.Session - [2e/ca13e5] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (242)
May-11 11:20:23.221 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 670; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (237); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/cd/ba9a1a2f9768b5e87aacea2dbc8e8d]
May-11 11:20:23.224 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:23.224 [Task submitter] INFO  nextflow.Session - [04/3d8b56] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (243)
May-11 11:20:28.862 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 673; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (240); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/92/6d54ba1f05f09c4a22a0b428e56857]
May-11 11:20:28.866 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:28.866 [Task submitter] INFO  nextflow.Session - [b5/3d955b] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (244)
May-11 11:20:30.292 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 674; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (241); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7b/7a07e76427d64814c9b3b7ac6ed4be]
May-11 11:20:30.295 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:30.295 [Task submitter] INFO  nextflow.Session - [8f/041d31] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (245)
May-11 11:20:30.458 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 675; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (242); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2e/ca13e578674c1845e543727297249f]
May-11 11:20:30.461 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:30.461 [Task submitter] INFO  nextflow.Session - [3e/54acf9] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (248)
May-11 11:20:31.859 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 676; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (243); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/04/3d8b56ce00fcddd5da5e48500cb7de]
May-11 11:20:31.863 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:31.863 [Task submitter] INFO  nextflow.Session - [bf/899ac4] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (249)
May-11 11:20:35.875 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 677; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (244); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b5/3d955b4199ce931f236ba4796f26df]
May-11 11:20:35.878 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:35.878 [Task submitter] INFO  nextflow.Session - [55/64276e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (250)
May-11 11:20:37.020 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 681; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (248); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3e/54acf966a33ea64476f1e2b1ab60cb]
May-11 11:20:37.024 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:37.024 [Task submitter] INFO  nextflow.Session - [00/1097d8] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (251)
May-11 11:20:37.115 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 678; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (245); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8f/041d3122fda266f65789cb99740b11]
May-11 11:20:37.119 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:37.119 [Task submitter] INFO  nextflow.Session - [b6/b454ca] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (253)
May-11 11:20:39.160 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 668; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (235); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/76/44633214e5eec2227958d9816ad6c5]
May-11 11:20:39.163 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:39.163 [Task submitter] INFO  nextflow.Session - [f9/56f44f] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (252)
May-11 11:20:39.971 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 682; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (249); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bf/899ac4104692c7b83fe142a31aa84a]
May-11 11:20:39.973 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:39.973 [Task submitter] INFO  nextflow.Session - [b9/178747] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (254)
May-11 11:20:43.266 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 683; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (250); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/55/64276eb75e38d7d4c27e6001ce0950]
May-11 11:20:43.268 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:43.269 [Task submitter] INFO  nextflow.Session - [78/402897] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (247)
May-11 11:20:43.503 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 686; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (253); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b6/b454cace2448012b0e39a25074dd70]
May-11 11:20:43.505 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:43.505 [Task submitter] INFO  nextflow.Session - [2b/b8c380] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (255)
May-11 11:20:44.020 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 684; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (251); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/00/1097d8785a9eecfe6b088ccc319690]
May-11 11:20:44.023 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:44.023 [Task submitter] INFO  nextflow.Session - [f0/04eb29] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (246)
May-11 11:20:46.096 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 685; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (252); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f9/56f44f9a3c2fe205285acd4effa601]
May-11 11:20:46.100 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:46.100 [Task submitter] INFO  nextflow.Session - [8c/8ba97d] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (256)
May-11 11:20:46.605 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 687; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (254); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b9/178747e409caa04f5e6e79f446ee5d]
May-11 11:20:46.608 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:46.608 [Task submitter] INFO  nextflow.Session - [ae/14497d] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (258)
May-11 11:20:49.717 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 688; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (255); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2b/b8c3806a6aede812dbfdcf2355b203]
May-11 11:20:49.720 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:49.720 [Task submitter] INFO  nextflow.Session - [4d/dc5f6f] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (257)
May-11 11:20:51.220 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 680; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (247); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/78/4028974d84638150d47431cf5d1aa7]
May-11 11:20:51.223 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:51.223 [Task submitter] INFO  nextflow.Session - [75/20841f] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (259)
May-11 11:20:51.879 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 679; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (246); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f0/04eb29c76485c65f79a0cb2260136e]
May-11 11:20:51.882 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:51.882 [Task submitter] INFO  nextflow.Session - [ad/0637bd] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (260)
May-11 11:20:52.774 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 691; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (258); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ae/14497df723b703c62319b56df73f7f]
May-11 11:20:52.777 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:52.777 [Task submitter] INFO  nextflow.Session - [82/c4dc7b] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (261)
May-11 11:20:53.951 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 689; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (256); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8c/8ba97d4bb3f6cb24a58247ab41b669]
May-11 11:20:53.954 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:53.954 [Task submitter] INFO  nextflow.Session - [93/d8ed70] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (262)
May-11 11:20:56.749 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 690; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (257); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4d/dc5f6fc87825b5b00931cb1b4352bd]
May-11 11:20:56.752 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:56.752 [Task submitter] INFO  nextflow.Session - [a4/5de4c4] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (263)
May-11 11:20:57.575 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 692; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (259); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/75/20841fd45f2e7c64fbd8c3ad2a02a5]
May-11 11:20:57.579 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:57.579 [Task submitter] INFO  nextflow.Session - [62/f00926] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (265)
May-11 11:20:57.990 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 693; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (260); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ad/0637bd73fdfc787a369edde3053587]
May-11 11:20:57.992 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:57.992 [Task submitter] INFO  nextflow.Session - [0f/a69ae4] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (264)
May-11 11:20:58.662 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 694; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (261); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/82/c4dc7b488de21d69a35790bc4a83b9]
May-11 11:20:58.666 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:58.666 [Task submitter] INFO  nextflow.Session - [eb/535971] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (267)
May-11 11:20:59.762 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 695; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (262); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/93/d8ed704ab8fc45717e9d47fb6d7f3f]
May-11 11:20:59.765 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:20:59.765 [Task submitter] INFO  nextflow.Session - [7b/926884] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (266)
May-11 11:21:02.417 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 696; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (263); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a4/5de4c458aa5e32b346f0fbe15fe246]
May-11 11:21:02.420 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:02.420 [Task submitter] INFO  nextflow.Session - [32/0d7956] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (268)
May-11 11:21:03.367 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 698; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (265); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/62/f009267f564bb163c87768550b50c0]
May-11 11:21:03.370 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:03.370 [Task submitter] INFO  nextflow.Session - [07/ecfe72] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (269)
May-11 11:21:03.511 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 697; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (264); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0f/a69ae40bc2a29dbb949191cc3e25ff]
May-11 11:21:03.535 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:03.535 [Task submitter] INFO  nextflow.Session - [c8/974db3] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (270)
May-11 11:21:04.269 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 700; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (267); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/eb/53597175df31780e84182f79e5be57]
May-11 11:21:04.272 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:04.272 [Task submitter] INFO  nextflow.Session - [64/5d4e2b] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (275)
May-11 11:21:05.345 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 699; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (266); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7b/926884558b44e3ca6f4301cd5144b5]
May-11 11:21:05.348 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:05.348 [Task submitter] INFO  nextflow.Session - [c8/c07dd2] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (272)
May-11 11:21:08.862 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 702; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (269); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/07/ecfe72f40d962fb445945f9474570a]
May-11 11:21:08.864 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:08.864 [Task submitter] INFO  nextflow.Session - [29/0c727d] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (277)
May-11 11:21:09.069 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 703; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (270); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c8/974db3125ce3288ee927ae30e30a6e]
May-11 11:21:09.071 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:09.072 [Task submitter] INFO  nextflow.Session - [0f/9a43eb] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (276)
May-11 11:21:09.678 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 708; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (275); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/64/5d4e2b886dfc8218f009d0f0fbcf30]
May-11 11:21:09.680 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:09.680 [Task submitter] INFO  nextflow.Session - [d3/bc8598] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (278)
May-11 11:21:10.809 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 705; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (272); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c8/c07dd29dee520a6c5a93bcdcbb5db1]
May-11 11:21:10.811 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:10.812 [Task submitter] INFO  nextflow.Session - [4a/65f84e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (274)
May-11 11:21:10.909 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 701; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (268); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/32/0d7956bcfd55b22d1f9dfcddde91e5]
May-11 11:21:10.912 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:10.912 [Task submitter] INFO  nextflow.Session - [74/11de7c] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (280)
May-11 11:21:14.541 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 710; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (277); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/29/0c727ddc1a968e2ecb7efa24f23010]
May-11 11:21:14.544 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:14.544 [Task submitter] INFO  nextflow.Session - [fa/de9160] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (286)
May-11 11:21:14.684 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 709; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (276); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0f/9a43ebcda8e9f8d1206da473389a36]
May-11 11:21:14.686 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:14.686 [Task submitter] INFO  nextflow.Session - [6a/4269f2] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (287)
May-11 11:21:15.351 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 711; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (278); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d3/bc8598fff817893f41acfc72c75aec]
May-11 11:21:15.353 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:15.354 [Task submitter] INFO  nextflow.Session - [87/7d546a] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (271)
May-11 11:21:16.657 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 707; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (274); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4a/65f84e52b4d9b571610c91f9469064]
May-11 11:21:16.660 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:16.661 [Task submitter] INFO  nextflow.Session - [a1/00eafc] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (283)
May-11 11:21:16.936 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 713; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (280); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/74/11de7cd57720708c6fe8ea3826b94d]
May-11 11:21:16.939 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:16.939 [Task submitter] INFO  nextflow.Session - [5a/73d6f2] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (279)
May-11 11:21:20.766 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 704; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (271); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/87/7d546a978d13deb7805ef47d040ffd]
May-11 11:21:20.769 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:20.769 [Task submitter] INFO  nextflow.Session - [f4/ca7e0e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (288)
May-11 11:21:21.300 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 720; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (287); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6a/4269f2545d27d21fe3d043aa5d8f35]
May-11 11:21:21.303 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:21.303 [Task submitter] INFO  nextflow.Session - [4d/04c765] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (289)
May-11 11:21:21.331 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 719; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (286); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fa/de9160505b6a497255fd5d82cb81f7]
May-11 11:21:21.333 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:21.333 [Task submitter] INFO  nextflow.Session - [5d/6b3630] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (292)
May-11 11:21:22.659 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 716; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (283); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a1/00eafc1d1a73a80917a3aae724a89d]
May-11 11:21:22.662 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:22.662 [Task submitter] INFO  nextflow.Session - [e5/e1750c] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (293)
May-11 11:21:23.282 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 712; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (279); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5a/73d6f21b57fb1fe8504e9ad08121ea]
May-11 11:21:23.285 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:23.285 [Task submitter] INFO  nextflow.Session - [d1/c9e8bb] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (291)
May-11 11:21:27.227 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 721; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (288); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f4/ca7e0eb12ad4393ebdd7aa1973faf0]
May-11 11:21:27.229 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:27.229 [Task submitter] INFO  nextflow.Session - [ad/69f370] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (282)
May-11 11:21:27.772 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 725; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (292); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5d/6b3630f9c92091d3c0b06f0f160705]
May-11 11:21:27.774 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:27.774 [Task submitter] INFO  nextflow.Session - [dd/137546] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (284)
May-11 11:21:28.507 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 722; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (289); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4d/04c765858c5ee8afae1effa6838e3c]
May-11 11:21:28.510 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:28.511 [Task submitter] INFO  nextflow.Session - [20/886166] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (273)
May-11 11:21:29.494 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 726; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (293); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e5/e1750c27e2b6e412142f40a7b92f82]
May-11 11:21:29.497 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:29.497 [Task submitter] INFO  nextflow.Session - [22/f054e9] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (290)
May-11 11:21:30.351 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 724; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (291); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d1/c9e8bbef25f13b59063ffe6f967322]
May-11 11:21:30.354 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:30.354 [Task submitter] INFO  nextflow.Session - [16/f08def] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (281)
May-11 11:21:32.961 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 715; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (282); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ad/69f370107ea8a711ab3c94b8743893]
May-11 11:21:32.964 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:32.964 [Task submitter] INFO  nextflow.Session - [8b/cf279c] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (285)
May-11 11:21:33.657 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 717; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (284); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/dd/13754692fc83485bbf74109c671f2b]
May-11 11:21:33.660 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:33.660 [Task submitter] INFO  nextflow.Session - [ac/60ed63] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (294)
May-11 11:21:33.765 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 706; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (273); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/20/88616667c9866e157adce88f7adfc4]
May-11 11:21:33.768 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:33.768 [Task submitter] INFO  nextflow.Session - [c5/829f44] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (295)
May-11 11:21:36.931 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 723; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (290); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/22/f054e943a7fd4d42feddc5b12c82a7]
May-11 11:21:36.934 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:36.934 [Task submitter] INFO  nextflow.Session - [61/35f035] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (296)
May-11 11:21:37.015 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 714; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (281); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/16/f08defa06471b2532b6f6dabefac70]
May-11 11:21:37.018 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:37.018 [Task submitter] INFO  nextflow.Session - [c8/06c6e0] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (297)
May-11 11:21:39.896 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 727; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (294); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ac/60ed63f8fcdea9c25664db119d5ff4]
May-11 11:21:39.899 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:39.899 [Task submitter] INFO  nextflow.Session - [83/8d52e7] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (298)
May-11 11:21:40.380 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 728; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (295); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c5/829f449a0a5199fa8866a10172ae83]
May-11 11:21:40.383 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:40.383 [Task submitter] INFO  nextflow.Session - [e6/b98919] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (299)
May-11 11:21:44.036 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 730; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (297); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c8/06c6e0ceacb302db0f6c726f25d43e]
May-11 11:21:44.039 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:44.039 [Task submitter] INFO  nextflow.Session - [2c/feeb10] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (300)
May-11 11:21:44.367 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 729; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (296); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/61/35f0350dd47a21f12f21f002c5c1a5]
May-11 11:21:44.370 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:44.370 [Task submitter] INFO  nextflow.Session - [75/8ab815] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (302)
May-11 11:21:46.231 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 732; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (299); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e6/b98919c5ae8a7c26f664ca0b205632]
May-11 11:21:46.233 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:46.233 [Task submitter] INFO  nextflow.Session - [d3/05ae5f] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (301)
May-11 11:21:47.068 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 731; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (298); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/83/8d52e7b57d5ef8dd95215a3c6eec5b]
May-11 11:21:47.071 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:47.071 [Task submitter] INFO  nextflow.Session - [5e/9297a3] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (303)
May-11 11:21:49.471 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 718; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (285); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8b/cf279cf180b678d1d23108e2786b66]
May-11 11:21:49.474 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:49.474 [Task submitter] INFO  nextflow.Session - [2e/34f5b0] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (304)
May-11 11:21:50.328 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 735; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (302); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/75/8ab8151acb72942533b6a0d680507b]
May-11 11:21:50.330 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:50.330 [Task submitter] INFO  nextflow.Session - [ad/7c2c20] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (306)
May-11 11:21:51.253 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 733; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (300); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2c/feeb101a499b61da483e918bbd3cdd]
May-11 11:21:51.255 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:51.255 [Task submitter] INFO  nextflow.Session - [ad/b86b31] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (305)
May-11 11:21:52.188 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 734; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (301); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d3/05ae5f5708ea02e645b13856b3204e]
May-11 11:21:52.191 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:52.191 [Task submitter] INFO  nextflow.Session - [22/9d5605] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (307)
May-11 11:21:54.578 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 736; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (303); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5e/9297a33f32101d8acff83ff7e1d060]
May-11 11:21:54.580 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:54.580 [Task submitter] INFO  nextflow.Session - [5b/506ef7] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (308)
May-11 11:21:55.854 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 737; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (304); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2e/34f5b0e8a2d6e2d0c3176bc40683d1]
May-11 11:21:55.857 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:55.857 [Task submitter] INFO  nextflow.Session - [ac/604290] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (309)
May-11 11:21:58.181 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 738; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (305); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ad/b86b31644a249c167158581a6d995e]
May-11 11:21:58.183 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:58.183 [Task submitter] INFO  nextflow.Session - [b6/b344e3] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (311)
May-11 11:21:58.280 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 739; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (306); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ad/7c2c20687123f8e6280f82d40d8ea1]
May-11 11:21:58.282 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:21:58.282 [Task submitter] INFO  nextflow.Session - [96/8d3a04] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (313)
May-11 11:22:01.127 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 740; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (307); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/22/9d560570189cc7c9b7eb9ab7cc66cb]
May-11 11:22:01.129 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:01.129 [Task submitter] INFO  nextflow.Session - [04/c85f7e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (314)
May-11 11:22:01.320 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 741; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (308); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5b/506ef792873ded92ae218e39d4fd56]
May-11 11:22:01.323 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:01.323 [Task submitter] INFO  nextflow.Session - [c3/cb7ec7] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (312)
May-11 11:22:01.779 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 742; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (309); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ac/6042907e74ecf1599693812caa2c67]
May-11 11:22:01.782 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:01.782 [Task submitter] INFO  nextflow.Session - [ec/3fe299] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (315)
May-11 11:22:05.418 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 746; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (313); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/96/8d3a04fa724627823cc45fdaa32c85]
May-11 11:22:05.420 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:05.420 [Task submitter] INFO  nextflow.Session - [f1/0f811d] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (310)
May-11 11:22:06.251 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 744; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (311); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b6/b344e3a25f42731289094f68ebeed2]
May-11 11:22:06.255 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:06.255 [Task submitter] INFO  nextflow.Session - [70/2f7cc9] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (317)
May-11 11:22:07.410 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 745; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (312); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c3/cb7ec75326d8f907df545550157a63]
May-11 11:22:07.414 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:07.414 [Task submitter] INFO  nextflow.Session - [5f/071c74] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (324)
May-11 11:22:09.098 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 748; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (315); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ec/3fe2993d955c18bac012aca60132c4]
May-11 11:22:09.102 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:09.102 [Task submitter] INFO  nextflow.Session - [17/e9e052] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (318)
May-11 11:22:09.909 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 747; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (314); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/04/c85f7ee17ebe24b5d9343da9004c98]
May-11 11:22:09.915 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:09.915 [Task submitter] INFO  nextflow.Session - [2e/a370d4] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (325)
May-11 11:22:12.913 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 743; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (310); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f1/0f811dccc3c1f6bc9a3b7ba7978792]
May-11 11:22:12.915 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:12.916 [Task submitter] INFO  nextflow.Session - [be/04448e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (316)
May-11 11:22:13.408 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 750; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (317); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/70/2f7cc904b17803d3d37425d57c48c2]
May-11 11:22:13.410 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:13.411 [Task submitter] INFO  nextflow.Session - [93/1bf9e3] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (319)
May-11 11:22:15.271 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 757; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (324); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5f/071c74c8509de3868dc42103562469]
May-11 11:22:15.274 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:15.274 [Task submitter] INFO  nextflow.Session - [94/0d427e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (326)
May-11 11:22:15.470 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 758; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (325); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2e/a370d47059b95a2765fab0ebbc3816]
May-11 11:22:15.473 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:15.473 [Task submitter] INFO  nextflow.Session - [b0/f2552e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (320)
May-11 11:22:17.527 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 751; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (318); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/17/e9e052fcd567c1956b283857715d21]
May-11 11:22:17.530 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:17.530 [Task submitter] INFO  nextflow.Session - [cc/c0ea64] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (322)
May-11 11:22:19.932 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 749; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (316); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/be/04448e5d599354e575cbba076bf183]
May-11 11:22:19.934 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:19.935 [Task submitter] INFO  nextflow.Session - [25/4de481] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (323)
May-11 11:22:20.734 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 759; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (326); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/94/0d427e81f1577e80d57451af534dd7]
May-11 11:22:20.737 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:20.737 [Task submitter] INFO  nextflow.Session - [70/6bfcb6] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (321)
May-11 11:22:20.936 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 752; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (319); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/93/1bf9e34acd5742f813a11e07c61789]
May-11 11:22:20.939 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:20.939 [Task submitter] INFO  nextflow.Session - [c9/d837bd] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (327)
May-11 11:22:22.987 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 753; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (320); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b0/f2552e4bd3c24098a135d46e0dea48]
May-11 11:22:22.989 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:22.989 [Task submitter] INFO  nextflow.Session - [c4/d02c06] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (328)
May-11 11:22:23.843 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 755; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (322); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/cc/c0ea644f1d6c34c6a36bef30f3bd32]
May-11 11:22:23.845 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:23.845 [Task submitter] INFO  nextflow.Session - [86/d887fd] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (329)
May-11 11:22:25.754 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 756; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (323); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/25/4de481ca4be742304c5f48e0fbeaac]
May-11 11:22:25.756 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:25.756 [Task submitter] INFO  nextflow.Session - [5c/f3d6e4] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (330)
May-11 11:22:27.777 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 761; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (328); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c4/d02c06ca7bc876822fa1bb948dfcbd]
May-11 11:22:27.780 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:27.780 [Task submitter] INFO  nextflow.Session - [0a/2ee5ea] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (331)
May-11 11:22:28.185 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 760; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (327); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c9/d837bdb0e13d961f83922205624e21]
May-11 11:22:28.187 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:28.187 [Task submitter] INFO  nextflow.Session - [75/728849] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (332)
May-11 11:22:29.005 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 762; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (329); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/86/d887fdb76b2c8a480af7ffc5a0106f]
May-11 11:22:29.008 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:29.008 [Task submitter] INFO  nextflow.Session - [08/8f011f] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (334)
May-11 11:22:29.036 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 754; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (321); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/70/6bfcb63a1e3b905f9f82611133da29]
May-11 11:22:29.038 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:29.038 [Task submitter] INFO  nextflow.Session - [b2/cecbf8] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (333)
May-11 11:22:31.326 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 763; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (330); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5c/f3d6e43642842fe51f3d27016cd683]
May-11 11:22:31.328 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:31.328 [Task submitter] INFO  nextflow.Session - [ad/1a76ba] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (337)
May-11 11:22:33.632 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 764; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (331); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0a/2ee5ea4a1d64f7d41310ca7f1ed7e1]
May-11 11:22:33.634 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:33.634 [Task submitter] INFO  nextflow.Session - [f1/b1c983] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (335)
May-11 11:22:33.669 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 765; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (332); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/75/728849e9b4548c55efb3b76c358f6d]
May-11 11:22:33.672 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:33.672 [Task submitter] INFO  nextflow.Session - [fb/2859fb] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (336)
May-11 11:22:34.430 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 767; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (334); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/08/8f011f67fee68402c7170696c750fa]
May-11 11:22:34.432 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:34.432 [Task submitter] INFO  nextflow.Session - [3f/c795ff] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (338)
May-11 11:22:34.439 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 766; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (333); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b2/cecbf802836799fc4083cdd22d9b54]
May-11 11:22:34.442 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:34.442 [Task submitter] INFO  nextflow.Session - [2f/ff587a] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (340)
May-11 11:22:36.976 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 770; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (337); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ad/1a76ba3cbfdef299d5e97325c132ce]
May-11 11:22:36.979 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:36.979 [Task submitter] INFO  nextflow.Session - [d0/df13de] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (341)
May-11 11:22:39.451 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 769; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (336); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fb/2859fbe98f501635fa4f71545df0bb]
May-11 11:22:39.453 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:39.454 [Task submitter] INFO  nextflow.Session - [66/a30382] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (342)
May-11 11:22:40.544 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 771; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (338); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3f/c795ff6cf48b7e51d09cd25ac83f1a]
May-11 11:22:40.546 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:40.546 [Task submitter] INFO  nextflow.Session - [67/1bdad9] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (345)
May-11 11:22:41.219 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 768; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (335); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f1/b1c983fcd5269b9f9f887976719290]
May-11 11:22:41.222 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:41.222 [Task submitter] INFO  nextflow.Session - [c9/802e06] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (344)
May-11 11:22:41.736 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 773; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (340); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2f/ff587a606e8a6de11a77d156a8c500]
May-11 11:22:41.739 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:41.739 [Task submitter] INFO  nextflow.Session - [3a/54371c] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (346)
May-11 11:22:42.849 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 774; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (341); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d0/df13de398de442b36fe12ed2dc9cef]
May-11 11:22:42.852 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:42.852 [Task submitter] INFO  nextflow.Session - [df/71ee4d] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (347)
May-11 11:22:45.856 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 775; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (342); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/66/a30382cc07db1e5e620195557b80d7]
May-11 11:22:45.859 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:45.859 [Task submitter] INFO  nextflow.Session - [bb/85da23] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (343)
May-11 11:22:47.459 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 778; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (345); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/67/1bdad9bbb1929f19903368e476cad4]
May-11 11:22:47.461 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:47.461 [Task submitter] INFO  nextflow.Session - [3d/4da923] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (354)
May-11 11:22:47.462 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 777; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (344); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c9/802e06ffb43b1fec1d7f6092e05dc2]
May-11 11:22:47.464 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:47.464 [Task submitter] INFO  nextflow.Session - [a7/d61dfb] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (349)
May-11 11:22:49.240 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 779; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (346); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3a/54371cff973ec66f944e38a8f7c52f]
May-11 11:22:49.243 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:49.243 [Task submitter] INFO  nextflow.Session - [da/c29c84] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (350)
May-11 11:22:49.654 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 780; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (347); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/df/71ee4da06de0a1c9911ac5d9e292f4]
May-11 11:22:49.657 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:49.657 [Task submitter] INFO  nextflow.Session - [15/e67957] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (356)
May-11 11:22:52.415 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 776; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (343); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bb/85da23ee9dd505e8e3a02e6e56b49a]
May-11 11:22:52.418 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:52.418 [Task submitter] INFO  nextflow.Session - [b5/f09516] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (357)
May-11 11:22:54.241 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 782; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (349); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a7/d61dfb5328bcffa530d1d8af028d85]
May-11 11:22:54.243 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:54.243 [Task submitter] INFO  nextflow.Session - [e6/b4fb85] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (351)
May-11 11:22:54.262 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 787; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (354); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3d/4da923d1e34e0c00232876bb82d5d7]
May-11 11:22:54.264 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:54.264 [Task submitter] INFO  nextflow.Session - [93/02d727] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (352)
May-11 11:22:56.268 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 783; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (350); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/da/c29c84a33b97d4b49a001e3939d295]
May-11 11:22:56.270 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:56.270 [Task submitter] INFO  nextflow.Session - [19/3393df] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (339)
May-11 11:22:56.512 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 789; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (356); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/15/e67957030d86ed977de3385e921921]
May-11 11:22:56.515 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:22:56.515 [Task submitter] INFO  nextflow.Session - [3f/0adce5] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (353)
May-11 11:23:00.927 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 785; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (352); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/93/02d7279e5bc5908dd2fb688988d5c7]
May-11 11:23:00.930 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:00.930 [Task submitter] INFO  nextflow.Session - [b5/da57f1] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (358)
May-11 11:23:00.994 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 790; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (357); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b5/f09516d736f19ba56fd40a8091d932]
May-11 11:23:00.996 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:00.996 [Task submitter] INFO  nextflow.Session - [9f/0b46ee] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (360)
May-11 11:23:01.432 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 772; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (339); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/19/3393df09c5d1683f41644d9b8887f4]
May-11 11:23:01.434 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:01.434 [Task submitter] INFO  nextflow.Session - [ac/eeeadc] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (348)
May-11 11:23:01.465 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 784; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (351); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e6/b4fb852f494c80157acea82de996fa]
May-11 11:23:01.468 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:01.468 [Task submitter] INFO  nextflow.Session - [87/5e2194] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (359)
May-11 11:23:03.216 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 786; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (353); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3f/0adce55c9039f690d060e3a829952f]
May-11 11:23:03.218 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:03.218 [Task submitter] INFO  nextflow.Session - [b6/b4f2c5] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (361)
May-11 11:23:07.688 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 793; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (360); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9f/0b46eee25d0b05988d6da030dcc3fa]
May-11 11:23:07.691 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:07.691 [Task submitter] INFO  nextflow.Session - [30/9a9e2b] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (364)
May-11 11:23:08.031 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 791; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (358); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b5/da57f100b04815fe4d8e2cac8c6ce8]
May-11 11:23:08.034 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:08.034 [Task submitter] INFO  nextflow.Session - [0a/4d9fe4] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (363)
May-11 11:23:08.494 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 781; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (348); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ac/eeeadcce961abfaacee61d64dd7dd8]
May-11 11:23:08.496 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:08.496 [Task submitter] INFO  nextflow.Session - [9c/01afd0] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (365)
May-11 11:23:09.589 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 792; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (359); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/87/5e219426adad920de53c408d2d9697]
May-11 11:23:09.592 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:09.592 [Task submitter] INFO  nextflow.Session - [79/0bbe15] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (367)
May-11 11:23:12.107 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 794; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (361); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b6/b4f2c504869dc5d95aba9db58b54da]
May-11 11:23:12.110 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:12.110 [Task submitter] INFO  nextflow.Session - [cc/4a0ced] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (366)
May-11 11:23:14.197 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 797; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (364); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/30/9a9e2bba1e28db5f54b3f8e82be17b]
May-11 11:23:14.200 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:14.200 [Task submitter] INFO  nextflow.Session - [b4/ddf1b9] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (369)
May-11 11:23:14.699 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 796; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (363); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0a/4d9fe47c3956a2da11b1ab4cb37006]
May-11 11:23:14.702 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:14.702 [Task submitter] INFO  nextflow.Session - [6e/f67f49] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (355)
May-11 11:23:16.863 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 800; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (367); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/79/0bbe15b8c7b6f13d452e0e302742a8]
May-11 11:23:16.865 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:16.865 [Task submitter] INFO  nextflow.Session - [24/76fff5] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (370)
May-11 11:23:17.271 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 798; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (365); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9c/01afd01cba4603884e5d77ea95dfba]
May-11 11:23:17.274 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:17.274 [Task submitter] INFO  nextflow.Session - [94/797518] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (372)
May-11 11:23:18.402 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 799; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (366); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/cc/4a0cedbfa64663252f21f198256cb0]
May-11 11:23:18.405 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:18.405 [Task submitter] INFO  nextflow.Session - [5f/05f6a7] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (374)
May-11 11:23:23.833 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 805; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (372); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/94/797518d542193de6137645d43f04cb]
May-11 11:23:23.836 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:23.836 [Task submitter] INFO  nextflow.Session - [db/33bba7] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (368)
May-11 11:23:24.397 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 788; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (355); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6e/f67f499f24cdcbd109b1f975cd7ee4]
May-11 11:23:24.400 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:24.400 [Task submitter] INFO  nextflow.Session - [49/84a0f9] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (375)
May-11 11:23:24.404 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 803; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (370); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/24/76fff5c400e15205b8dfd4d08d78e5]
May-11 11:23:24.407 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:24.407 [Task submitter] INFO  nextflow.Session - [d4/414bd5] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (362)
May-11 11:23:25.199 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 807; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (374); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5f/05f6a752ffbfb7517b3bf1a935c729]
May-11 11:23:25.203 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:25.203 [Task submitter] INFO  nextflow.Session - [39/5ba18b] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (373)
May-11 11:23:29.345 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 802; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (369); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b4/ddf1b97c4c1b98dfd9d118dfb1bde4]
May-11 11:23:29.347 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:29.347 [Task submitter] INFO  nextflow.Session - [a7/58cf65] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (371)
May-11 11:23:30.868 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 795; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (362); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d4/414bd5cbf73ea10c819cf9d4a28f56]
May-11 11:23:30.871 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:30.871 [Task submitter] INFO  nextflow.Session - [8c/3275f5] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (377)
May-11 11:23:31.304 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 808; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (375); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/49/84a0f9cc795f75c72dff7e49b57c99]
May-11 11:23:31.306 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:31.306 [Task submitter] INFO  nextflow.Session - [52/58ab53] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (376)
May-11 11:23:31.817 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 806; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (373); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/39/5ba18bacd2e3d5943af3bc25ee9c03]
May-11 11:23:31.820 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:31.820 [Task submitter] INFO  nextflow.Session - [a0/4ff7fc] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (379)
May-11 11:23:34.342 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 801; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (368); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/db/33bba7e60d8206be43addf41394782]
May-11 11:23:34.344 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:34.344 [Task submitter] INFO  nextflow.Session - [53/a9d11c] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (380)
May-11 11:23:35.779 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 804; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (371); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a7/58cf65091dac2b312e7466ff952e8e]
May-11 11:23:35.782 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:35.782 [Task submitter] INFO  nextflow.Session - [18/d5e45d] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (383)
May-11 11:23:37.081 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 589; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/37/cb8bfbd6f4fe97918c6d10c2f179d4]
~> TaskHandler[id: 810; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (377); status: RUNNING; exit: -; error: -; workDir: Ath_work2/8c/3275f55047a34e461ccdb77aa52be2]
~> TaskHandler[id: 809; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (376); status: RUNNING; exit: -; error: -; workDir: Ath_work2/52/58ab53c38183a05a1e17b5ba90e231]
~> TaskHandler[id: 812; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (379); status: RUNNING; exit: -; error: -; workDir: Ath_work2/a0/4ff7fc69ce44ad134a72d9fd374364]
~> TaskHandler[id: 813; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (380); status: RUNNING; exit: -; error: -; workDir: Ath_work2/53/a9d11c8884f5ef9ded9245e20c43cc]
~> TaskHandler[id: 816; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (383); status: RUNNING; exit: -; error: -; workDir: Ath_work2/18/d5e45da962eebde9cb2e568c177fa5]
May-11 11:23:37.939 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 810; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (377); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8c/3275f55047a34e461ccdb77aa52be2]
May-11 11:23:37.943 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:37.943 [Task submitter] INFO  nextflow.Session - [c1/36af15] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (388)
May-11 11:23:39.269 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 809; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (376); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/52/58ab53c38183a05a1e17b5ba90e231]
May-11 11:23:39.271 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:39.271 [Task submitter] INFO  nextflow.Session - [80/44fd77] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (387)
May-11 11:23:39.682 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 812; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (379); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a0/4ff7fc69ce44ad134a72d9fd374364]
May-11 11:23:39.685 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:39.686 [Task submitter] INFO  nextflow.Session - [68/d99b82] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (378)
May-11 11:23:43.452 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 813; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (380); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/53/a9d11c8884f5ef9ded9245e20c43cc]
May-11 11:23:43.454 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:43.454 [Task submitter] INFO  nextflow.Session - [43/c77b5c] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (384)
May-11 11:23:44.066 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 821; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (388); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c1/36af15d294a869479136389c6f14cb]
May-11 11:23:44.069 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:44.069 [Task submitter] INFO  nextflow.Session - [45/b714d4] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (382)
May-11 11:23:44.465 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 816; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (383); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/18/d5e45da962eebde9cb2e568c177fa5]
May-11 11:23:44.467 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:44.467 [Task submitter] INFO  nextflow.Session - [1f/4acd1e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (381)
May-11 11:23:47.924 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 811; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (378); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/68/d99b820d2699d7eb090faaba691e7d]
May-11 11:23:47.927 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:47.927 [Task submitter] INFO  nextflow.Session - [59/bd445e] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (385)
May-11 11:23:50.691 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 815; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (382); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/45/b714d4ffe2ad15f16fa2992c581d57]
May-11 11:23:50.694 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:50.694 [Task submitter] INFO  nextflow.Session - [3b/bd2999] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (386)
May-11 11:23:52.236 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 814; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (381); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1f/4acd1e3e054c2876e72ddc21f095eb]
May-11 11:23:52.239 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:52.239 [Task submitter] INFO  nextflow.Session - [e0/06e0c9] Submitted process > egapx:rnaseq_short_plane:bam_bin_and_sort:merge (389)
May-11 11:23:53.088 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 817; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (384); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/43/c77b5c89561dacfac906190193a02a]
May-11 11:23:53.090 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:53.090 [Task submitter] INFO  nextflow.Session - [c0/6fc0d9] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (4)
May-11 11:23:54.933 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 818; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (385); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/59/bd445e7e32e70462c0b60536ec64c0]
May-11 11:23:54.934 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:54.935 [Task submitter] INFO  nextflow.Session - [e6/0ac71e] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (3)
May-11 11:23:56.380 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 819; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (386); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3b/bd29992e229f82bf21eb18b7fcad18]
May-11 11:23:56.382 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:56.382 [Task submitter] INFO  nextflow.Session - [16/006165] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (2)
May-11 11:23:58.657 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 822; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (389); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e0/06e0c981588c393064c6eefbfe7c06]
May-11 11:23:58.659 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:23:58.659 [Task submitter] INFO  nextflow.Session - [92/ff0f4f] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (1)
May-11 11:24:08.056 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 826; name: egapx:rnaseq_short_plane:bam2asn:convert (4); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c0/6fc0d9aac0f39ab0e2dd122ed97266]
May-11 11:24:08.057 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:24:08.058 [Task submitter] INFO  nextflow.Session - [9f/2ca998] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (5)
May-11 11:24:10.930 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 825; name: egapx:rnaseq_short_plane:bam2asn:convert (3); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e6/0ac71e341c609d19f25538f121355e]
May-11 11:24:10.932 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:24:10.932 [Task submitter] INFO  nextflow.Session - [69/2f57cb] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (8)
May-11 11:24:19.498 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 830; name: egapx:rnaseq_short_plane:bam2asn:convert (8); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/69/2f57cb20cbfd294aa4cdf5bfb16318]
May-11 11:24:19.499 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:24:19.499 [Task submitter] INFO  nextflow.Session - [c4/d6a10d] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (7)
May-11 11:24:26.723 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 824; name: egapx:rnaseq_short_plane:bam2asn:convert (2); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/16/006165b3528aba0b4e3d283d779fd5]
May-11 11:24:26.726 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:24:26.726 [Task submitter] INFO  nextflow.Session - [33/325469] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (6)
May-11 11:24:30.657 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 823; name: egapx:rnaseq_short_plane:bam2asn:convert (1); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/92/ff0f4f28cf8f0217f6856886f13952]
May-11 11:24:30.660 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:24:30.660 [Task submitter] INFO  nextflow.Session - [6a/0bd13f] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (9)
May-11 11:24:35.472 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 829; name: egapx:rnaseq_short_plane:bam2asn:convert (7); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c4/d6a10dc36ad4c74292032beb26c830]
May-11 11:24:35.474 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:24:35.475 [Task submitter] INFO  nextflow.Session - [d1/23c40e] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (15)
May-11 11:24:40.112 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 837; name: egapx:rnaseq_short_plane:bam2asn:convert (15); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d1/23c40ef2605d315a92d1e50f8f3622]
May-11 11:24:40.113 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:24:40.113 [Task submitter] INFO  nextflow.Session - [47/d8e4db] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (14)
May-11 11:24:44.137 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 836; name: egapx:rnaseq_short_plane:bam2asn:convert (14); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/47/d8e4db093ecaec7484a2e66930aec8]
May-11 11:24:44.139 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:24:44.139 [Task submitter] INFO  nextflow.Session - [f9/569151] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (17)
May-11 11:24:46.684 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 828; name: egapx:rnaseq_short_plane:bam2asn:convert (6); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/33/32546945ecfb540d26a74ba7e375ca]
May-11 11:24:46.686 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:24:46.686 [Task submitter] INFO  nextflow.Session - [fe/b98ff4] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (12)
May-11 11:24:48.167 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 831; name: egapx:rnaseq_short_plane:bam2asn:convert (9); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6a/0bd13f58c28e42ae814f28116b7593]
May-11 11:24:48.169 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:24:48.169 [Task submitter] INFO  nextflow.Session - [51/f45880] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (16)
May-11 11:24:49.010 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 839; name: egapx:rnaseq_short_plane:bam2asn:convert (17); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f9/569151bf177adcd82a9921f9bebc96]
May-11 11:24:49.012 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:24:49.012 [Task submitter] INFO  nextflow.Session - [2a/c612fa] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (11)
May-11 11:24:49.363 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 827; name: egapx:rnaseq_short_plane:bam2asn:convert (5); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9f/2ca998e5ea2b9464e1f485934483d9]
May-11 11:24:49.365 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:24:49.366 [Task submitter] INFO  nextflow.Session - [6d/6ae914] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (13)
May-11 11:24:51.937 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 834; name: egapx:rnaseq_short_plane:bam2asn:convert (12); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fe/b98ff437d38b1c0d794870b5a1c48f]
May-11 11:24:51.939 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:24:51.939 [Task submitter] INFO  nextflow.Session - [5f/8387bf] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (10)
May-11 11:24:53.551 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 838; name: egapx:rnaseq_short_plane:bam2asn:convert (16); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/51/f458800da73e176dbbce67b22b71ac]
May-11 11:24:53.553 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:24:53.553 [Task submitter] INFO  nextflow.Session - [c9/612f20] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (23)
May-11 11:24:54.729 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 833; name: egapx:rnaseq_short_plane:bam2asn:convert (11); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2a/c612fab909a26f9e26964725adb14b]
May-11 11:24:54.730 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:24:54.730 [Task submitter] INFO  nextflow.Session - [cb/1a1d4e] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (18)
May-11 11:24:59.269 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 845; name: egapx:rnaseq_short_plane:bam2asn:convert (23); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c9/612f202785369d6e8d4593b3281b6f]
May-11 11:24:59.270 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:24:59.270 [Task submitter] INFO  nextflow.Session - [d5/7a40e7] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (19)
May-11 11:24:59.742 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 840; name: egapx:rnaseq_short_plane:bam2asn:convert (18); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/cb/1a1d4e8cf08ddb5e241ef39d7809f6]
May-11 11:24:59.743 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:24:59.743 [Task submitter] INFO  nextflow.Session - [da/4bb439] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (26)
May-11 11:25:05.254 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 841; name: egapx:rnaseq_short_plane:bam2asn:convert (19); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d5/7a40e7fc57de1e184e057d2b169ec3]
May-11 11:25:05.255 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:25:05.255 [Task submitter] INFO  nextflow.Session - [9a/fd9cde] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (27)
May-11 11:25:09.117 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 848; name: egapx:rnaseq_short_plane:bam2asn:convert (26); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/da/4bb439bbe27a43973b05fd7d5e6830]
May-11 11:25:09.119 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:25:09.119 [Task submitter] INFO  nextflow.Session - [65/af76b4] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (22)
May-11 11:25:13.772 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 835; name: egapx:rnaseq_short_plane:bam2asn:convert (13); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6d/6ae91421a3492d6ec3e0223f8a836a]
May-11 11:25:13.774 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:25:13.774 [Task submitter] INFO  nextflow.Session - [ed/8a72c6] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (21)
May-11 11:25:15.160 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 849; name: egapx:rnaseq_short_plane:bam2asn:convert (27); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9a/fd9cdea80e69f6c93414b36707fafa]
May-11 11:25:15.162 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:25:15.162 [Task submitter] INFO  nextflow.Session - [23/bb3c4f] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (25)
May-11 11:25:15.168 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 844; name: egapx:rnaseq_short_plane:bam2asn:convert (22); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/65/af76b47e623b0321aa2aedb48ad587]
May-11 11:25:15.170 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:25:15.170 [Task submitter] INFO  nextflow.Session - [ce/694b7a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (28)
May-11 11:25:16.171 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 129 -- tasks to be submitted are shown below
~> TaskHandler[id: 851; name: egapx:rnaseq_short_plane:bam2asn:convert (29); status: NEW; exit: -; error: -; workDir: Ath_work2/13/88e0a0940625e08cd0b4dab3431ea3]
~> TaskHandler[id: 842; name: egapx:rnaseq_short_plane:bam2asn:convert (20); status: NEW; exit: -; error: -; workDir: Ath_work2/ff/788895c0c50155a1532d915b392343]
~> TaskHandler[id: 855; name: egapx:rnaseq_short_plane:bam2asn:convert (33); status: NEW; exit: -; error: -; workDir: Ath_work2/45/7bc616f4f9ccc827583d113533d37c]
~> TaskHandler[id: 853; name: egapx:rnaseq_short_plane:bam2asn:convert (31); status: NEW; exit: -; error: -; workDir: Ath_work2/b7/11abdd73dc8aa538d77434bbd39807]
~> TaskHandler[id: 854; name: egapx:rnaseq_short_plane:bam2asn:convert (32); status: NEW; exit: -; error: -; workDir: Ath_work2/ae/56d56a76e13c49e29970292cd678d8]
~> TaskHandler[id: 861; name: egapx:rnaseq_short_plane:bam2asn:convert (39); status: NEW; exit: -; error: -; workDir: Ath_work2/2e/8796e28e571dd6d7b68e5f2f721456]
~> TaskHandler[id: 852; name: egapx:rnaseq_short_plane:bam2asn:convert (30); status: NEW; exit: -; error: -; workDir: Ath_work2/12/4899db2b927a695992162a9ed2d8fa]
~> TaskHandler[id: 863; name: egapx:rnaseq_short_plane:bam2asn:convert (41); status: NEW; exit: -; error: -; workDir: Ath_work2/04/8c8548886330c16f177658b108064d]
~> TaskHandler[id: 846; name: egapx:rnaseq_short_plane:bam2asn:convert (24); status: NEW; exit: -; error: -; workDir: Ath_work2/dc/042fef5c7ba56ca684105bc83e323c]
~> TaskHandler[id: 873; name: egapx:rnaseq_short_plane:bam2asn:convert (51); status: NEW; exit: -; error: -; workDir: Ath_work2/52/df1b9ede219d56d89c9ec244cb3551]
.. remaining tasks omitted.
May-11 11:25:24.215 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 843; name: egapx:rnaseq_short_plane:bam2asn:convert (21); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ed/8a72c6acffb1494f2871136af85f21]
May-11 11:25:24.217 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:25:24.217 [Task submitter] INFO  nextflow.Session - [13/88e0a0] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (29)
May-11 11:25:29.193 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 850; name: egapx:rnaseq_short_plane:bam2asn:convert (28); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ce/694b7acd40f10d85b399c3f83cfd73]
May-11 11:25:29.194 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:25:29.194 [Task submitter] INFO  nextflow.Session - [ff/788895] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (20)
May-11 11:25:31.394 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 847; name: egapx:rnaseq_short_plane:bam2asn:convert (25); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/23/bb3c4fedf0ec11875e5f6a04bf65d9]
May-11 11:25:31.396 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:25:31.396 [Task submitter] INFO  nextflow.Session - [45/7bc616] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (33)
May-11 11:25:37.056 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 851; name: egapx:rnaseq_short_plane:bam2asn:convert (29); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/13/88e0a0940625e08cd0b4dab3431ea3]
May-11 11:25:37.057 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:25:37.057 [Task submitter] INFO  nextflow.Session - [b7/11abdd] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (31)
May-11 11:25:40.583 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 842; name: egapx:rnaseq_short_plane:bam2asn:convert (20); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ff/788895c0c50155a1532d915b392343]
May-11 11:25:40.584 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:25:40.584 [Task submitter] INFO  nextflow.Session - [ae/56d56a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (32)
May-11 11:25:55.284 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 855; name: egapx:rnaseq_short_plane:bam2asn:convert (33); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/45/7bc616f4f9ccc827583d113533d37c]
May-11 11:25:55.285 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:25:55.285 [Task submitter] INFO  nextflow.Session - [2e/8796e2] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (39)
May-11 11:25:56.739 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 853; name: egapx:rnaseq_short_plane:bam2asn:convert (31); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b7/11abdd73dc8aa538d77434bbd39807]
May-11 11:25:56.741 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:25:56.741 [Task submitter] INFO  nextflow.Session - [12/4899db] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (30)
May-11 11:26:00.498 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 854; name: egapx:rnaseq_short_plane:bam2asn:convert (32); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ae/56d56a76e13c49e29970292cd678d8]
May-11 11:26:00.500 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:26:00.500 [Task submitter] INFO  nextflow.Session - [04/8c8548] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (41)
May-11 11:26:14.766 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 861; name: egapx:rnaseq_short_plane:bam2asn:convert (39); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2e/8796e28e571dd6d7b68e5f2f721456]
May-11 11:26:14.768 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:26:14.768 [Task submitter] INFO  nextflow.Session - [dc/042fef] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (24)
May-11 11:26:18.308 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 863; name: egapx:rnaseq_short_plane:bam2asn:convert (41); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/04/8c8548886330c16f177658b108064d]
May-11 11:26:18.309 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:26:18.309 [Task submitter] INFO  nextflow.Session - [52/df1b9e] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (51)
May-11 11:26:26.211 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 852; name: egapx:rnaseq_short_plane:bam2asn:convert (30); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/12/4899db2b927a695992162a9ed2d8fa]
May-11 11:26:26.212 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:26:26.212 [Task submitter] INFO  nextflow.Session - [e1/1788c3] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (38)
May-11 11:26:39.294 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 873; name: egapx:rnaseq_short_plane:bam2asn:convert (51); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/52/df1b9ede219d56d89c9ec244cb3551]
May-11 11:26:39.296 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:26:39.296 [Task submitter] INFO  nextflow.Session - [11/4bbf3f] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (48)
May-11 11:26:43.319 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 846; name: egapx:rnaseq_short_plane:bam2asn:convert (24); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/dc/042fef5c7ba56ca684105bc83e323c]
May-11 11:26:43.320 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:26:43.320 [Task submitter] INFO  nextflow.Session - [4c/f6df34] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (34)
May-11 11:26:43.685 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 860; name: egapx:rnaseq_short_plane:bam2asn:convert (38); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e1/1788c3a7b88031db54fef9a1c25375]
May-11 11:26:43.687 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:26:43.687 [Task submitter] INFO  nextflow.Session - [dd/5aa30f] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (40)
May-11 11:27:03.252 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 870; name: egapx:rnaseq_short_plane:bam2asn:convert (48); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/11/4bbf3f0b090c4bc40d851c27861ce5]
May-11 11:27:03.254 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:27:03.254 [Task submitter] INFO  nextflow.Session - [d6/b32354] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (43)
May-11 11:27:05.759 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 862; name: egapx:rnaseq_short_plane:bam2asn:convert (40); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/dd/5aa30fc72f79e1d8a84f7903923339]
May-11 11:27:05.761 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:27:05.761 [Task submitter] INFO  nextflow.Session - [8c/a2899f] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (36)
May-11 11:27:06.467 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 856; name: egapx:rnaseq_short_plane:bam2asn:convert (34); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4c/f6df34daeb1175939af10394100231]
May-11 11:27:06.468 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:27:06.468 [Task submitter] INFO  nextflow.Session - [d7/190b08] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (46)
May-11 11:27:28.152 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 865; name: egapx:rnaseq_short_plane:bam2asn:convert (43); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d6/b323546ba3d48ee0c7ca60abddb71e]
May-11 11:27:28.154 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:27:28.154 [Task submitter] INFO  nextflow.Session - [b2/66a237] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (44)
May-11 11:27:32.035 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 868; name: egapx:rnaseq_short_plane:bam2asn:convert (46); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d7/190b08ff69fd2fca7c28c66878576d]
May-11 11:27:32.036 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:27:32.036 [Task submitter] INFO  nextflow.Session - [ed/1c8dd9] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (50)
May-11 11:27:39.087 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 858; name: egapx:rnaseq_short_plane:bam2asn:convert (36); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8c/a2899fa1c9aa780086b5f8d71ad8f2]
May-11 11:27:39.089 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:27:39.089 [Task submitter] INFO  nextflow.Session - [da/89b947] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (47)
May-11 11:27:49.635 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 866; name: egapx:rnaseq_short_plane:bam2asn:convert (44); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b2/66a237de1026f0c5bb409976fa448f]
May-11 11:27:49.637 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:27:49.637 [Task submitter] INFO  nextflow.Session - [32/57bc58] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (35)
May-11 11:27:56.457 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 872; name: egapx:rnaseq_short_plane:bam2asn:convert (50); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ed/1c8dd933e1bdfc4b0ddb2d8ea69545]
May-11 11:27:56.459 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:27:56.459 [Task submitter] INFO  nextflow.Session - [0c/99434d] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (49)
May-11 11:27:56.498 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 869; name: egapx:rnaseq_short_plane:bam2asn:convert (47); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/da/89b9474809a93133e71a6b489ecc92]
May-11 11:27:56.499 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:27:56.499 [Task submitter] INFO  nextflow.Session - [0d/ca398c] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (45)
May-11 11:28:19.264 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 867; name: egapx:rnaseq_short_plane:bam2asn:convert (45); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0d/ca398cbe51512010132c4364ec5907]
May-11 11:28:19.266 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:28:19.266 [Task submitter] INFO  nextflow.Session - [08/7b96f1] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (42)
May-11 11:28:20.700 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 857; name: egapx:rnaseq_short_plane:bam2asn:convert (35); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/32/57bc58bcc08cd211d7e4ede23beac6]
May-11 11:28:20.702 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:28:20.702 [Task submitter] INFO  nextflow.Session - [2a/6fa9ef] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (52)
May-11 11:28:30.794 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 871; name: egapx:rnaseq_short_plane:bam2asn:convert (49); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0c/99434d20eea96c221922935a9e5cd9]
May-11 11:28:30.796 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:28:30.796 [Task submitter] INFO  nextflow.Session - [07/e55469] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (37)
May-11 11:28:37.105 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 589; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/37/cb8bfbd6f4fe97918c6d10c2f179d4]
~> TaskHandler[id: 820; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/80/44fd7792889ba7da824b0d31a05a19]
~> TaskHandler[id: 832; name: egapx:rnaseq_short_plane:bam2asn:convert (10); status: RUNNING; exit: -; error: -; workDir: Ath_work2/5f/8387bf6925cf5888608a49e0c19756]
~> TaskHandler[id: 864; name: egapx:rnaseq_short_plane:bam2asn:convert (42); status: RUNNING; exit: -; error: -; workDir: Ath_work2/08/7b96f1949adf7f9213c48eb1f174ca]
~> TaskHandler[id: 874; name: egapx:rnaseq_short_plane:bam2asn:convert (52); status: RUNNING; exit: -; error: -; workDir: Ath_work2/2a/6fa9ef19c193b735adc0876637b48b]
~> TaskHandler[id: 859; name: egapx:rnaseq_short_plane:bam2asn:convert (37); status: RUNNING; exit: -; error: -; workDir: Ath_work2/07/e554691a16140ca44405f3039f5edc]
May-11 11:28:45.829 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 874; name: egapx:rnaseq_short_plane:bam2asn:convert (52); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2a/6fa9ef19c193b735adc0876637b48b]
May-11 11:28:45.831 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:28:45.831 [Task submitter] INFO  nextflow.Session - [5a/dac4e3] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (66)
May-11 11:28:46.926 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 864; name: egapx:rnaseq_short_plane:bam2asn:convert (42); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/08/7b96f1949adf7f9213c48eb1f174ca]
May-11 11:28:46.928 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:28:46.928 [Task submitter] INFO  nextflow.Session - [00/17ea69] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (57)
May-11 11:29:06.548 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 888; name: egapx:rnaseq_short_plane:bam2asn:convert (66); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5a/dac4e3289167b57902699a128373de]
May-11 11:29:06.549 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:29:06.549 [Task submitter] INFO  nextflow.Session - [a2/6b6d6e] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (54)
May-11 11:29:10.545 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 859; name: egapx:rnaseq_short_plane:bam2asn:convert (37); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/07/e554691a16140ca44405f3039f5edc]
May-11 11:29:10.547 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:29:10.547 [Task submitter] INFO  nextflow.Session - [0d/71ed4f] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (55)
May-11 11:29:13.156 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 879; name: egapx:rnaseq_short_plane:bam2asn:convert (57); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/00/17ea699d4718e67627ecaf2221a2ec]
May-11 11:29:13.158 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:29:13.158 [Task submitter] INFO  nextflow.Session - [14/7c0be6] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (61)
May-11 11:29:31.271 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 876; name: egapx:rnaseq_short_plane:bam2asn:convert (54); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a2/6b6d6e5697087eaa0ff1b6d84e648e]
May-11 11:29:31.272 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:29:31.272 [Task submitter] INFO  nextflow.Session - [46/4547e6] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (56)
May-11 11:29:37.710 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 877; name: egapx:rnaseq_short_plane:bam2asn:convert (55); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0d/71ed4fba5ef866913b31dd0330f97c]
May-11 11:29:37.711 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:29:37.712 [Task submitter] INFO  nextflow.Session - [1e/3d837f] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (59)
May-11 11:29:38.880 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 883; name: egapx:rnaseq_short_plane:bam2asn:convert (61); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/14/7c0be6c66e962b3ceb3d7b5b058db2]
May-11 11:29:38.881 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:29:38.881 [Task submitter] INFO  nextflow.Session - [6c/e6eb34] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (62)
May-11 11:30:01.640 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 878; name: egapx:rnaseq_short_plane:bam2asn:convert (56); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/46/4547e66632f542f377d7763146a806]
May-11 11:30:01.641 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:30:01.642 [Task submitter] INFO  nextflow.Session - [82/45439b] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (58)
May-11 11:30:05.650 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 881; name: egapx:rnaseq_short_plane:bam2asn:convert (59); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1e/3d837f063ff54462a35029395a1ecb]
May-11 11:30:05.652 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:30:05.652 [Task submitter] INFO  nextflow.Session - [64/710a95] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (64)
May-11 11:30:09.132 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 884; name: egapx:rnaseq_short_plane:bam2asn:convert (62); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6c/e6eb349e4be0faff4538c229c954e4]
May-11 11:30:09.134 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:30:09.134 [Task submitter] INFO  nextflow.Session - [22/740ee7] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (63)
May-11 11:30:17.136 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 92 -- tasks to be submitted are shown below
~> TaskHandler[id: 887; name: egapx:rnaseq_short_plane:bam2asn:convert (65); status: NEW; exit: -; error: -; workDir: Ath_work2/73/16bb5a96b37ab4d23fd8b5d8df9b89]
~> TaskHandler[id: 882; name: egapx:rnaseq_short_plane:bam2asn:convert (60); status: NEW; exit: -; error: -; workDir: Ath_work2/79/6c5dbc9ec72e7cc158c1fbdfb5f743]
~> TaskHandler[id: 875; name: egapx:rnaseq_short_plane:bam2asn:convert (53); status: NEW; exit: -; error: -; workDir: Ath_work2/5f/a839a7dedc34232ed378376319036c]
~> TaskHandler[id: 893; name: egapx:rnaseq_short_plane:bam2asn:convert (71); status: NEW; exit: -; error: -; workDir: Ath_work2/ab/9d67a8af2673b46a57ca51a2120312]
~> TaskHandler[id: 896; name: egapx:rnaseq_short_plane:bam2asn:convert (74); status: NEW; exit: -; error: -; workDir: Ath_work2/b2/d890e80b56b3a375ab93db508c17b6]
~> TaskHandler[id: 891; name: egapx:rnaseq_short_plane:bam2asn:convert (69); status: NEW; exit: -; error: -; workDir: Ath_work2/a7/ca74d8a722a201ad311233cf7dd285]
~> TaskHandler[id: 889; name: egapx:rnaseq_short_plane:bam2asn:convert (67); status: NEW; exit: -; error: -; workDir: Ath_work2/3d/927f4d4b6b40429df1f8b206f4ad82]
~> TaskHandler[id: 892; name: egapx:rnaseq_short_plane:bam2asn:convert (70); status: NEW; exit: -; error: -; workDir: Ath_work2/78/7c07becaa0cae979437c33b115e9cf]
~> TaskHandler[id: 895; name: egapx:rnaseq_short_plane:bam2asn:convert (73); status: NEW; exit: -; error: -; workDir: Ath_work2/0c/dc5aa0241fe536a1b6ef90a9ebd41d]
~> TaskHandler[id: 894; name: egapx:rnaseq_short_plane:bam2asn:convert (72); status: NEW; exit: -; error: -; workDir: Ath_work2/2a/82f564cbb5e8623c97e83162d65306]
.. remaining tasks omitted.
May-11 11:30:30.859 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 880; name: egapx:rnaseq_short_plane:bam2asn:convert (58); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/82/45439bbda2d5c2ad9738292efe9e0f]
May-11 11:30:30.860 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:30:30.860 [Task submitter] INFO  nextflow.Session - [73/16bb5a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (65)
May-11 11:30:32.023 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 886; name: egapx:rnaseq_short_plane:bam2asn:convert (64); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/64/710a9552cd2cb237e152cc132af703]
May-11 11:30:32.025 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:30:32.025 [Task submitter] INFO  nextflow.Session - [79/6c5dbc] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (60)
May-11 11:30:38.429 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 885; name: egapx:rnaseq_short_plane:bam2asn:convert (63); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/22/740ee7613cd5e135012320dc09f9a9]
May-11 11:30:38.430 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:30:38.430 [Task submitter] INFO  nextflow.Session - [5f/a839a7] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (53)
May-11 11:31:11.748 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 887; name: egapx:rnaseq_short_plane:bam2asn:convert (65); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/73/16bb5a96b37ab4d23fd8b5d8df9b89]
May-11 11:31:11.750 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:31:11.750 [Task submitter] INFO  nextflow.Session - [ab/9d67a8] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (71)
May-11 11:31:20.090 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 893; name: egapx:rnaseq_short_plane:bam2asn:convert (71); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ab/9d67a8af2673b46a57ca51a2120312]
May-11 11:31:20.092 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:31:20.092 [Task submitter] INFO  nextflow.Session - [b2/d890e8] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (74)
May-11 11:31:32.462 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 882; name: egapx:rnaseq_short_plane:bam2asn:convert (60); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/79/6c5dbc9ec72e7cc158c1fbdfb5f743]
May-11 11:31:32.464 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:31:32.464 [Task submitter] INFO  nextflow.Session - [a7/ca74d8] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (69)
May-11 11:31:40.312 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 896; name: egapx:rnaseq_short_plane:bam2asn:convert (74); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b2/d890e80b56b3a375ab93db508c17b6]
May-11 11:31:40.315 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:31:40.315 [Task submitter] INFO  nextflow.Session - [3d/927f4d] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (67)
May-11 11:31:41.633 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 875; name: egapx:rnaseq_short_plane:bam2asn:convert (53); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5f/a839a7dedc34232ed378376319036c]
May-11 11:31:41.635 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:31:41.635 [Task submitter] INFO  nextflow.Session - [78/7c07be] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (70)
May-11 11:32:01.171 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 891; name: egapx:rnaseq_short_plane:bam2asn:convert (69); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a7/ca74d8a722a201ad311233cf7dd285]
May-11 11:32:01.172 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:32:01.172 [Task submitter] INFO  nextflow.Session - [0c/dc5aa0] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (73)
May-11 11:32:15.726 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 889; name: egapx:rnaseq_short_plane:bam2asn:convert (67); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3d/927f4d4b6b40429df1f8b206f4ad82]
May-11 11:32:15.728 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:32:15.728 [Task submitter] INFO  nextflow.Session - [2a/82f564] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (72)
May-11 11:32:23.015 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 892; name: egapx:rnaseq_short_plane:bam2asn:convert (70); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/78/7c07becaa0cae979437c33b115e9cf]
May-11 11:32:23.016 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:32:23.016 [Task submitter] INFO  nextflow.Session - [3c/9e2870] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (68)
May-11 11:32:42.756 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 895; name: egapx:rnaseq_short_plane:bam2asn:convert (73); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0c/dc5aa0241fe536a1b6ef90a9ebd41d]
May-11 11:32:42.758 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:32:42.758 [Task submitter] INFO  nextflow.Session - [ad/33b34d] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (76)
May-11 11:32:59.351 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 894; name: egapx:rnaseq_short_plane:bam2asn:convert (72); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2a/82f564cbb5e8623c97e83162d65306]
May-11 11:32:59.353 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:32:59.353 [Task submitter] INFO  nextflow.Session - [fe/43d31a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (78)
May-11 11:33:07.518 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 898; name: egapx:rnaseq_short_plane:bam2asn:convert (76); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ad/33b34d28ee23f8be1722df16918655]
May-11 11:33:07.519 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:33:07.519 [Task submitter] INFO  nextflow.Session - [18/82a8ac] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (82)
May-11 11:33:09.096 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 890; name: egapx:rnaseq_short_plane:bam2asn:convert (68); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3c/9e2870376885cae4e18459fc2bcae0]
May-11 11:33:09.098 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:33:09.098 [Task submitter] INFO  nextflow.Session - [c3/fc382b] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (77)
May-11 11:33:13.490 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 832; name: egapx:rnaseq_short_plane:bam2asn:convert (10); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5f/8387bf6925cf5888608a49e0c19756]
May-11 11:33:13.492 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:33:13.492 [Task submitter] INFO  nextflow.Session - [be/7b46d5] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (75)
May-11 11:33:26.139 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 900; name: egapx:rnaseq_short_plane:bam2asn:convert (78); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fe/43d31a266e7066d6ed8102c7290df9]
May-11 11:33:26.141 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:33:26.141 [Task submitter] INFO  nextflow.Session - [b8/de0678] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (79)
May-11 11:33:37.155 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 589; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/37/cb8bfbd6f4fe97918c6d10c2f179d4]
~> TaskHandler[id: 820; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/80/44fd7792889ba7da824b0d31a05a19]
~> TaskHandler[id: 904; name: egapx:rnaseq_short_plane:bam2asn:convert (82); status: RUNNING; exit: -; error: -; workDir: Ath_work2/18/82a8aca76c1f8d7014bdc55329c9c6]
~> TaskHandler[id: 899; name: egapx:rnaseq_short_plane:bam2asn:convert (77); status: RUNNING; exit: -; error: -; workDir: Ath_work2/c3/fc382bfa2853a515cb1dd92d33de53]
~> TaskHandler[id: 897; name: egapx:rnaseq_short_plane:bam2asn:convert (75); status: RUNNING; exit: -; error: -; workDir: Ath_work2/be/7b46d5ec9ecbe49f8da6d8407339e8]
~> TaskHandler[id: 901; name: egapx:rnaseq_short_plane:bam2asn:convert (79); status: RUNNING; exit: -; error: -; workDir: Ath_work2/b8/de0678ab26fc545df8190aa386b2f4]
May-11 11:33:40.598 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 899; name: egapx:rnaseq_short_plane:bam2asn:convert (77); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c3/fc382bfa2853a515cb1dd92d33de53]
May-11 11:33:40.599 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:33:40.599 [Task submitter] INFO  nextflow.Session - [f2/f396f8] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (85)
May-11 11:33:41.597 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 904; name: egapx:rnaseq_short_plane:bam2asn:convert (82); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/18/82a8aca76c1f8d7014bdc55329c9c6]
May-11 11:33:41.599 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:33:41.599 [Task submitter] INFO  nextflow.Session - [ca/e489de] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (81)
May-11 11:33:54.744 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 897; name: egapx:rnaseq_short_plane:bam2asn:convert (75); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/be/7b46d5ec9ecbe49f8da6d8407339e8]
May-11 11:33:54.746 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:33:54.746 [Task submitter] INFO  nextflow.Session - [a7/3ea01c] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (86)
May-11 11:33:55.942 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 901; name: egapx:rnaseq_short_plane:bam2asn:convert (79); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b8/de0678ab26fc545df8190aa386b2f4]
May-11 11:33:55.944 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:33:55.944 [Task submitter] INFO  nextflow.Session - [3a/4067a1] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (83)
May-11 11:34:07.845 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 907; name: egapx:rnaseq_short_plane:bam2asn:convert (85); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f2/f396f8a29a2fdf720a97448636c025]
May-11 11:34:07.847 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:34:07.847 [Task submitter] INFO  nextflow.Session - [c2/b1677c] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (88)
May-11 11:34:18.379 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 903; name: egapx:rnaseq_short_plane:bam2asn:convert (81); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ca/e489dede3a17c9dfdbc37a14d22733]
May-11 11:34:18.381 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:34:18.381 [Task submitter] INFO  nextflow.Session - [ae/a7a66c] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (87)
May-11 11:34:25.894 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 908; name: egapx:rnaseq_short_plane:bam2asn:convert (86); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a7/3ea01c7323cad022d4f6a4ef452269]
May-11 11:34:25.896 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:34:25.896 [Task submitter] INFO  nextflow.Session - [26/e1dad1] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (84)
May-11 11:34:29.696 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 905; name: egapx:rnaseq_short_plane:bam2asn:convert (83); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3a/4067a182d16b773b20b341489eb104]
May-11 11:34:29.698 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:34:29.698 [Task submitter] INFO  nextflow.Session - [a1/537d7b] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (80)
May-11 11:34:40.666 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 910; name: egapx:rnaseq_short_plane:bam2asn:convert (88); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c2/b1677c735ed3d63cb9a9620a832b77]
May-11 11:34:40.668 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:34:40.668 [Task submitter] INFO  nextflow.Session - [11/007d7a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (99)
May-11 11:34:54.860 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 909; name: egapx:rnaseq_short_plane:bam2asn:convert (87); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ae/a7a66c54951f5c1b04c2eb0fe5bb52]
May-11 11:34:54.861 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:34:54.861 [Task submitter] INFO  nextflow.Session - [a2/faf472] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (90)
May-11 11:35:04.444 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 921; name: egapx:rnaseq_short_plane:bam2asn:convert (99); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/11/007d7afbd89a1269615e287c82828c]
May-11 11:35:04.445 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:35:04.445 [Task submitter] INFO  nextflow.Session - [c0/ae7610] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (95)
May-11 11:35:05.849 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 906; name: egapx:rnaseq_short_plane:bam2asn:convert (84); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/26/e1dad1b492ff37cc3162366024680e]
May-11 11:35:05.850 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:35:05.850 [Task submitter] INFO  nextflow.Session - [f9/ad5a68] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (98)
May-11 11:35:17.854 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 63 -- tasks to be submitted are shown below
~> TaskHandler[id: 918; name: egapx:rnaseq_short_plane:bam2asn:convert (96); status: NEW; exit: -; error: -; workDir: Ath_work2/b5/264a598cebd16886a4964053c4854c]
~> TaskHandler[id: 922; name: egapx:rnaseq_short_plane:bam2asn:convert (100); status: NEW; exit: -; error: -; workDir: Ath_work2/9b/96f5942bd42ed1b0619b54c5cbc885]
~> TaskHandler[id: 923; name: egapx:rnaseq_short_plane:bam2asn:convert (101); status: NEW; exit: -; error: -; workDir: Ath_work2/c2/a9c8b71abd7c7949262c0a242ba163]
~> TaskHandler[id: 913; name: egapx:rnaseq_short_plane:bam2asn:convert (91); status: NEW; exit: -; error: -; workDir: Ath_work2/db/1127f018d55dd79d3c4fee7cdb7ed9]
~> TaskHandler[id: 915; name: egapx:rnaseq_short_plane:bam2asn:convert (93); status: NEW; exit: -; error: -; workDir: Ath_work2/22/7d65d740d884d7c4b49d3dffbe881b]
~> TaskHandler[id: 916; name: egapx:rnaseq_short_plane:bam2asn:convert (94); status: NEW; exit: -; error: -; workDir: Ath_work2/d3/ddbc10a10776f6ee339335580697dd]
~> TaskHandler[id: 914; name: egapx:rnaseq_short_plane:bam2asn:convert (92); status: NEW; exit: -; error: -; workDir: Ath_work2/d3/f5565769f18406b60f2d4f37c8ab27]
~> TaskHandler[id: 919; name: egapx:rnaseq_short_plane:bam2asn:convert (97); status: NEW; exit: -; error: -; workDir: Ath_work2/fa/fd8f6c5223535c5bde379b868a73a2]
~> TaskHandler[id: 911; name: egapx:rnaseq_short_plane:bam2asn:convert (89); status: NEW; exit: -; error: -; workDir: Ath_work2/aa/ca18e2a92e7462ca548504c9f892bd]
~> TaskHandler[id: 924; name: egapx:rnaseq_short_plane:bam2asn:convert (102); status: NEW; exit: -; error: -; workDir: Ath_work2/19/8f67e24476184c5cfa7c579f84210a]
.. remaining tasks omitted.
May-11 11:35:18.460 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 912; name: egapx:rnaseq_short_plane:bam2asn:convert (90); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a2/faf472a4a7b29ad9ef9fd01f6ecb73]
May-11 11:35:18.462 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:35:18.462 [Task submitter] INFO  nextflow.Session - [b5/264a59] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (96)
May-11 11:35:19.978 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 902; name: egapx:rnaseq_short_plane:bam2asn:convert (80); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a1/537d7b43568183ab895128c39c7992]
May-11 11:35:19.980 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:35:19.980 [Task submitter] INFO  nextflow.Session - [9b/96f594] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (100)
May-11 11:35:24.174 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 917; name: egapx:rnaseq_short_plane:bam2asn:convert (95); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c0/ae7610a0547e8a90a82157e1045784]
May-11 11:35:24.176 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:35:24.176 [Task submitter] INFO  nextflow.Session - [c2/a9c8b7] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (101)
May-11 11:35:24.692 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 920; name: egapx:rnaseq_short_plane:bam2asn:convert (98); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f9/ad5a68f1f75bdf505db71ffcdb660e]
May-11 11:35:24.693 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:35:24.693 [Task submitter] INFO  nextflow.Session - [db/1127f0] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (91)
May-11 11:35:36.582 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 918; name: egapx:rnaseq_short_plane:bam2asn:convert (96); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b5/264a598cebd16886a4964053c4854c]
May-11 11:35:36.583 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:35:36.583 [Task submitter] INFO  nextflow.Session - [22/7d65d7] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (93)
May-11 11:35:39.896 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 922; name: egapx:rnaseq_short_plane:bam2asn:convert (100); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9b/96f5942bd42ed1b0619b54c5cbc885]
May-11 11:35:39.898 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:35:39.898 [Task submitter] INFO  nextflow.Session - [d3/ddbc10] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (94)
May-11 11:35:48.562 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 913; name: egapx:rnaseq_short_plane:bam2asn:convert (91); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/db/1127f018d55dd79d3c4fee7cdb7ed9]
May-11 11:35:48.563 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:35:48.563 [Task submitter] INFO  nextflow.Session - [d3/f55657] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (92)
May-11 11:35:51.565 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 923; name: egapx:rnaseq_short_plane:bam2asn:convert (101); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c2/a9c8b71abd7c7949262c0a242ba163]
May-11 11:35:51.568 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:35:51.569 [Task submitter] INFO  nextflow.Session - [fa/fd8f6c] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (97)
May-11 11:36:01.747 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 915; name: egapx:rnaseq_short_plane:bam2asn:convert (93); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/22/7d65d740d884d7c4b49d3dffbe881b]
May-11 11:36:01.749 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:36:01.749 [Task submitter] INFO  nextflow.Session - [aa/ca18e2] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (89)
May-11 11:36:05.616 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 916; name: egapx:rnaseq_short_plane:bam2asn:convert (94); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d3/ddbc10a10776f6ee339335580697dd]
May-11 11:36:05.617 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:36:05.617 [Task submitter] INFO  nextflow.Session - [19/8f67e2] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (102)
May-11 11:36:11.949 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 914; name: egapx:rnaseq_short_plane:bam2asn:convert (92); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d3/f5565769f18406b60f2d4f37c8ab27]
May-11 11:36:11.950 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:36:11.950 [Task submitter] INFO  nextflow.Session - [bf/e9714d] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (104)
May-11 11:36:31.294 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 926; name: egapx:rnaseq_short_plane:bam2asn:convert (104); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bf/e9714d095d6fea4b691f0e569a3e18]
May-11 11:36:31.296 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:36:31.296 [Task submitter] INFO  nextflow.Session - [13/1e5f8a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (103)
May-11 11:36:31.513 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 924; name: egapx:rnaseq_short_plane:bam2asn:convert (102); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/19/8f67e24476184c5cfa7c579f84210a]
May-11 11:36:31.515 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:36:31.515 [Task submitter] INFO  nextflow.Session - [e3/af8e1c] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (106)
May-11 11:36:36.766 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 919; name: egapx:rnaseq_short_plane:bam2asn:convert (97); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fa/fd8f6c5223535c5bde379b868a73a2]
May-11 11:36:36.768 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:36:36.768 [Task submitter] INFO  nextflow.Session - [87/c6b393] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (105)
May-11 11:36:44.044 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 928; name: egapx:rnaseq_short_plane:bam2asn:convert (106); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e3/af8e1c80c93338141ffcc75e901481]
May-11 11:36:44.045 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:36:44.045 [Task submitter] INFO  nextflow.Session - [7d/e3d7d0] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (107)
May-11 11:36:50.650 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 911; name: egapx:rnaseq_short_plane:bam2asn:convert (89); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/aa/ca18e2a92e7462ca548504c9f892bd]
May-11 11:36:50.653 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:36:50.653 [Task submitter] INFO  nextflow.Session - [95/67df73] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (109)
May-11 11:36:56.385 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 931; name: egapx:rnaseq_short_plane:bam2asn:convert (109); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/95/67df7319beb00bd8c132ad52d80789]
May-11 11:36:56.386 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:36:56.386 [Task submitter] INFO  nextflow.Session - [0f/0e702b] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (108)
May-11 11:36:56.889 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 929; name: egapx:rnaseq_short_plane:bam2asn:convert (107); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7d/e3d7d0aac84f8d0d6a2722e325d740]
May-11 11:36:56.890 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:36:56.890 [Task submitter] INFO  nextflow.Session - [f4/56eee6] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (115)
May-11 11:36:59.134 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 927; name: egapx:rnaseq_short_plane:bam2asn:convert (105); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/87/c6b393776865bca824dccaf26a9d65]
May-11 11:36:59.149 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:36:59.150 [Task submitter] INFO  nextflow.Session - [b9/09c1ad] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (111)
May-11 11:37:02.634 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 937; name: egapx:rnaseq_short_plane:bam2asn:convert (115); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f4/56eee68bcb5529b1ac6cc671b050e3]
May-11 11:37:02.636 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:02.636 [Task submitter] INFO  nextflow.Session - [1a/bc0feb] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (119)
May-11 11:37:05.617 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 930; name: egapx:rnaseq_short_plane:bam2asn:convert (108); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0f/0e702b39100960ba3c38b06c401966]
May-11 11:37:05.619 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:05.619 [Task submitter] INFO  nextflow.Session - [82/d49b5a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (118)
May-11 11:37:05.750 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 933; name: egapx:rnaseq_short_plane:bam2asn:convert (111); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b9/09c1ad79ca24192927b32028963d76]
May-11 11:37:05.752 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:05.752 [Task submitter] INFO  nextflow.Session - [86/8bd1bb] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (117)
May-11 11:37:08.203 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 941; name: egapx:rnaseq_short_plane:bam2asn:convert (119); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1a/bc0feb4b2524b585a99dfcd64c5506]
May-11 11:37:08.205 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:08.205 [Task submitter] INFO  nextflow.Session - [d6/4b010a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (123)
May-11 11:37:10.435 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 940; name: egapx:rnaseq_short_plane:bam2asn:convert (118); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/82/d49b5a690461f3bcd5d673008b32a1]
May-11 11:37:10.436 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 939; name: egapx:rnaseq_short_plane:bam2asn:convert (117); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/86/8bd1bb465af6b4fb9eaed88766c39c]
May-11 11:37:10.436 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:10.436 [Task submitter] INFO  nextflow.Session - [c3/1f7e47] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (120)
May-11 11:37:10.438 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:10.438 [Task submitter] INFO  nextflow.Session - [67/320c5c] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (110)
May-11 11:37:13.690 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 925; name: egapx:rnaseq_short_plane:bam2asn:convert (103); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/13/1e5f8a9f0c109d922ad8e963984a54]
May-11 11:37:13.691 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:13.691 [Task submitter] INFO  nextflow.Session - [d0/d77863] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (122)
May-11 11:37:14.523 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 945; name: egapx:rnaseq_short_plane:bam2asn:convert (123); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d6/4b010acb50ca55e1996e058d7b3a1e]
May-11 11:37:14.524 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:14.524 [Task submitter] INFO  nextflow.Session - [df/413f8c] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (114)
May-11 11:37:15.460 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 942; name: egapx:rnaseq_short_plane:bam2asn:convert (120); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c3/1f7e47b4a5df48f0d56a7f3cca7b96]
May-11 11:37:15.462 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:15.462 [Task submitter] INFO  nextflow.Session - [31/7bd9a9] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (121)
May-11 11:37:18.783 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 944; name: egapx:rnaseq_short_plane:bam2asn:convert (122); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d0/d778637c01f8fe2d49a966459629db]
May-11 11:37:18.785 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:18.785 [Task submitter] INFO  nextflow.Session - [1b/2f0b88] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (116)
May-11 11:37:20.189 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 943; name: egapx:rnaseq_short_plane:bam2asn:convert (121); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/31/7bd9a9e4f033b866141a2e5f0bdfb2]
May-11 11:37:20.191 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:20.191 [Task submitter] INFO  nextflow.Session - [fb/623ec8] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (113)
May-11 11:37:20.198 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 936; name: egapx:rnaseq_short_plane:bam2asn:convert (114); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/df/413f8ce504eb0621837e716ee9eeec]
May-11 11:37:20.199 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:20.199 [Task submitter] INFO  nextflow.Session - [d0/2cad21] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (112)
May-11 11:37:24.009 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 932; name: egapx:rnaseq_short_plane:bam2asn:convert (110); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/67/320c5c23bab17427a55efcfffd5bbf]
May-11 11:37:24.011 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:24.011 [Task submitter] INFO  nextflow.Session - [e8/11d464] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (125)
May-11 11:37:29.368 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 947; name: egapx:rnaseq_short_plane:bam2asn:convert (125); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e8/11d464cb372550470170d2d8f1b2ff]
May-11 11:37:29.370 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:29.370 [Task submitter] INFO  nextflow.Session - [fb/a04229] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (128)
May-11 11:37:35.106 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 950; name: egapx:rnaseq_short_plane:bam2asn:convert (128); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fb/a04229d0a84c1483477d14738a8485]
May-11 11:37:35.109 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:35.109 [Task submitter] INFO  nextflow.Session - [e1/3e01e4] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (127)
May-11 11:37:40.405 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 949; name: egapx:rnaseq_short_plane:bam2asn:convert (127); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e1/3e01e409a48bb5422dfe98dbe5dcff]
May-11 11:37:40.408 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:40.408 [Task submitter] INFO  nextflow.Session - [b2/481ddc] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (126)
May-11 11:37:41.119 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 938; name: egapx:rnaseq_short_plane:bam2asn:convert (116); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1b/2f0b88ac8d57c4d5a7620289da9ed2]
May-11 11:37:41.121 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:41.121 [Task submitter] INFO  nextflow.Session - [92/e1ab83] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (129)
May-11 11:37:41.607 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 935; name: egapx:rnaseq_short_plane:bam2asn:convert (113); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fb/623ec8066ff86fbb804c4d29f045b0]
May-11 11:37:41.609 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:41.609 [Task submitter] INFO  nextflow.Session - [77/33fead] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (124)
May-11 11:37:41.876 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 589; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (156); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/37/cb8bfbd6f4fe97918c6d10c2f179d4]
May-11 11:37:41.878 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:41.878 [Task submitter] INFO  nextflow.Session - [08/d77241] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (130)
May-11 11:37:49.031 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 948; name: egapx:rnaseq_short_plane:bam2asn:convert (126); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b2/481ddc27c54128f0a329c37a0808d1]
May-11 11:37:49.033 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:49.033 [Task submitter] INFO  nextflow.Session - [e5/5c69b7] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (131)
May-11 11:37:51.421 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 951; name: egapx:rnaseq_short_plane:bam2asn:convert (129); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/92/e1ab83e6dd338bc219533c42262312]
May-11 11:37:51.423 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:51.423 [Task submitter] INFO  nextflow.Session - [4a/ff29dd] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (133)
May-11 11:37:52.151 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 952; name: egapx:rnaseq_short_plane:bam2asn:convert (130); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/08/d772410671ae44ec694030e183dbf0]
May-11 11:37:52.154 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:52.154 [Task submitter] INFO  nextflow.Session - [0f/bce205] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (132)
May-11 11:37:53.267 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 934; name: egapx:rnaseq_short_plane:bam2asn:convert (112); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d0/2cad21ff5d2b70310465c114b783a2]
May-11 11:37:53.269 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:37:53.269 [Task submitter] INFO  nextflow.Session - [d3/0cabed] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (134)
May-11 11:38:04.810 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 954; name: egapx:rnaseq_short_plane:bam2asn:convert (132); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0f/bce2051fe6594dd4708f780c5152f2]
May-11 11:38:04.812 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:38:04.812 [Task submitter] INFO  nextflow.Session - [06/9bc5da] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (135)
May-11 11:38:06.257 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 955; name: egapx:rnaseq_short_plane:bam2asn:convert (133); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4a/ff29dd9246ab145326ec04267f026f]
May-11 11:38:06.259 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:38:06.259 [Task submitter] INFO  nextflow.Session - [c7/d54eaf] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (140)
May-11 11:38:10.818 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 956; name: egapx:rnaseq_short_plane:bam2asn:convert (134); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d3/0cabedc0cdb341ec040fef62bdd39f]
May-11 11:38:10.819 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:38:10.819 [Task submitter] INFO  nextflow.Session - [a8/6cfc62] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (139)
May-11 11:38:11.482 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 953; name: egapx:rnaseq_short_plane:bam2asn:convert (131); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e5/5c69b7818f95eebda63d683aa45c41]
May-11 11:38:11.484 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:38:11.484 [Task submitter] INFO  nextflow.Session - [db/34d554] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (138)
May-11 11:38:22.185 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 962; name: egapx:rnaseq_short_plane:bam2asn:convert (140); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c7/d54eafba88f70c768100802b8b82e1]
May-11 11:38:22.186 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:38:22.186 [Task submitter] INFO  nextflow.Session - [6e/8851ff] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (136)
May-11 11:38:28.682 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 957; name: egapx:rnaseq_short_plane:bam2asn:convert (135); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/06/9bc5da8c7e046ec9219646c75261ea]
May-11 11:38:28.684 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:38:28.684 [Task submitter] INFO  nextflow.Session - [bf/37ddc4] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (141)
May-11 11:38:34.012 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 961; name: egapx:rnaseq_short_plane:bam2asn:convert (139); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a8/6cfc623264ba33ccd37d6e6b183068]
May-11 11:38:34.014 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:38:34.014 [Task submitter] INFO  nextflow.Session - [39/d0b1e6] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (142)
May-11 11:38:35.213 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 946; name: egapx:rnaseq_short_plane:bam2asn:convert (124); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/77/33fead0c781d8b38c97046ddfc0c9d]
May-11 11:38:35.226 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:38:35.226 [Task submitter] INFO  nextflow.Session - [17/b657e0] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (137)
May-11 11:38:37.216 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 820; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/80/44fd7792889ba7da824b0d31a05a19]
~> TaskHandler[id: 960; name: egapx:rnaseq_short_plane:bam2asn:convert (138); status: RUNNING; exit: -; error: -; workDir: Ath_work2/db/34d554531530a64fb33c7f6c5257a6]
~> TaskHandler[id: 958; name: egapx:rnaseq_short_plane:bam2asn:convert (136); status: RUNNING; exit: -; error: -; workDir: Ath_work2/6e/8851ffc9c49f5da0744d648fb5f9c2]
~> TaskHandler[id: 963; name: egapx:rnaseq_short_plane:bam2asn:convert (141); status: RUNNING; exit: -; error: -; workDir: Ath_work2/bf/37ddc4738493aef4fd0afd9aa1be48]
~> TaskHandler[id: 964; name: egapx:rnaseq_short_plane:bam2asn:convert (142); status: RUNNING; exit: -; error: -; workDir: Ath_work2/39/d0b1e6e0fd95d8ff207a8051dd0588]
~> TaskHandler[id: 959; name: egapx:rnaseq_short_plane:bam2asn:convert (137); status: RUNNING; exit: -; error: -; workDir: Ath_work2/17/b657e0cc7726529c1faf726844c5ab]
May-11 11:38:39.176 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 960; name: egapx:rnaseq_short_plane:bam2asn:convert (138); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/db/34d554531530a64fb33c7f6c5257a6]
May-11 11:38:39.178 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:38:39.178 [Task submitter] INFO  nextflow.Session - [c0/fe55eb] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (144)
May-11 11:38:54.176 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 958; name: egapx:rnaseq_short_plane:bam2asn:convert (136); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6e/8851ffc9c49f5da0744d648fb5f9c2]
May-11 11:38:54.178 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:38:54.178 [Task submitter] INFO  nextflow.Session - [9e/8fd827] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (143)
May-11 11:38:58.506 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 963; name: egapx:rnaseq_short_plane:bam2asn:convert (141); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bf/37ddc4738493aef4fd0afd9aa1be48]
May-11 11:38:58.508 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:38:58.508 [Task submitter] INFO  nextflow.Session - [6e/e0d6c2] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (146)
May-11 11:39:05.538 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 964; name: egapx:rnaseq_short_plane:bam2asn:convert (142); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/39/d0b1e6e0fd95d8ff207a8051dd0588]
May-11 11:39:05.539 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:39:05.539 [Task submitter] INFO  nextflow.Session - [5f/02b4fa] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (147)
May-11 11:39:11.127 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 966; name: egapx:rnaseq_short_plane:bam2asn:convert (144); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c0/fe55eb7f477b4e7846a53d28dd8c8f]
May-11 11:39:11.128 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:39:11.128 [Task submitter] INFO  nextflow.Session - [81/d5750c] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (145)
May-11 11:39:16.253 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 959; name: egapx:rnaseq_short_plane:bam2asn:convert (137); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/17/b657e0cc7726529c1faf726844c5ab]
May-11 11:39:16.254 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:39:16.254 [Task submitter] INFO  nextflow.Session - [7c/45e9bf] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (148)
May-11 11:39:17.515 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 968; name: egapx:rnaseq_short_plane:bam2asn:convert (146); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6e/e0d6c2ee38e3b7acdf2fbe790cb5af]
May-11 11:39:17.516 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:39:17.516 [Task submitter] INFO  nextflow.Session - [6d/812304] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (149)
May-11 11:39:32.332 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 965; name: egapx:rnaseq_short_plane:bam2asn:convert (143); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9e/8fd8270d71685916341d181fa8c27e]
May-11 11:39:32.334 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:39:32.334 [Task submitter] INFO  nextflow.Session - [4b/41ba49] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (150)
May-11 11:39:39.465 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 969; name: egapx:rnaseq_short_plane:bam2asn:convert (147); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5f/02b4fa1af0f8b912bf833fb5561f27]
May-11 11:39:39.467 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:39:39.467 [Task submitter] INFO  nextflow.Session - [e8/320772] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (151)
May-11 11:39:42.723 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 971; name: egapx:rnaseq_short_plane:bam2asn:convert (149); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6d/812304fe9cf9ae26b0a28b4c260372]
May-11 11:39:42.725 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:39:42.725 [Task submitter] INFO  nextflow.Session - [3c/572376] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (152)
May-11 11:39:52.589 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 967; name: egapx:rnaseq_short_plane:bam2asn:convert (145); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/81/d5750cac040dfdf666815bd8ebea49]
May-11 11:39:52.592 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:39:52.592 [Task submitter] INFO  nextflow.Session - [64/08bec4] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (154)
May-11 11:39:54.713 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 972; name: egapx:rnaseq_short_plane:bam2asn:convert (150); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4b/41ba49b0b830d2cdaf644e6a9f7c3c]
May-11 11:39:54.714 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:39:54.714 [Task submitter] INFO  nextflow.Session - [13/f45d9e] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (153)
May-11 11:39:56.308 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 970; name: egapx:rnaseq_short_plane:bam2asn:convert (148); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7c/45e9bf3b70ddc593081086135c1c7a]
May-11 11:39:56.309 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:39:56.309 [Task submitter] INFO  nextflow.Session - [38/379a60] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (155)
May-11 11:40:02.085 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 973; name: egapx:rnaseq_short_plane:bam2asn:convert (151); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e8/320772ea8249246175ee52f4a5ab64]
May-11 11:40:02.087 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:02.087 [Task submitter] INFO  nextflow.Session - [16/bea98e] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (174)
May-11 11:40:06.602 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 996; name: egapx:rnaseq_short_plane:bam2asn:convert (174); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/16/bea98e0d46a482c5cd3ac756132ab1]
May-11 11:40:06.604 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:06.604 [Task submitter] INFO  nextflow.Session - [52/2e8057] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (173)
May-11 11:40:10.594 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 995; name: egapx:rnaseq_short_plane:bam2asn:convert (173); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/52/2e8057b257558ab76ed74e2b1e0aea]
May-11 11:40:10.597 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:10.597 [Task submitter] INFO  nextflow.Session - [77/d9c657] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (177)
May-11 11:40:12.582 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 974; name: egapx:rnaseq_short_plane:bam2asn:convert (152); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3c/5723760f28352e8926e24a2da38e78]
May-11 11:40:12.583 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:12.583 [Task submitter] INFO  nextflow.Session - [c1/087819] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (170)
May-11 11:40:15.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 999; name: egapx:rnaseq_short_plane:bam2asn:convert (177); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/77/d9c6578b68328e03538337a1435a3a]
May-11 11:40:15.110 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:15.110 [Task submitter] INFO  nextflow.Session - [2c/095380] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (172)
May-11 11:40:17.823 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 992; name: egapx:rnaseq_short_plane:bam2asn:convert (170); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c1/087819508257a7cecbbefac111b94e]
May-11 11:40:17.825 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:17.825 [Task submitter] INFO  nextflow.Session - [bb/04026b] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (175)
May-11 11:40:18.826 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 225 -- tasks to be submitted are shown below
~> TaskHandler[id: 988; name: egapx:rnaseq_short_plane:bam2asn:convert (166); status: NEW; exit: -; error: -; workDir: Ath_work2/ad/113cd1de42099525dd06ad6da69bbe]
~> TaskHandler[id: 989; name: egapx:rnaseq_short_plane:bam2asn:convert (167); status: NEW; exit: -; error: -; workDir: Ath_work2/a0/2e5d84717053ab5ec27a98ef68939e]
~> TaskHandler[id: 985; name: egapx:rnaseq_short_plane:bam2asn:convert (163); status: NEW; exit: -; error: -; workDir: Ath_work2/03/1b29b39dde6c6fabb44f0d46a630cf]
~> TaskHandler[id: 984; name: egapx:rnaseq_short_plane:bam2asn:convert (162); status: NEW; exit: -; error: -; workDir: Ath_work2/e9/78c5946f82a0360303a4ef6f87525f]
~> TaskHandler[id: 991; name: egapx:rnaseq_short_plane:bam2asn:convert (169); status: NEW; exit: -; error: -; workDir: Ath_work2/72/ac9c4a91bb427428862fa162bea6d5]
~> TaskHandler[id: 993; name: egapx:rnaseq_short_plane:bam2asn:convert (171); status: NEW; exit: -; error: -; workDir: Ath_work2/da/2cecfac80fe249f5710875bd4271a8]
~> TaskHandler[id: 998; name: egapx:rnaseq_short_plane:bam2asn:convert (176); status: NEW; exit: -; error: -; workDir: Ath_work2/f5/1586436090a823c8d1728f042bb0ba]
~> TaskHandler[id: 1000; name: egapx:rnaseq_short_plane:bam2asn:convert (178); status: NEW; exit: -; error: -; workDir: Ath_work2/da/252e8e398d3364e3797e05d5aefe4f]
~> TaskHandler[id: 1002; name: egapx:rnaseq_short_plane:bam2asn:convert (180); status: NEW; exit: -; error: -; workDir: Ath_work2/0c/35f89e43f700964aa0095341184fb5]
~> TaskHandler[id: 1003; name: egapx:rnaseq_short_plane:bam2asn:convert (181); status: NEW; exit: -; error: -; workDir: Ath_work2/b5/c4f3c7cbcd514077228227c2f12453]
.. remaining tasks omitted.
May-11 11:40:20.394 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 994; name: egapx:rnaseq_short_plane:bam2asn:convert (172); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2c/0953807a6e7ee333c4b3220667a39c]
May-11 11:40:20.395 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:20.395 [Task submitter] INFO  nextflow.Session - [ad/113cd1] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (166)
May-11 11:40:21.157 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 977; name: egapx:rnaseq_short_plane:bam2asn:convert (155); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/38/379a60633e07280b93f79caefc8faa]
May-11 11:40:21.159 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:21.159 [Task submitter] INFO  nextflow.Session - [a0/2e5d84] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (167)
May-11 11:40:22.504 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 997; name: egapx:rnaseq_short_plane:bam2asn:convert (175); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bb/04026b83c775accfa3f61d320d17b6]
May-11 11:40:22.506 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:22.506 [Task submitter] INFO  nextflow.Session - [03/1b29b3] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (163)
May-11 11:40:26.117 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 989; name: egapx:rnaseq_short_plane:bam2asn:convert (167); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a0/2e5d84717053ab5ec27a98ef68939e]
May-11 11:40:26.119 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:26.119 [Task submitter] INFO  nextflow.Session - [e9/78c594] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (162)
May-11 11:40:27.376 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 988; name: egapx:rnaseq_short_plane:bam2asn:convert (166); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ad/113cd1de42099525dd06ad6da69bbe]
May-11 11:40:27.377 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:27.377 [Task submitter] INFO  nextflow.Session - [72/ac9c4a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (169)
May-11 11:40:29.110 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 976; name: egapx:rnaseq_short_plane:bam2asn:convert (154); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/64/08bec4b770a2343089b2dfbcd5a2a6]
May-11 11:40:29.112 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:29.112 [Task submitter] INFO  nextflow.Session - [da/2cecfa] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (171)
May-11 11:40:31.513 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 985; name: egapx:rnaseq_short_plane:bam2asn:convert (163); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/03/1b29b39dde6c6fabb44f0d46a630cf]
May-11 11:40:31.514 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:31.514 [Task submitter] INFO  nextflow.Session - [f5/158643] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (176)
May-11 11:40:33.450 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 984; name: egapx:rnaseq_short_plane:bam2asn:convert (162); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e9/78c5946f82a0360303a4ef6f87525f]
May-11 11:40:33.451 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:33.451 [Task submitter] INFO  nextflow.Session - [da/252e8e] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (178)
May-11 11:40:33.679 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 993; name: egapx:rnaseq_short_plane:bam2asn:convert (171); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/da/2cecfac80fe249f5710875bd4271a8]
May-11 11:40:33.680 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:33.680 [Task submitter] INFO  nextflow.Session - [0c/35f89e] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (180)
May-11 11:40:33.701 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 991; name: egapx:rnaseq_short_plane:bam2asn:convert (169); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/72/ac9c4a91bb427428862fa162bea6d5]
May-11 11:40:33.703 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:33.703 [Task submitter] INFO  nextflow.Session - [b5/c4f3c7] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (181)
May-11 11:40:37.175 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 998; name: egapx:rnaseq_short_plane:bam2asn:convert (176); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f5/1586436090a823c8d1728f042bb0ba]
May-11 11:40:37.176 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:37.176 [Task submitter] INFO  nextflow.Session - [d7/7bf62c] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (182)
May-11 11:40:37.469 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 975; name: egapx:rnaseq_short_plane:bam2asn:convert (153); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/13/f45d9ebe9cf7cdbf8db9739ef80eac]
May-11 11:40:37.470 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:37.470 [Task submitter] INFO  nextflow.Session - [17/b14f98] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (159)
May-11 11:40:39.843 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1000; name: egapx:rnaseq_short_plane:bam2asn:convert (178); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/da/252e8e398d3364e3797e05d5aefe4f]
May-11 11:40:39.844 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:39.844 [Task submitter] INFO  nextflow.Session - [95/0bb916] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (183)
May-11 11:40:40.231 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1003; name: egapx:rnaseq_short_plane:bam2asn:convert (181); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b5/c4f3c7cbcd514077228227c2f12453]
May-11 11:40:40.233 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:40.233 [Task submitter] INFO  nextflow.Session - [6c/8265cf] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (188)
May-11 11:40:41.071 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1002; name: egapx:rnaseq_short_plane:bam2asn:convert (180); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0c/35f89e43f700964aa0095341184fb5]
May-11 11:40:41.073 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:41.073 [Task submitter] INFO  nextflow.Session - [03/e988b7] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (187)
May-11 11:40:44.454 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1004; name: egapx:rnaseq_short_plane:bam2asn:convert (182); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d7/7bf62c974f1c52169812f07f9331ac]
May-11 11:40:44.456 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:44.456 [Task submitter] INFO  nextflow.Session - [d6/5413b1] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (164)
May-11 11:40:51.033 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1005; name: egapx:rnaseq_short_plane:bam2asn:convert (183); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/95/0bb916cdffcbe1fa39b42693a4a61a]
May-11 11:40:51.034 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:51.034 [Task submitter] INFO  nextflow.Session - [cd/61f55b] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (157)
May-11 11:40:57.362 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1010; name: egapx:rnaseq_short_plane:bam2asn:convert (188); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6c/8265cff4df94c387b6f872f7afdbb8]
May-11 11:40:57.364 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:57.364 [Task submitter] INFO  nextflow.Session - [5a/dfa939] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (185)
May-11 11:40:58.948 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1009; name: egapx:rnaseq_short_plane:bam2asn:convert (187); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/03/e988b7d445aea496497f203b842b54]
May-11 11:40:58.949 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:58.950 [Task submitter] INFO  nextflow.Session - [34/255d0e] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (184)
May-11 11:40:59.710 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 981; name: egapx:rnaseq_short_plane:bam2asn:convert (159); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/17/b14f98fef59378f0a89507e26c5f61]
May-11 11:40:59.712 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:40:59.712 [Task submitter] INFO  nextflow.Session - [6a/3f2405] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (165)
May-11 11:41:08.213 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 986; name: egapx:rnaseq_short_plane:bam2asn:convert (164); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d6/5413b1f6141d33679cae73cd90da07]
May-11 11:41:08.215 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:41:08.215 [Task submitter] INFO  nextflow.Session - [80/e3754a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (194)
May-11 11:41:13.163 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1007; name: egapx:rnaseq_short_plane:bam2asn:convert (185); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5a/dfa93937844b2fc4b07eb41d362a07]
May-11 11:41:13.164 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:41:13.164 [Task submitter] INFO  nextflow.Session - [5f/ad19da] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (191)
May-11 11:41:16.026 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 979; name: egapx:rnaseq_short_plane:bam2asn:convert (157); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/cd/61f55b50560459ef5f7b22c46da084]
May-11 11:41:16.028 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:41:16.028 [Task submitter] INFO  nextflow.Session - [16/aa64d3] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (190)
May-11 11:41:16.930 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1006; name: egapx:rnaseq_short_plane:bam2asn:convert (184); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/34/255d0e771407bb6080d6844955e3ff]
May-11 11:41:16.931 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:41:16.931 [Task submitter] INFO  nextflow.Session - [ef/e7b414] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (200)
May-11 11:41:25.436 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 987; name: egapx:rnaseq_short_plane:bam2asn:convert (165); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6a/3f2405aa9f4cb6d7bf6d116938fe7c]
May-11 11:41:25.438 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:41:25.438 [Task submitter] INFO  nextflow.Session - [93/31a12a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (204)
May-11 11:41:26.960 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1016; name: egapx:rnaseq_short_plane:bam2asn:convert (194); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/80/e3754ab7d5c3587c37e0df1d25b01f]
May-11 11:41:26.962 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:41:26.962 [Task submitter] INFO  nextflow.Session - [bc/45b73a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (227)
May-11 11:41:33.161 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1022; name: egapx:rnaseq_short_plane:bam2asn:convert (200); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ef/e7b414a72141a46f4f2bab0f6ec66c]
May-11 11:41:33.163 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:41:33.163 [Task submitter] INFO  nextflow.Session - [86/29771b] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (158)
May-11 11:41:34.278 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1013; name: egapx:rnaseq_short_plane:bam2asn:convert (191); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5f/ad19daf23f5abfbc11806d1c001b53]
May-11 11:41:34.281 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:41:34.281 [Task submitter] INFO  nextflow.Session - [da/0cd274] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (195)
May-11 11:41:37.092 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1012; name: egapx:rnaseq_short_plane:bam2asn:convert (190); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/16/aa64d39ca4382788cd36e514981646]
May-11 11:41:37.094 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:41:37.094 [Task submitter] INFO  nextflow.Session - [47/e65b16] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (212)
May-11 11:41:42.303 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1049; name: egapx:rnaseq_short_plane:bam2asn:convert (227); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bc/45b73a0f1a4c14b9c91bec11a3eb88]
May-11 11:41:42.305 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:41:42.305 [Task submitter] INFO  nextflow.Session - [15/1223f0] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (198)
May-11 11:41:43.948 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1026; name: egapx:rnaseq_short_plane:bam2asn:convert (204); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/93/31a12ad9a03ff8df499e3e9c9f1840]
May-11 11:41:43.949 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:41:43.949 [Task submitter] INFO  nextflow.Session - [2c/61ffae] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (160)
May-11 11:41:55.960 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1034; name: egapx:rnaseq_short_plane:bam2asn:convert (212); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/47/e65b16b79350981fa1312533605562]
May-11 11:41:55.962 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:41:55.962 [Task submitter] INFO  nextflow.Session - [41/13a438] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (193)
May-11 11:41:59.020 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1017; name: egapx:rnaseq_short_plane:bam2asn:convert (195); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/da/0cd274df876f334c805176abe1c187]
May-11 11:41:59.022 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:41:59.022 [Task submitter] INFO  nextflow.Session - [49/d0cea8] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (161)
May-11 11:42:04.621 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1020; name: egapx:rnaseq_short_plane:bam2asn:convert (198); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/15/1223f0797ef17e9490ff412821f6b1]
May-11 11:42:04.623 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:42:04.623 [Task submitter] INFO  nextflow.Session - [64/3f9339] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (220)
May-11 11:42:05.018 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 980; name: egapx:rnaseq_short_plane:bam2asn:convert (158); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/86/29771baefd1e98d4b5ca33fdfa10ef]
May-11 11:42:05.020 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:42:05.020 [Task submitter] INFO  nextflow.Session - [86/d53675] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (221)
May-11 11:42:18.253 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 982; name: egapx:rnaseq_short_plane:bam2asn:convert (160); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2c/61ffae0d428ad2bc2e1d2630c1e797]
May-11 11:42:18.255 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:42:18.255 [Task submitter] INFO  nextflow.Session - [ad/d61ba5] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (222)
May-11 11:42:23.139 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1015; name: egapx:rnaseq_short_plane:bam2asn:convert (193); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/41/13a438e49eacc8e56b68f77eb0ed66]
May-11 11:42:23.141 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:42:23.141 [Task submitter] INFO  nextflow.Session - [e0/6bc0bb] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (224)
May-11 11:42:27.986 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1043; name: egapx:rnaseq_short_plane:bam2asn:convert (221); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/86/d53675e098cbb90f0d794f12156ae9]
May-11 11:42:27.988 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:42:27.988 [Task submitter] INFO  nextflow.Session - [4c/a643aa] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (201)
May-11 11:42:29.131 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 983; name: egapx:rnaseq_short_plane:bam2asn:convert (161); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/49/d0cea895eb069ee4625f4d529f9975]
May-11 11:42:29.132 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:42:29.132 [Task submitter] INFO  nextflow.Session - [3a/64cbf4] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (213)
May-11 11:42:30.285 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1042; name: egapx:rnaseq_short_plane:bam2asn:convert (220); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/64/3f933906aa8db1697bb403998926d4]
May-11 11:42:30.287 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:42:30.288 [Task submitter] INFO  nextflow.Session - [e7/e27960] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (208)
May-11 11:42:39.438 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1044; name: egapx:rnaseq_short_plane:bam2asn:convert (222); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ad/d61ba5d863ed731794c41e64336033]
May-11 11:42:39.440 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:42:39.440 [Task submitter] INFO  nextflow.Session - [e1/7db508] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (202)
May-11 11:42:41.936 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1046; name: egapx:rnaseq_short_plane:bam2asn:convert (224); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e0/6bc0bbbc6f69ddf6282d579e05dffb]
May-11 11:42:41.937 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:42:41.937 [Task submitter] INFO  nextflow.Session - [20/7760d5] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (197)
May-11 11:42:51.378 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1035; name: egapx:rnaseq_short_plane:bam2asn:convert (213); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3a/64cbf4c00768bcdd0283c91fe3f643]
May-11 11:42:51.380 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:42:51.380 [Task submitter] INFO  nextflow.Session - [8f/30e936] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (192)
May-11 11:42:53.559 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1030; name: egapx:rnaseq_short_plane:bam2asn:convert (208); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e7/e2796058e540ee0350ca45f54b562a]
May-11 11:42:53.561 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:42:53.561 [Task submitter] INFO  nextflow.Session - [3e/2ead47] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (168)
May-11 11:42:54.747 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1023; name: egapx:rnaseq_short_plane:bam2asn:convert (201); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/4c/a643aa00746b547ba3fa03d9351c6d]
May-11 11:42:54.748 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:42:54.748 [Task submitter] INFO  nextflow.Session - [87/33f8d1] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (206)
May-11 11:43:02.388 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1024; name: egapx:rnaseq_short_plane:bam2asn:convert (202); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e1/7db5084c9a3469d603cdcbdc33e36f]
May-11 11:43:02.390 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:43:02.390 [Task submitter] INFO  nextflow.Session - [ed/6a6056] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (189)
May-11 11:43:05.830 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1019; name: egapx:rnaseq_short_plane:bam2asn:convert (197); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/20/7760d5c473d0bfa46269f8063e1cce]
May-11 11:43:05.832 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:43:05.832 [Task submitter] INFO  nextflow.Session - [11/0a72f7] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (205)
May-11 11:43:21.539 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1028; name: egapx:rnaseq_short_plane:bam2asn:convert (206); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/87/33f8d17b75b51d6f316f866683bdc9]
May-11 11:43:21.540 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:43:21.540 [Task submitter] INFO  nextflow.Session - [7d/3ee0f6] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (234)
May-11 11:43:22.917 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1014; name: egapx:rnaseq_short_plane:bam2asn:convert (192); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8f/30e9365185c7e15b2427dc384e96b8]
May-11 11:43:22.918 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:43:22.919 [Task submitter] INFO  nextflow.Session - [e1/38ca3b] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (223)
May-11 11:43:29.875 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 990; name: egapx:rnaseq_short_plane:bam2asn:convert (168); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3e/2ead4755aa7112c21a4920a266b1dd]
May-11 11:43:29.876 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:43:29.876 [Task submitter] INFO  nextflow.Session - [a6/fcf3bf] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (179)
May-11 11:43:32.073 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1027; name: egapx:rnaseq_short_plane:bam2asn:convert (205); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/11/0a72f7d4ec4558d7bcc740f1b4cbdf]
May-11 11:43:32.075 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:43:32.075 [Task submitter] INFO  nextflow.Session - [86/b64a1a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (239)
May-11 11:43:33.178 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1011; name: egapx:rnaseq_short_plane:bam2asn:convert (189); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ed/6a6056e36142a8ec944bc2f59aba80]
May-11 11:43:33.180 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:43:33.180 [Task submitter] INFO  nextflow.Session - [2f/aa25ef] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (196)
May-11 11:43:37.283 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 820; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/80/44fd7792889ba7da824b0d31a05a19]
~> TaskHandler[id: 1056; name: egapx:rnaseq_short_plane:bam2asn:convert (234); status: RUNNING; exit: -; error: -; workDir: Ath_work2/7d/3ee0f6e48c8fe3c09690ad382a2b06]
~> TaskHandler[id: 1045; name: egapx:rnaseq_short_plane:bam2asn:convert (223); status: RUNNING; exit: -; error: -; workDir: Ath_work2/e1/38ca3bc0ec629b4c7b0481e2d7bed8]
~> TaskHandler[id: 1001; name: egapx:rnaseq_short_plane:bam2asn:convert (179); status: RUNNING; exit: -; error: -; workDir: Ath_work2/a6/fcf3bf62a047b2c133f24fde83e28b]
~> TaskHandler[id: 1061; name: egapx:rnaseq_short_plane:bam2asn:convert (239); status: RUNNING; exit: -; error: -; workDir: Ath_work2/86/b64a1ad8177dfaf6b28d123e96c8aa]
~> TaskHandler[id: 1018; name: egapx:rnaseq_short_plane:bam2asn:convert (196); status: RUNNING; exit: -; error: -; workDir: Ath_work2/2f/aa25efc2356f9f4febdfc0ec18d85e]
May-11 11:43:41.035 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1056; name: egapx:rnaseq_short_plane:bam2asn:convert (234); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7d/3ee0f6e48c8fe3c09690ad382a2b06]
May-11 11:43:41.038 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:43:41.038 [Task submitter] INFO  nextflow.Session - [f0/2131dc] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (217)
May-11 11:43:50.883 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1045; name: egapx:rnaseq_short_plane:bam2asn:convert (223); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e1/38ca3bc0ec629b4c7b0481e2d7bed8]
May-11 11:43:50.885 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:43:50.885 [Task submitter] INFO  nextflow.Session - [46/4d6dd8] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (211)
May-11 11:43:56.722 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1061; name: egapx:rnaseq_short_plane:bam2asn:convert (239); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/86/b64a1ad8177dfaf6b28d123e96c8aa]
May-11 11:43:56.723 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:43:56.724 [Task submitter] INFO  nextflow.Session - [87/aced93] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (214)
May-11 11:44:03.546 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1018; name: egapx:rnaseq_short_plane:bam2asn:convert (196); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2f/aa25efc2356f9f4febdfc0ec18d85e]
May-11 11:44:03.548 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:44:03.548 [Task submitter] INFO  nextflow.Session - [10/8e45f1] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (245)
May-11 11:44:08.262 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1039; name: egapx:rnaseq_short_plane:bam2asn:convert (217); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f0/2131dc412ca79f880910cbd62205a8]
May-11 11:44:08.264 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:44:08.264 [Task submitter] INFO  nextflow.Session - [74/30e4df] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (236)
May-11 11:44:10.334 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1001; name: egapx:rnaseq_short_plane:bam2asn:convert (179); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a6/fcf3bf62a047b2c133f24fde83e28b]
May-11 11:44:10.336 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:44:10.336 [Task submitter] INFO  nextflow.Session - [11/136dfb] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (233)
May-11 11:44:17.976 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1033; name: egapx:rnaseq_short_plane:bam2asn:convert (211); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/46/4d6dd83c21e96806808d64b5e15f4d]
May-11 11:44:17.979 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:44:17.979 [Task submitter] INFO  nextflow.Session - [07/b8685b] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (238)
May-11 11:44:20.705 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 820; name: egapx:rnaseq_short_plane:bam_bin_and_sort:merge (387); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/80/44fd7792889ba7da824b0d31a05a19]
May-11 11:44:20.707 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:44:20.707 [Task submitter] INFO  nextflow.Session - [fe/ed4468] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (218)
May-11 11:44:26.748 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1036; name: egapx:rnaseq_short_plane:bam2asn:convert (214); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/87/aced9382afe0e70fbaa2c48ede63a6]
May-11 11:44:26.749 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:44:26.749 [Task submitter] INFO  nextflow.Session - [bf/e0dafe] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (209)
May-11 11:44:29.103 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1067; name: egapx:rnaseq_short_plane:bam2asn:convert (245); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/10/8e45f1050e0581edc976d6a973be89]
May-11 11:44:29.104 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:44:29.104 [Task submitter] INFO  nextflow.Session - [7f/a5a30f] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (240)
May-11 11:44:29.363 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1058; name: egapx:rnaseq_short_plane:bam2asn:convert (236); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/74/30e4dfca7130c72dc83d23d8d24364]
May-11 11:44:29.364 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:44:29.364 [Task submitter] INFO  nextflow.Session - [c8/33a63d] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (232)
May-11 11:44:34.026 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1055; name: egapx:rnaseq_short_plane:bam2asn:convert (233); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/11/136dfb96724ee1c6ca490f92f62308]
May-11 11:44:34.028 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:44:34.028 [Task submitter] INFO  nextflow.Session - [dd/2ba266] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (186)
May-11 11:44:45.621 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1060; name: egapx:rnaseq_short_plane:bam2asn:convert (238); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/07/b8685bd66c19f74e19b8534d2c9dcc]
May-11 11:44:45.623 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:44:45.623 [Task submitter] INFO  nextflow.Session - [f3/92bea6] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (216)
May-11 11:44:55.032 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1054; name: egapx:rnaseq_short_plane:bam2asn:convert (232); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c8/33a63d3460aad42c39a1987e8c9be5]
May-11 11:44:55.034 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:44:55.034 [Task submitter] INFO  nextflow.Session - [55/13bab2] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (228)
May-11 11:44:56.361 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1040; name: egapx:rnaseq_short_plane:bam2asn:convert (218); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fe/ed446823c6022c19a1a1fb41bdc835]
May-11 11:44:56.363 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:44:56.363 [Task submitter] INFO  nextflow.Session - [37/e0f2a6] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (248)
May-11 11:44:59.902 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1031; name: egapx:rnaseq_short_plane:bam2asn:convert (209); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bf/e0dafe34f92c560da6dc99677c2cf6]
May-11 11:44:59.903 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:44:59.903 [Task submitter] INFO  nextflow.Session - [50/ff557a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (246)
May-11 11:44:59.953 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1062; name: egapx:rnaseq_short_plane:bam2asn:convert (240); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7f/a5a30f0425d78fa0053f2c1ae76270]
May-11 11:44:59.954 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:44:59.954 [Task submitter] INFO  nextflow.Session - [61/6a774c] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (230)
May-11 11:45:15.424 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1008; name: egapx:rnaseq_short_plane:bam2asn:convert (186); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/dd/2ba2664c5740c1765e319e2ff79d9e]
May-11 11:45:15.426 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:45:15.426 [Task submitter] INFO  nextflow.Session - [48/6d2dcc] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (210)
May-11 11:45:18.372 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1070; name: egapx:rnaseq_short_plane:bam2asn:convert (248); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/37/e0f2a63e128cead125f44bc0800256]
May-11 11:45:18.374 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:45:18.374 [Task submitter] INFO  nextflow.Session - [d9/344a36] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (207)
May-11 11:45:18.615 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1038; name: egapx:rnaseq_short_plane:bam2asn:convert (216); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f3/92bea691023be59829ec7860d75c83]
May-11 11:45:18.616 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:45:18.616 [Task submitter] INFO  nextflow.Session - [97/72c614] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (231)
May-11 11:45:19.617 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 156 -- tasks to be submitted are shown below
~> TaskHandler[id: 1021; name: egapx:rnaseq_short_plane:bam2asn:convert (199); status: NEW; exit: -; error: -; workDir: Ath_work2/7d/8552bedfb6fe648ce60ad2ce9d8994]
~> TaskHandler[id: 1066; name: egapx:rnaseq_short_plane:bam2asn:convert (244); status: NEW; exit: -; error: -; workDir: Ath_work2/f9/027019f5cb2bf690f10a4e603739c5]
~> TaskHandler[id: 1064; name: egapx:rnaseq_short_plane:bam2asn:convert (242); status: NEW; exit: -; error: -; workDir: Ath_work2/e0/1f8cbb97f1cd5d88f15607e75950b9]
~> TaskHandler[id: 1069; name: egapx:rnaseq_short_plane:bam2asn:convert (247); status: NEW; exit: -; error: -; workDir: Ath_work2/d0/ea65d05d349465b2c1fcf8cce156be]
~> TaskHandler[id: 1047; name: egapx:rnaseq_short_plane:bam2asn:convert (225); status: NEW; exit: -; error: -; workDir: Ath_work2/fc/4eb94aa962189d846de191ced8edc1]
~> TaskHandler[id: 1048; name: egapx:rnaseq_short_plane:bam2asn:convert (226); status: NEW; exit: -; error: -; workDir: Ath_work2/63/55204d5d29cf8052726cf40643fc02]
~> TaskHandler[id: 1037; name: egapx:rnaseq_short_plane:bam2asn:convert (215); status: NEW; exit: -; error: -; workDir: Ath_work2/8d/ea18ab5e3fb5d6bdafd31e313b0f65]
~> TaskHandler[id: 1025; name: egapx:rnaseq_short_plane:bam2asn:convert (203); status: NEW; exit: -; error: -; workDir: Ath_work2/34/db3e0f1e26efcf28fb9f0a460e8114]
~> TaskHandler[id: 1071; name: egapx:rnaseq_short_plane:bam2asn:convert (249); status: NEW; exit: -; error: -; workDir: Ath_work2/25/8569baa413a696444805fd74276c03]
~> TaskHandler[id: 1059; name: egapx:rnaseq_short_plane:bam2asn:convert (237); status: NEW; exit: -; error: -; workDir: Ath_work2/56/8ae727cdd826bcd85189a234d5d4a3]
.. remaining tasks omitted.
May-11 11:45:28.952 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1052; name: egapx:rnaseq_short_plane:bam2asn:convert (230); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/61/6a774c4335173fa35d3b94818b2482]
May-11 11:45:28.954 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:45:28.954 [Task submitter] INFO  nextflow.Session - [7d/8552be] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (199)
May-11 11:45:30.078 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1050; name: egapx:rnaseq_short_plane:bam2asn:convert (228); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/55/13bab21f87b4642e8ed3408c226f01]
May-11 11:45:30.079 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:45:30.079 [Task submitter] INFO  nextflow.Session - [f9/027019] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (244)
May-11 11:45:30.431 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1068; name: egapx:rnaseq_short_plane:bam2asn:convert (246); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/50/ff557af0b20c7294a21bce8379d614]
May-11 11:45:30.433 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:45:30.433 [Task submitter] INFO  nextflow.Session - [e0/1f8cbb] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (242)
May-11 11:45:48.121 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1053; name: egapx:rnaseq_short_plane:bam2asn:convert (231); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/97/72c614c667e98bb22885701edd7666]
May-11 11:45:48.123 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:45:48.123 [Task submitter] INFO  nextflow.Session - [d0/ea65d0] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (247)
May-11 11:45:48.969 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1032; name: egapx:rnaseq_short_plane:bam2asn:convert (210); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/48/6d2dcc3b653d66069799d6ce288ff3]
May-11 11:45:48.971 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:45:48.971 [Task submitter] INFO  nextflow.Session - [fc/4eb94a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (225)
May-11 11:45:50.708 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1021; name: egapx:rnaseq_short_plane:bam2asn:convert (199); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7d/8552bedfb6fe648ce60ad2ce9d8994]
May-11 11:45:50.710 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:45:50.710 [Task submitter] INFO  nextflow.Session - [63/55204d] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (226)
May-11 11:45:56.578 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1029; name: egapx:rnaseq_short_plane:bam2asn:convert (207); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d9/344a3655ebd3e68e33df4716f8abc9]
May-11 11:45:56.580 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:45:56.580 [Task submitter] INFO  nextflow.Session - [8d/ea18ab] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (215)
May-11 11:45:58.417 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1066; name: egapx:rnaseq_short_plane:bam2asn:convert (244); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f9/027019f5cb2bf690f10a4e603739c5]
May-11 11:45:58.419 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:45:58.419 [Task submitter] INFO  nextflow.Session - [34/db3e0f] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (203)
May-11 11:46:06.663 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1064; name: egapx:rnaseq_short_plane:bam2asn:convert (242); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e0/1f8cbb97f1cd5d88f15607e75950b9]
May-11 11:46:06.664 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:46:06.664 [Task submitter] INFO  nextflow.Session - [25/8569ba] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (249)
May-11 11:46:21.366 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1069; name: egapx:rnaseq_short_plane:bam2asn:convert (247); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d0/ea65d05d349465b2c1fcf8cce156be]
May-11 11:46:21.368 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:46:21.368 [Task submitter] INFO  nextflow.Session - [56/8ae727] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (237)
May-11 11:46:25.547 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1037; name: egapx:rnaseq_short_plane:bam2asn:convert (215); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8d/ea18ab5e3fb5d6bdafd31e313b0f65]
May-11 11:46:25.549 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:46:25.549 [Task submitter] INFO  nextflow.Session - [ab/bc923a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (250)
May-11 11:46:30.218 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1025; name: egapx:rnaseq_short_plane:bam2asn:convert (203); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/34/db3e0f1e26efcf28fb9f0a460e8114]
May-11 11:46:30.220 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:46:30.220 [Task submitter] INFO  nextflow.Session - [12/50b801] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (219)
May-11 11:46:31.242 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1048; name: egapx:rnaseq_short_plane:bam2asn:convert (226); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/63/55204d5d29cf8052726cf40643fc02]
May-11 11:46:31.244 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:46:31.244 [Task submitter] INFO  nextflow.Session - [fb/426e86] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (243)
May-11 11:46:33.117 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1047; name: egapx:rnaseq_short_plane:bam2asn:convert (225); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fc/4eb94aa962189d846de191ced8edc1]
May-11 11:46:33.119 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:46:33.119 [Task submitter] INFO  nextflow.Session - [d8/7611ef] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (229)
May-11 11:46:46.763 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1071; name: egapx:rnaseq_short_plane:bam2asn:convert (249); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/25/8569baa413a696444805fd74276c03]
May-11 11:46:46.765 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:46:46.765 [Task submitter] INFO  nextflow.Session - [44/a46ac2] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (241)
May-11 11:47:03.216 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1059; name: egapx:rnaseq_short_plane:bam2asn:convert (237); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/56/8ae727cdd826bcd85189a234d5d4a3]
May-11 11:47:03.217 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:47:03.218 [Task submitter] INFO  nextflow.Session - [20/35308b] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (251)
May-11 11:47:05.936 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1072; name: egapx:rnaseq_short_plane:bam2asn:convert (250); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ab/bc923af5bfaa096a31f0f69d857063]
May-11 11:47:05.937 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:47:05.937 [Task submitter] INFO  nextflow.Session - [0c/dfd773] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (252)
May-11 11:47:14.422 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1041; name: egapx:rnaseq_short_plane:bam2asn:convert (219); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/12/50b80107ff296871d77f3e1aa32c3b]
May-11 11:47:14.424 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:47:14.424 [Task submitter] INFO  nextflow.Session - [55/dc02f5] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (255)
May-11 11:47:14.560 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1065; name: egapx:rnaseq_short_plane:bam2asn:convert (243); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fb/426e869cfaf07f97055475457a1fc2]
May-11 11:47:14.561 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:47:14.561 [Task submitter] INFO  nextflow.Session - [3c/865523] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (253)
May-11 11:47:22.162 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1051; name: egapx:rnaseq_short_plane:bam2asn:convert (229); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d8/7611eff994b51051109350cf3030f0]
May-11 11:47:22.164 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:47:22.164 [Task submitter] INFO  nextflow.Session - [00/2911a4] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (258)
May-11 11:47:24.571 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1063; name: egapx:rnaseq_short_plane:bam2asn:convert (241); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/44/a46ac246b5c6a4f56c2e3bcfa396dd]
May-11 11:47:24.573 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:47:24.573 [Task submitter] INFO  nextflow.Session - [bc/f1ab40] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (254)
May-11 11:47:28.402 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1073; name: egapx:rnaseq_short_plane:bam2asn:convert (251); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/20/35308b4720b8a5ad952704fae27156]
May-11 11:47:28.404 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:47:28.404 [Task submitter] INFO  nextflow.Session - [65/f756cd] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (259)
May-11 11:47:30.721 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1074; name: egapx:rnaseq_short_plane:bam2asn:convert (252); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0c/dfd7739c9182dc8165cb65f2782e6e]
May-11 11:47:30.723 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:47:30.723 [Task submitter] INFO  nextflow.Session - [09/4a6b04] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (257)
May-11 11:47:31.017 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1077; name: egapx:rnaseq_short_plane:bam2asn:convert (255); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/55/dc02f5400d1d5525c2d3f2c12adacc]
May-11 11:47:31.018 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:47:31.018 [Task submitter] INFO  nextflow.Session - [db/b70d0e] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (262)
May-11 11:47:35.814 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1075; name: egapx:rnaseq_short_plane:bam2asn:convert (253); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3c/865523c465c3ff5875067b6624dcb7]
May-11 11:47:35.816 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:47:35.816 [Task submitter] INFO  nextflow.Session - [10/e48c77] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (261)
May-11 11:47:46.250 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1084; name: egapx:rnaseq_short_plane:bam2asn:convert (262); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/db/b70d0e61ddc92f794ac992338e066e]
May-11 11:47:46.252 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:47:46.252 [Task submitter] INFO  nextflow.Session - [e3/4c9853] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (263)
May-11 11:47:47.632 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1083; name: egapx:rnaseq_short_plane:bam2asn:convert (261); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/10/e48c77c9c966756949b7003a8ba7f0]
May-11 11:47:47.634 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:47:47.634 [Task submitter] INFO  nextflow.Session - [f4/c49ace] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (256)
May-11 11:47:51.434 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1080; name: egapx:rnaseq_short_plane:bam2asn:convert (258); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/00/2911a4d828bf530cf4f2880b17aa53]
May-11 11:47:51.435 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:47:51.436 [Task submitter] INFO  nextflow.Session - [61/bdb010] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (260)
May-11 11:47:52.231 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1085; name: egapx:rnaseq_short_plane:bam2asn:convert (263); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e3/4c9853873ab859d8d8063db3444d31]
May-11 11:47:52.232 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:47:52.233 [Task submitter] INFO  nextflow.Session - [9c/603517] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (266)
May-11 11:47:54.868 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1081; name: egapx:rnaseq_short_plane:bam2asn:convert (259); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/65/f756cd8c1819013a527588c3476437]
May-11 11:47:54.870 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:47:54.870 [Task submitter] INFO  nextflow.Session - [38/15df4e] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (267)
May-11 11:47:55.343 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1076; name: egapx:rnaseq_short_plane:bam2asn:convert (254); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bc/f1ab40244422f57de25155e8cb1a23]
May-11 11:47:55.345 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:47:55.345 [Task submitter] INFO  nextflow.Session - [d6/f947ef] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (269)
May-11 11:47:57.613 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1088; name: egapx:rnaseq_short_plane:bam2asn:convert (266); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9c/6035175dac9adfe59e24e79db74e6a]
May-11 11:47:57.614 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:47:57.614 [Task submitter] INFO  nextflow.Session - [55/760c06] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (264)
May-11 11:48:00.044 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1089; name: egapx:rnaseq_short_plane:bam2asn:convert (267); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/38/15df4e1f91e7196ba777be71798134]
May-11 11:48:00.046 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:00.046 [Task submitter] INFO  nextflow.Session - [a5/9e1116] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (265)
May-11 11:48:00.553 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1091; name: egapx:rnaseq_short_plane:bam2asn:convert (269); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d6/f947ef36ec6d9f2d45a1e34780f81e]
May-11 11:48:00.554 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:00.554 [Task submitter] INFO  nextflow.Session - [76/e01194] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (270)
May-11 11:48:03.122 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1079; name: egapx:rnaseq_short_plane:bam2asn:convert (257); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/09/4a6b04af8ea0f8391a55a6f90cf1ab]
May-11 11:48:03.124 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:03.124 [Task submitter] INFO  nextflow.Session - [80/d89e6a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (275)
May-11 11:48:03.535 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1086; name: egapx:rnaseq_short_plane:bam2asn:convert (264); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/55/760c067092098b1380255402e87d4e]
May-11 11:48:03.537 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:03.537 [Task submitter] INFO  nextflow.Session - [7e/999d6d] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (273)
May-11 11:48:05.952 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1092; name: egapx:rnaseq_short_plane:bam2asn:convert (270); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/76/e011946a7f3ec03fa52854d12d7b94]
May-11 11:48:05.954 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:05.954 [Task submitter] INFO  nextflow.Session - [fe/9001d2] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (274)
May-11 11:48:07.106 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1082; name: egapx:rnaseq_short_plane:bam2asn:convert (260); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/61/bdb010cd245c38077a111dbbcf2a41]
May-11 11:48:07.107 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:07.107 [Task submitter] INFO  nextflow.Session - [18/ca27e8] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (277)
May-11 11:48:08.988 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1097; name: egapx:rnaseq_short_plane:bam2asn:convert (275); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/80/d89e6a34cde82b0d80c7da76cff11a]
May-11 11:48:08.990 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:08.990 [Task submitter] INFO  nextflow.Session - [7c/39c1dc] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (278)
May-11 11:48:09.231 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1087; name: egapx:rnaseq_short_plane:bam2asn:convert (265); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a5/9e1116f6cce8c483daddd0ff2b7a55]
May-11 11:48:09.232 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:09.232 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1095; name: egapx:rnaseq_short_plane:bam2asn:convert (273); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7e/999d6d1868c9554d676a15594471ae]
May-11 11:48:09.232 [Task submitter] INFO  nextflow.Session - [ca/0cb8c4] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (280)
May-11 11:48:09.234 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:09.234 [Task submitter] INFO  nextflow.Session - [57/d1a193] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (272)
May-11 11:48:13.303 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1096; name: egapx:rnaseq_short_plane:bam2asn:convert (274); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fe/9001d22eb3c9169be9f383e92daa4a]
May-11 11:48:13.304 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:13.304 [Task submitter] INFO  nextflow.Session - [10/37eb3b] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (271)
May-11 11:48:14.595 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1094; name: egapx:rnaseq_short_plane:bam2asn:convert (272); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/57/d1a1931e3f19c5ee303ca95d9b99ff]
May-11 11:48:14.597 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:14.597 [Task submitter] INFO  nextflow.Session - [9d/86f064] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (284)
May-11 11:48:17.996 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1099; name: egapx:rnaseq_short_plane:bam2asn:convert (277); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/18/ca27e8e6f64ea2d11790ee80e0ec33]
May-11 11:48:17.998 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:17.998 [Task submitter] INFO  nextflow.Session - [53/67b456] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (276)
May-11 11:48:18.188 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1093; name: egapx:rnaseq_short_plane:bam2asn:convert (271); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/10/37eb3b6740c6dc45ab10a40f5bf8c6]
May-11 11:48:18.189 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:18.189 [Task submitter] INFO  nextflow.Session - [a7/404601] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (282)
May-11 11:48:20.232 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1100; name: egapx:rnaseq_short_plane:bam2asn:convert (278); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/7c/39c1dc7b4e3b4eeb42cc062d6fe80f]
May-11 11:48:20.234 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:20.234 [Task submitter] INFO  nextflow.Session - [cd/1f4ac6] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (286)
May-11 11:48:21.800 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1102; name: egapx:rnaseq_short_plane:bam2asn:convert (280); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ca/0cb8c4a545b9286138f58750d99a7f]
May-11 11:48:21.802 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:21.802 [Task submitter] INFO  nextflow.Session - [95/dbeb28] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (283)
May-11 11:48:22.493 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1078; name: egapx:rnaseq_short_plane:bam2asn:convert (256); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f4/c49ace9c298f09ac0ff7491ff0c5c3]
May-11 11:48:22.495 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:22.495 [Task submitter] INFO  nextflow.Session - [a1/d99f7e] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (287)
May-11 11:48:25.465 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1098; name: egapx:rnaseq_short_plane:bam2asn:convert (276); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/53/67b45667769b4adde310bbb8e402f2]
May-11 11:48:25.467 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:25.467 [Task submitter] INFO  nextflow.Session - [60/434cdf] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (292)
May-11 11:48:25.893 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1106; name: egapx:rnaseq_short_plane:bam2asn:convert (284); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9d/86f0649374c67b6b634a25395200f3]
May-11 11:48:25.894 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:25.894 [Task submitter] INFO  nextflow.Session - [c9/1e11d4] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (281)
May-11 11:48:31.934 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1104; name: egapx:rnaseq_short_plane:bam2asn:convert (282); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a7/4046018f66dffeb26bf432157bd339]
May-11 11:48:31.937 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:31.937 [Task submitter] INFO  nextflow.Session - [37/a91e76] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (268)
May-11 11:48:34.402 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1105; name: egapx:rnaseq_short_plane:bam2asn:convert (283); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/95/dbeb28c3df4ce4f8cf35d5c1bbe7ed]
May-11 11:48:34.407 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:34.407 [Task submitter] INFO  nextflow.Session - [c6/0c7e43] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (290)
May-11 11:48:37.304 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 1108; name: egapx:rnaseq_short_plane:bam2asn:convert (286); status: RUNNING; exit: -; error: -; workDir: Ath_work2/cd/1f4ac684b484ae068cf36a37f181c3]
~> TaskHandler[id: 1109; name: egapx:rnaseq_short_plane:bam2asn:convert (287); status: RUNNING; exit: -; error: -; workDir: Ath_work2/a1/d99f7ea89addcfa3bfc3b3b0579360]
~> TaskHandler[id: 1114; name: egapx:rnaseq_short_plane:bam2asn:convert (292); status: RUNNING; exit: -; error: -; workDir: Ath_work2/60/434cdfe214505a66d62fcda3b03e91]
~> TaskHandler[id: 1103; name: egapx:rnaseq_short_plane:bam2asn:convert (281); status: RUNNING; exit: -; error: -; workDir: Ath_work2/c9/1e11d4913eede3f4925910d0a4baed]
~> TaskHandler[id: 1090; name: egapx:rnaseq_short_plane:bam2asn:convert (268); status: RUNNING; exit: -; error: -; workDir: Ath_work2/37/a91e768c6b717fa740f732a8956b6f]
~> TaskHandler[id: 1112; name: egapx:rnaseq_short_plane:bam2asn:convert (290); status: RUNNING; exit: -; error: -; workDir: Ath_work2/c6/0c7e43d1eef15e17794904ccd9a9d9]
May-11 11:48:37.834 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1108; name: egapx:rnaseq_short_plane:bam2asn:convert (286); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/cd/1f4ac684b484ae068cf36a37f181c3]
May-11 11:48:37.836 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:37.836 [Task submitter] INFO  nextflow.Session - [d4/c65c07] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (289)
May-11 11:48:38.876 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1109; name: egapx:rnaseq_short_plane:bam2asn:convert (287); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a1/d99f7ea89addcfa3bfc3b3b0579360]
May-11 11:48:38.877 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:38.877 [Task submitter] INFO  nextflow.Session - [00/753c15] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (294)
May-11 11:48:42.782 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1114; name: egapx:rnaseq_short_plane:bam2asn:convert (292); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/60/434cdfe214505a66d62fcda3b03e91]
May-11 11:48:42.783 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:42.783 [Task submitter] INFO  nextflow.Session - [f7/85ebf8] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (279)
May-11 11:48:45.660 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1103; name: egapx:rnaseq_short_plane:bam2asn:convert (281); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c9/1e11d4913eede3f4925910d0a4baed]
May-11 11:48:45.661 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:45.661 [Task submitter] INFO  nextflow.Session - [3e/444902] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (293)
May-11 11:48:53.283 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1116; name: egapx:rnaseq_short_plane:bam2asn:convert (294); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/00/753c1557ec50cf73df27651377b10e]
May-11 11:48:53.285 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:48:53.285 [Task submitter] INFO  nextflow.Session - [3c/d088d9] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (291)
May-11 11:49:00.740 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1112; name: egapx:rnaseq_short_plane:bam2asn:convert (290); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c6/0c7e43d1eef15e17794904ccd9a9d9]
May-11 11:49:00.741 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:00.741 [Task submitter] INFO  nextflow.Session - [82/037c05] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (295)
May-11 11:49:01.959 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1101; name: egapx:rnaseq_short_plane:bam2asn:convert (279); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f7/85ebf8bdb25bef5bab2038611c450b]
May-11 11:49:01.961 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:01.961 [Task submitter] INFO  nextflow.Session - [d2/982e51] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (301)
May-11 11:49:03.634 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1090; name: egapx:rnaseq_short_plane:bam2asn:convert (268); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/37/a91e768c6b717fa740f732a8956b6f]
May-11 11:49:03.636 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:03.636 [Task submitter] INFO  nextflow.Session - [e2/7ccb8b] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (325)
May-11 11:49:06.333 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1111; name: egapx:rnaseq_short_plane:bam2asn:convert (289); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d4/c65c072777a70e6b7a2d13820c6ef4]
May-11 11:49:06.335 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:06.335 [Task submitter] INFO  nextflow.Session - [0e/cbc278] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (302)
May-11 11:49:08.962 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1115; name: egapx:rnaseq_short_plane:bam2asn:convert (293); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3e/4449022fb79fa7f9c5250f1d1bd24a]
May-11 11:49:08.964 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:08.964 [Task submitter] INFO  nextflow.Session - [78/9aa6ec] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (328)
May-11 11:49:12.110 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1147; name: egapx:rnaseq_short_plane:bam2asn:convert (325); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e2/7ccb8bd35f53ce1292c7ab596b773c]
May-11 11:49:12.111 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:12.111 [Task submitter] INFO  nextflow.Session - [2a/42d689] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (299)
May-11 11:49:13.942 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1150; name: egapx:rnaseq_short_plane:bam2asn:convert (328); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/78/9aa6ec51f60d19d92e50f56996f056]
May-11 11:49:13.943 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:13.943 [Task submitter] INFO  nextflow.Session - [98/1b14e8] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (304)
May-11 11:49:16.160 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1123; name: egapx:rnaseq_short_plane:bam2asn:convert (301); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d2/982e5158cfa705fdb305156258ce35]
May-11 11:49:16.161 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:16.162 [Task submitter] INFO  nextflow.Session - [37/3674d4] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (312)
May-11 11:49:18.401 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1113; name: egapx:rnaseq_short_plane:bam2asn:convert (291); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3c/d088d9d49e89e18817b7620e9b7a5f]
May-11 11:49:18.402 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:18.403 [Task submitter] INFO  nextflow.Session - [3f/ab6fc5] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (313)
May-11 11:49:21.334 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1117; name: egapx:rnaseq_short_plane:bam2asn:convert (295); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/82/037c05f34bcb9f5c78183c60c599b8]
May-11 11:49:21.336 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:21.336 [Task submitter] INFO  nextflow.Session - [e8/90dc74] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (310)
May-11 11:49:22.154 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1124; name: egapx:rnaseq_short_plane:bam2asn:convert (302); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/0e/cbc2786a9348dc3af9191ecc89f922]
May-11 11:49:22.156 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:22.156 [Task submitter] INFO  nextflow.Session - [e1/693018] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (316)
May-11 11:49:25.979 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1134; name: egapx:rnaseq_short_plane:bam2asn:convert (312); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/37/3674d45adb75c2227dd410a6dbc3c3]
May-11 11:49:25.980 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:25.980 [Task submitter] INFO  nextflow.Session - [a7/c2dc4c] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (288)
May-11 11:49:30.633 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1121; name: egapx:rnaseq_short_plane:bam2asn:convert (299); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2a/42d68960dabfe422efa3b975ff63ed]
May-11 11:49:30.635 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:30.635 [Task submitter] INFO  nextflow.Session - [fc/978c35] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (300)
May-11 11:49:35.917 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1126; name: egapx:rnaseq_short_plane:bam2asn:convert (304); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/98/1b14e8e8c8f3465394d80b7f67ce33]
May-11 11:49:35.919 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:35.919 [Task submitter] INFO  nextflow.Session - [8f/d4186b] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (305)
May-11 11:49:39.461 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1135; name: egapx:rnaseq_short_plane:bam2asn:convert (313); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3f/ab6fc578b6bd0068ccc8ee2265d602]
May-11 11:49:39.462 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:39.462 [Task submitter] INFO  nextflow.Session - [25/0761cc] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (339)
May-11 11:49:44.125 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1132; name: egapx:rnaseq_short_plane:bam2asn:convert (310); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e8/90dc7436cba53fc8305dec08df0ef2]
May-11 11:49:44.127 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:44.127 [Task submitter] INFO  nextflow.Session - [20/20e167] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (298)
May-11 11:49:46.167 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1110; name: egapx:rnaseq_short_plane:bam2asn:convert (288); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a7/c2dc4c1acec4b971c0586729ca34a9]
May-11 11:49:46.169 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:46.169 [Task submitter] INFO  nextflow.Session - [8b/61ae9a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (326)
May-11 11:49:47.367 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1138; name: egapx:rnaseq_short_plane:bam2asn:convert (316); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e1/693018549a184cd89f896ba1c7c21d]
May-11 11:49:47.369 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:47.369 [Task submitter] INFO  nextflow.Session - [f4/63a4a7] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (297)
May-11 11:49:47.376 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1161; name: egapx:rnaseq_short_plane:bam2asn:convert (339); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/25/0761ccacfde1e9b7bb5cf96c8a2e4e]
May-11 11:49:47.378 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:47.378 [Task submitter] INFO  nextflow.Session - [60/371b81] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (337)
May-11 11:49:52.386 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1159; name: egapx:rnaseq_short_plane:bam2asn:convert (337); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/60/371b816cc71b43d9f39791cd3ab626]
May-11 11:49:52.388 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:52.388 [Task submitter] INFO  nextflow.Session - [96/594783] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (329)
May-11 11:49:54.102 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1148; name: egapx:rnaseq_short_plane:bam2asn:convert (326); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8b/61ae9af68f45c54b81449b2997dcdd]
May-11 11:49:54.105 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:54.105 [Task submitter] INFO  nextflow.Session - [f6/9b59f5] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (303)
May-11 11:49:55.088 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1122; name: egapx:rnaseq_short_plane:bam2asn:convert (300); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/fc/978c3581f5eaba5b186649f3b01a56]
May-11 11:49:55.090 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:55.090 [Task submitter] INFO  nextflow.Session - [81/e257cf] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (308)
May-11 11:49:57.325 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1151; name: egapx:rnaseq_short_plane:bam2asn:convert (329); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/96/594783aa4b90cc12fa956d3d987e0e]
May-11 11:49:57.326 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:49:57.327 [Task submitter] INFO  nextflow.Session - [12/1eca58] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (330)
May-11 11:50:00.157 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1127; name: egapx:rnaseq_short_plane:bam2asn:convert (305); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8f/d4186b5a731a6967b5e5ed7b01eb5c]
May-11 11:50:00.159 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:50:00.159 [Task submitter] INFO  nextflow.Session - [d9/717153] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (296)
May-11 11:50:02.031 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1152; name: egapx:rnaseq_short_plane:bam2asn:convert (330); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/12/1eca58b403af45ddc903e136bd4366]
May-11 11:50:02.034 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:50:02.034 [Task submitter] INFO  nextflow.Session - [05/a56961] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (322)
May-11 11:50:10.444 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1120; name: egapx:rnaseq_short_plane:bam2asn:convert (298); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/20/20e167a06a245c7f94577521a3c91f]
May-11 11:50:10.445 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:50:10.445 [Task submitter] INFO  nextflow.Session - [9e/af61ae] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (317)
May-11 11:50:15.204 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1119; name: egapx:rnaseq_short_plane:bam2asn:convert (297); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f4/63a4a7d90f069cc0c21247fd65723f]
May-11 11:50:15.206 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:50:15.206 [Task submitter] INFO  nextflow.Session - [84/e67b38] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (311)
May-11 11:50:19.803 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1144; name: egapx:rnaseq_short_plane:bam2asn:convert (322); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/05/a569611d96aa21e1c62080907ada0f]
May-11 11:50:19.804 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:50:19.805 [Task submitter] INFO  nextflow.Session - [eb/cd7b74] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (309)
May-11 11:50:19.805 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 71 -- tasks to be submitted are shown below
~> TaskHandler[id: 1141; name: egapx:rnaseq_short_plane:bam2asn:convert (319); status: NEW; exit: -; error: -; workDir: Ath_work2/8f/117f355c09e423d416dd188c5277dd]
~> TaskHandler[id: 1154; name: egapx:rnaseq_short_plane:bam2asn:convert (332); status: NEW; exit: -; error: -; workDir: Ath_work2/e4/fe6d1335d010c1c2a5850ea95bc51e]
~> TaskHandler[id: 1128; name: egapx:rnaseq_short_plane:bam2asn:convert (306); status: NEW; exit: -; error: -; workDir: Ath_work2/97/d2dda87c57df81138045a98f90fa17]
~> TaskHandler[id: 1145; name: egapx:rnaseq_short_plane:bam2asn:convert (323); status: NEW; exit: -; error: -; workDir: Ath_work2/29/ba53584e51e29f0d49a0b62986de11]
~> TaskHandler[id: 1136; name: egapx:rnaseq_short_plane:bam2asn:convert (314); status: NEW; exit: -; error: -; workDir: Ath_work2/3b/5e16aff084ad71dce063c4bb8f4c40]
~> TaskHandler[id: 1158; name: egapx:rnaseq_short_plane:bam2asn:convert (336); status: NEW; exit: -; error: -; workDir: Ath_work2/1d/061c669a4bda851402280b82aeb32f]
~> TaskHandler[id: 1149; name: egapx:rnaseq_short_plane:bam2asn:convert (327); status: NEW; exit: -; error: -; workDir: Ath_work2/08/15f19c218e59b1941c1748666ca8e3]
~> TaskHandler[id: 1153; name: egapx:rnaseq_short_plane:bam2asn:convert (331); status: NEW; exit: -; error: -; workDir: Ath_work2/f3/f9cc4b5ace689d8382b8bf7b08cf06]
~> TaskHandler[id: 1155; name: egapx:rnaseq_short_plane:bam2asn:convert (333); status: NEW; exit: -; error: -; workDir: Ath_work2/39/2dfc3742a1d16777875171cd8d0102]
~> TaskHandler[id: 1140; name: egapx:rnaseq_short_plane:bam2asn:convert (318); status: NEW; exit: -; error: -; workDir: Ath_work2/94/696cd601a6cb92ab2f2a8ba3e1ecc1]
.. remaining tasks omitted.
May-11 11:50:21.756 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1130; name: egapx:rnaseq_short_plane:bam2asn:convert (308); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/81/e257cf9fffa63f30b811425740ee84]
May-11 11:50:21.757 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:50:21.757 [Task submitter] INFO  nextflow.Session - [8f/117f35] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (319)
May-11 11:50:23.150 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1125; name: egapx:rnaseq_short_plane:bam2asn:convert (303); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f6/9b59f5038d5d8ef1a588d6a1be9016]
May-11 11:50:23.151 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:50:23.151 [Task submitter] INFO  nextflow.Session - [e4/fe6d13] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (332)
May-11 11:50:27.734 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1154; name: egapx:rnaseq_short_plane:bam2asn:convert (332); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e4/fe6d1335d010c1c2a5850ea95bc51e]
May-11 11:50:27.736 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:50:27.736 [Task submitter] INFO  nextflow.Session - [97/d2dda8] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (306)
May-11 11:50:29.219 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1118; name: egapx:rnaseq_short_plane:bam2asn:convert (296); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d9/7171537700972938c639af26459f56]
May-11 11:50:29.221 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:50:29.221 [Task submitter] INFO  nextflow.Session - [29/ba5358] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (323)
May-11 11:50:39.716 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1139; name: egapx:rnaseq_short_plane:bam2asn:convert (317); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9e/af61ae19cf278ea37eb60d732291e6]
May-11 11:50:39.718 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:50:39.718 [Task submitter] INFO  nextflow.Session - [3b/5e16af] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (314)
May-11 11:50:41.151 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1131; name: egapx:rnaseq_short_plane:bam2asn:convert (309); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/eb/cd7b74a83b97150893291836e626db]
May-11 11:50:41.153 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:50:41.153 [Task submitter] INFO  nextflow.Session - [1d/061c66] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (336)
May-11 11:50:43.656 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1145; name: egapx:rnaseq_short_plane:bam2asn:convert (323); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/29/ba53584e51e29f0d49a0b62986de11]
May-11 11:50:43.658 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:50:43.658 [Task submitter] INFO  nextflow.Session - [08/15f19c] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (327)
May-11 11:50:45.890 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1158; name: egapx:rnaseq_short_plane:bam2asn:convert (336); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1d/061c669a4bda851402280b82aeb32f]
May-11 11:50:45.892 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:50:45.892 [Task submitter] INFO  nextflow.Session - [f3/f9cc4b] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (331)
May-11 11:50:48.719 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1141; name: egapx:rnaseq_short_plane:bam2asn:convert (319); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8f/117f355c09e423d416dd188c5277dd]
May-11 11:50:48.722 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:50:48.722 [Task submitter] INFO  nextflow.Session - [39/2dfc37] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (333)
May-11 11:50:49.549 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1133; name: egapx:rnaseq_short_plane:bam2asn:convert (311); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/84/e67b387e2350ba9abe28020f0f24cc]
May-11 11:50:49.552 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:50:49.552 [Task submitter] INFO  nextflow.Session - [94/696cd6] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (318)
May-11 11:50:51.126 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1153; name: egapx:rnaseq_short_plane:bam2asn:convert (331); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/f3/f9cc4b5ace689d8382b8bf7b08cf06]
May-11 11:50:51.127 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:50:51.127 [Task submitter] INFO  nextflow.Session - [c2/6c541b] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (334)
May-11 11:50:53.709 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1155; name: egapx:rnaseq_short_plane:bam2asn:convert (333); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/39/2dfc3742a1d16777875171cd8d0102]
May-11 11:50:53.711 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:50:53.711 [Task submitter] INFO  nextflow.Session - [bf/a76323] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (315)
May-11 11:50:55.778 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1156; name: egapx:rnaseq_short_plane:bam2asn:convert (334); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c2/6c541b00e0c24dd29ec26ed22578df]
May-11 11:50:55.780 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:50:55.780 [Task submitter] INFO  nextflow.Session - [c5/b17fc6] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (320)
May-11 11:51:01.782 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1128; name: egapx:rnaseq_short_plane:bam2asn:convert (306); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/97/d2dda87c57df81138045a98f90fa17]
May-11 11:51:01.784 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:51:01.784 [Task submitter] INFO  nextflow.Session - [81/2c0b24] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (340)
May-11 11:51:16.938 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1136; name: egapx:rnaseq_short_plane:bam2asn:convert (314); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3b/5e16aff084ad71dce063c4bb8f4c40]
May-11 11:51:16.939 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:51:16.939 [Task submitter] INFO  nextflow.Session - [2a/8f5253] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (335)
May-11 11:51:17.353 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1149; name: egapx:rnaseq_short_plane:bam2asn:convert (327); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/08/15f19c218e59b1941c1748666ca8e3]
May-11 11:51:17.354 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:51:17.354 [Task submitter] INFO  nextflow.Session - [eb/58fe58] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (324)
May-11 11:51:21.308 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1137; name: egapx:rnaseq_short_plane:bam2asn:convert (315); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/bf/a763232364340ff3b0de78b79e22a8]
May-11 11:51:21.309 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:51:21.309 [Task submitter] INFO  nextflow.Session - [e7/5aa855] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (307)
May-11 11:51:23.639 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1162; name: egapx:rnaseq_short_plane:bam2asn:convert (340); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/81/2c0b24814954f7bdd11d2213b18088]
May-11 11:51:23.641 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:51:23.641 [Task submitter] INFO  nextflow.Session - [03/9622c3] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (321)
May-11 11:51:27.326 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1142; name: egapx:rnaseq_short_plane:bam2asn:convert (320); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c5/b17fc6151d5f12c18c8e6d1187be6e]
May-11 11:51:27.328 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:51:27.328 [Task submitter] INFO  nextflow.Session - [43/f03439] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (342)
May-11 11:51:29.247 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1140; name: egapx:rnaseq_short_plane:bam2asn:convert (318); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/94/696cd601a6cb92ab2f2a8ba3e1ecc1]
May-11 11:51:29.249 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:51:29.249 [Task submitter] INFO  nextflow.Session - [d1/7e172f] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (343)
May-11 11:51:38.897 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1157; name: egapx:rnaseq_short_plane:bam2asn:convert (335); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2a/8f5253c37f2123c7efa4afa372d51e]
May-11 11:51:38.898 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:51:38.898 [Task submitter] INFO  nextflow.Session - [77/e06483] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (338)
May-11 11:51:43.156 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1164; name: egapx:rnaseq_short_plane:bam2asn:convert (342); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/43/f0343926e96a10bd1696a7cea48247]
May-11 11:51:43.158 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:51:43.158 [Task submitter] INFO  nextflow.Session - [57/4c94ce] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (345)
May-11 11:51:45.650 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1165; name: egapx:rnaseq_short_plane:bam2asn:convert (343); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d1/7e172f06f4eed36083a040fbace2d7]
May-11 11:51:45.652 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:51:45.652 [Task submitter] INFO  nextflow.Session - [10/bd37fd] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (344)
May-11 11:51:49.909 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1146; name: egapx:rnaseq_short_plane:bam2asn:convert (324); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/eb/58fe58d7ef5d964c59d49fd5aea373]
May-11 11:51:49.911 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:51:49.911 [Task submitter] INFO  nextflow.Session - [3f/1a3207] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (285)
May-11 11:51:52.268 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1160; name: egapx:rnaseq_short_plane:bam2asn:convert (338); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/77/e0648310ac1e5d5e5be6ff76956fd7]
May-11 11:51:52.270 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:51:52.270 [Task submitter] INFO  nextflow.Session - [5b/6faad4] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (341)
May-11 11:51:59.958 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1166; name: egapx:rnaseq_short_plane:bam2asn:convert (344); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/10/bd37fdce06af48ee942d392746e5cd]
May-11 11:51:59.960 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:51:59.960 [Task submitter] INFO  nextflow.Session - [6f/580b04] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (235)
May-11 11:52:00.855 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1163; name: egapx:rnaseq_short_plane:bam2asn:convert (341); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/5b/6faad4f57962c6d4df5f23c1babd9a]
May-11 11:52:00.857 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:52:00.857 [Task submitter] INFO  nextflow.Session - [70/1b87a0] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (346)
May-11 11:52:02.411 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1143; name: egapx:rnaseq_short_plane:bam2asn:convert (321); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/03/9622c38e4c071b49fc54c4f7d85699]
May-11 11:52:02.412 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:52:02.412 [Task submitter] INFO  nextflow.Session - [92/8a04be] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (347)
May-11 11:52:05.452 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1167; name: egapx:rnaseq_short_plane:bam2asn:convert (345); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/57/4c94ce6cbd8b552c3cea1ed5f6fa57]
May-11 11:52:05.453 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:52:05.453 [Task submitter] INFO  nextflow.Session - [08/f032d5] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (352)
May-11 11:52:07.010 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1129; name: egapx:rnaseq_short_plane:bam2asn:convert (307); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e7/5aa8558a9c05058bcce47e1fbd448a]
May-11 11:52:07.011 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:52:07.011 [Task submitter] INFO  nextflow.Session - [17/467645] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (349)
May-11 11:52:22.993 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1169; name: egapx:rnaseq_short_plane:bam2asn:convert (347); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/92/8a04befae872b3557fde436940ceb3]
May-11 11:52:22.994 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:52:22.994 [Task submitter] INFO  nextflow.Session - [e8/c949d9] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (351)
May-11 11:52:26.294 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1171; name: egapx:rnaseq_short_plane:bam2asn:convert (349); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/17/4676457491db83be0a72098a41b731]
May-11 11:52:26.295 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:52:26.295 [Task submitter] INFO  nextflow.Session - [28/511de7] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (348)
May-11 11:52:28.020 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1174; name: egapx:rnaseq_short_plane:bam2asn:convert (352); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/08/f032d5ff5acc089cdbb93958265dc2]
May-11 11:52:28.022 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:52:28.022 [Task submitter] INFO  nextflow.Session - [b3/65107f] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (358)
May-11 11:52:29.733 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1168; name: egapx:rnaseq_short_plane:bam2asn:convert (346); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/70/1b87a0eeb2aa54b18820b565905485]
May-11 11:52:29.734 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:52:29.735 [Task submitter] INFO  nextflow.Session - [9d/c5168f] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (350)
May-11 11:52:46.817 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1180; name: egapx:rnaseq_short_plane:bam2asn:convert (358); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b3/65107fdcb38fc2b57c159b97798c73]
May-11 11:52:46.818 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:52:46.818 [Task submitter] INFO  nextflow.Session - [b4/08cb06] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (353)
May-11 11:52:49.807 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1170; name: egapx:rnaseq_short_plane:bam2asn:convert (348); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/28/511de71033f02827ddaf75efcc7050]
May-11 11:52:49.809 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:52:49.809 [Task submitter] INFO  nextflow.Session - [3c/01a9b8] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (354)
May-11 11:52:50.500 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1173; name: egapx:rnaseq_short_plane:bam2asn:convert (351); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e8/c949d9e0a5ee970b8d459ab3118b71]
May-11 11:52:50.502 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:52:50.502 [Task submitter] INFO  nextflow.Session - [22/5b8ede] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (356)
May-11 11:52:50.563 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1172; name: egapx:rnaseq_short_plane:bam2asn:convert (350); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/9d/c5168f18e7c100ab06b2ab564e7c9d]
May-11 11:52:50.565 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:52:50.565 [Task submitter] INFO  nextflow.Session - [51/ae6d23] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (359)
May-11 11:53:10.520 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1176; name: egapx:rnaseq_short_plane:bam2asn:convert (354); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3c/01a9b8007ece978ec685907f3ca6f8]
May-11 11:53:10.522 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:53:10.522 [Task submitter] INFO  nextflow.Session - [b8/7bf757] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (360)
May-11 11:53:14.076 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1175; name: egapx:rnaseq_short_plane:bam2asn:convert (353); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b4/08cb061c8871b35a048e5cfe947fe1]
May-11 11:53:14.077 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:53:14.077 [Task submitter] INFO  nextflow.Session - [a1/5ecfc6] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (355)
May-11 11:53:14.498 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1178; name: egapx:rnaseq_short_plane:bam2asn:convert (356); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/22/5b8ede62118a073e678d05e6466117]
May-11 11:53:14.500 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:53:14.500 [Task submitter] INFO  nextflow.Session - [c9/bc0947] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (362)
May-11 11:53:21.799 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1181; name: egapx:rnaseq_short_plane:bam2asn:convert (359); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/51/ae6d23674316985776da71b4157537]
May-11 11:53:21.800 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:53:21.800 [Task submitter] INFO  nextflow.Session - [e5/b5e90d] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (364)
May-11 11:53:29.365 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1182; name: egapx:rnaseq_short_plane:bam2asn:convert (360); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b8/7bf7578b732fd6f488e73b3db55f64]
May-11 11:53:29.366 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:53:29.366 [Task submitter] INFO  nextflow.Session - [11/9f9f7c] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (363)
May-11 11:53:32.675 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1184; name: egapx:rnaseq_short_plane:bam2asn:convert (362); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c9/bc0947b27972ec9995cf0255f9cec8]
May-11 11:53:32.677 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:53:32.677 [Task submitter] INFO  nextflow.Session - [dd/857179] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (357)
May-11 11:53:37.381 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 6 -- submitted tasks are shown below
~> TaskHandler[id: 1107; name: egapx:rnaseq_short_plane:bam2asn:convert (285); status: RUNNING; exit: -; error: -; workDir: Ath_work2/3f/1a32070071f9214797fa3a9b156be5]
~> TaskHandler[id: 1057; name: egapx:rnaseq_short_plane:bam2asn:convert (235); status: RUNNING; exit: -; error: -; workDir: Ath_work2/6f/580b049d6462d64e9c35861286d8ef]
~> TaskHandler[id: 1177; name: egapx:rnaseq_short_plane:bam2asn:convert (355); status: RUNNING; exit: -; error: -; workDir: Ath_work2/a1/5ecfc601bf82006b671a6ef6f0b0bf]
~> TaskHandler[id: 1186; name: egapx:rnaseq_short_plane:bam2asn:convert (364); status: RUNNING; exit: -; error: -; workDir: Ath_work2/e5/b5e90df1ab19c9f2dc9c01bf071414]
~> TaskHandler[id: 1185; name: egapx:rnaseq_short_plane:bam2asn:convert (363); status: RUNNING; exit: -; error: -; workDir: Ath_work2/11/9f9f7c2def34d2977944c40d9c072f]
~> TaskHandler[id: 1179; name: egapx:rnaseq_short_plane:bam2asn:convert (357); status: RUNNING; exit: -; error: -; workDir: Ath_work2/dd/85717967b289de3d755f550a4208e2]
May-11 11:53:39.165 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1107; name: egapx:rnaseq_short_plane:bam2asn:convert (285); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3f/1a32070071f9214797fa3a9b156be5]
May-11 11:53:39.167 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:53:39.167 [Task submitter] INFO  nextflow.Session - [85/491c60] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (366)
May-11 11:53:40.607 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1186; name: egapx:rnaseq_short_plane:bam2asn:convert (364); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e5/b5e90df1ab19c9f2dc9c01bf071414]
May-11 11:53:40.608 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:53:40.608 [Task submitter] INFO  nextflow.Session - [c8/e52ab0] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (371)
May-11 11:53:45.952 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1185; name: egapx:rnaseq_short_plane:bam2asn:convert (363); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/11/9f9f7c2def34d2977944c40d9c072f]
May-11 11:53:45.954 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:53:45.954 [Task submitter] INFO  nextflow.Session - [88/ed7789] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (361)
May-11 11:53:55.057 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1177; name: egapx:rnaseq_short_plane:bam2asn:convert (355); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a1/5ecfc601bf82006b671a6ef6f0b0bf]
May-11 11:53:55.058 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:53:55.058 [Task submitter] INFO  nextflow.Session - [cd/c6123f] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (367)
May-11 11:53:58.170 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1188; name: egapx:rnaseq_short_plane:bam2asn:convert (366); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/85/491c602be42c5b6587ca9a9f7e333e]
May-11 11:53:58.172 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:53:58.172 [Task submitter] INFO  nextflow.Session - [a3/81e1ef] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (370)
May-11 11:53:59.836 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1193; name: egapx:rnaseq_short_plane:bam2asn:convert (371); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c8/e52ab0c110375d18e28f8f1d459e09]
May-11 11:53:59.838 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:53:59.838 [Task submitter] INFO  nextflow.Session - [87/1c4e42] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (365)
May-11 11:54:15.962 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1179; name: egapx:rnaseq_short_plane:bam2asn:convert (357); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/dd/85717967b289de3d755f550a4208e2]
May-11 11:54:15.964 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:54:15.964 [Task submitter] INFO  nextflow.Session - [b1/b3c4f5] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (372)
May-11 11:54:20.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1189; name: egapx:rnaseq_short_plane:bam2asn:convert (367); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/cd/c6123f0bc4013257d3dab3dbaa05bd]
May-11 11:54:20.112 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:54:20.112 [Task submitter] INFO  nextflow.Session - [42/893b87] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (374)
May-11 11:54:21.478 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1183; name: egapx:rnaseq_short_plane:bam2asn:convert (361); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/88/ed77897fd6f48af1edc5c572f41eeb]
May-11 11:54:21.480 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:54:21.480 [Task submitter] INFO  nextflow.Session - [d5/0e7ceb] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (386)
May-11 11:54:28.738 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1192; name: egapx:rnaseq_short_plane:bam2asn:convert (370); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/a3/81e1ef38f446d2f7cfebe2bba28fbc]
May-11 11:54:28.740 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:54:28.740 [Task submitter] INFO  nextflow.Session - [2c/07c85d] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (375)
May-11 11:54:34.060 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1194; name: egapx:rnaseq_short_plane:bam2asn:convert (372); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/b1/b3c4f53f02293e70bbc67b6a566b14]
May-11 11:54:34.062 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:54:34.062 [Task submitter] INFO  nextflow.Session - [72/15c14a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (373)
May-11 11:54:35.083 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1187; name: egapx:rnaseq_short_plane:bam2asn:convert (365); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/87/1c4e4230f9a1b9ecfdf88f95785078]
May-11 11:54:35.085 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:54:35.085 [Task submitter] INFO  nextflow.Session - [27/7460eb] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (377)
May-11 11:54:36.245 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1208; name: egapx:rnaseq_short_plane:bam2asn:convert (386); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d5/0e7ceb127c6522dd5d4ab4c2913a8b]
May-11 11:54:36.247 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:54:36.247 [Task submitter] INFO  nextflow.Session - [3b/7b5c2b] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (382)
May-11 11:54:47.446 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1196; name: egapx:rnaseq_short_plane:bam2asn:convert (374); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/42/893b87fed8be137994efa9097f1899]
May-11 11:54:47.447 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:54:47.447 [Task submitter] INFO  nextflow.Session - [28/f480de] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (381)
May-11 11:54:50.476 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1197; name: egapx:rnaseq_short_plane:bam2asn:convert (375); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/2c/07c85d5b2da8f0b8e3e9764f659cce]
May-11 11:54:50.479 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:54:50.480 [Task submitter] INFO  nextflow.Session - [03/6bdc53] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (368)
May-11 11:54:55.957 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1204; name: egapx:rnaseq_short_plane:bam2asn:convert (382); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/3b/7b5c2be491499c5d3ebbbd123a1568]
May-11 11:54:55.959 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:54:55.959 [Task submitter] INFO  nextflow.Session - [65/da3c85] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (383)
May-11 11:54:56.537 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1195; name: egapx:rnaseq_short_plane:bam2asn:convert (373); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/72/15c14a5dbfbc176ab1a1c168b47a47]
May-11 11:54:56.539 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:54:56.540 [Task submitter] INFO  nextflow.Session - [10/768f10] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (379)
May-11 11:54:59.208 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1199; name: egapx:rnaseq_short_plane:bam2asn:convert (377); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/27/7460eb334e2799f02c6574882ef598]
May-11 11:54:59.210 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:54:59.210 [Task submitter] INFO  nextflow.Session - [6d/c5ef6d] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (385)
May-11 11:55:15.451 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1203; name: egapx:rnaseq_short_plane:bam2asn:convert (381); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/28/f480de567a97872c2a57089ad6a774]
May-11 11:55:15.453 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:55:15.453 [Task submitter] INFO  nextflow.Session - [10/b25abc] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (380)
May-11 11:55:20.454 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 8 -- tasks to be submitted are shown below
~> TaskHandler[id: 1198; name: egapx:rnaseq_short_plane:bam2asn:convert (376); status: NEW; exit: -; error: -; workDir: Ath_work2/d7/256afbc2e1c652b3e0348a3583d487]
~> TaskHandler[id: 1200; name: egapx:rnaseq_short_plane:bam2asn:convert (378); status: NEW; exit: -; error: -; workDir: Ath_work2/c1/cdeb97c566ffbfecf931465ebc8401]
~> TaskHandler[id: 1206; name: egapx:rnaseq_short_plane:bam2asn:convert (384); status: NEW; exit: -; error: -; workDir: Ath_work2/e6/35855af2eaa8c93ca07c63e473d6c7]
~> TaskHandler[id: 1191; name: egapx:rnaseq_short_plane:bam2asn:convert (369); status: NEW; exit: -; error: -; workDir: Ath_work2/8d/36c3f6c36e89d35a6ed9d35846d18a]
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: NEW; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1210; name: egapx:rnaseq_short_plane:bam2asn:convert (388); status: NEW; exit: -; error: -; workDir: Ath_work2/1b/e1309c5e9ddb0565bd07961ce43fb4]
~> TaskHandler[id: 1211; name: egapx:rnaseq_short_plane:bam2asn:convert (389); status: NEW; exit: -; error: -; workDir: Ath_work2/ec/5a5c392bb945018350c9863099c485]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: NEW; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 11:55:26.800 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1201; name: egapx:rnaseq_short_plane:bam2asn:convert (379); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/10/768f102ca90f614fbec7d419204977]
May-11 11:55:26.801 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:55:26.801 [Task submitter] INFO  nextflow.Session - [d7/256afb] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (376)
May-11 11:55:29.965 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1205; name: egapx:rnaseq_short_plane:bam2asn:convert (383); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/65/da3c85209579e4002399c644467bb3]
May-11 11:55:29.966 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:55:29.966 [Task submitter] INFO  nextflow.Session - [c1/cdeb97] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (378)
May-11 11:55:32.320 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1207; name: egapx:rnaseq_short_plane:bam2asn:convert (385); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6d/c5ef6d16243af974fb5330d047e401]
May-11 11:55:32.323 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:55:32.323 [Task submitter] INFO  nextflow.Session - [e6/35855a] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (384)
May-11 11:55:43.871 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1202; name: egapx:rnaseq_short_plane:bam2asn:convert (380); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/10/b25abccbab82b15a2210461744a7ec]
May-11 11:55:43.874 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:55:43.874 [Task submitter] INFO  nextflow.Session - [8d/36c3f6] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (369)
May-11 11:55:50.122 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1190; name: egapx:rnaseq_short_plane:bam2asn:convert (368); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/03/6bdc532d4875ff65c169710e19890a]
May-11 11:55:50.123 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:55:50.123 [Task submitter] INFO  nextflow.Session - [83/6e2029] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (156)
May-11 11:56:01.502 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1198; name: egapx:rnaseq_short_plane:bam2asn:convert (376); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/d7/256afbc2e1c652b3e0348a3583d487]
May-11 11:56:01.503 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:56:01.503 [Task submitter] INFO  nextflow.Session - [1b/e1309c] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (388)
May-11 11:56:06.987 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1200; name: egapx:rnaseq_short_plane:bam2asn:convert (378); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/c1/cdeb97c566ffbfecf931465ebc8401]
May-11 11:56:06.989 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:56:06.989 [Task submitter] INFO  nextflow.Session - [ec/5a5c39] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (389)
May-11 11:56:11.178 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1057; name: egapx:rnaseq_short_plane:bam2asn:convert (235); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/6f/580b049d6462d64e9c35861286d8ef]
May-11 11:56:11.180 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 11:56:11.180 [Task submitter] INFO  nextflow.Session - [ab/e33132] Submitted process > egapx:rnaseq_short_plane:bam2asn:convert (387)
May-11 11:56:19.918 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1210; name: egapx:rnaseq_short_plane:bam2asn:convert (388); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/1b/e1309c5e9ddb0565bd07961ce43fb4]
May-11 11:56:20.632 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1206; name: egapx:rnaseq_short_plane:bam2asn:convert (384); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/e6/35855af2eaa8c93ca07c63e473d6c7]
May-11 11:56:23.023 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1211; name: egapx:rnaseq_short_plane:bam2asn:convert (389); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ec/5a5c392bb945018350c9863099c485]
May-11 11:57:12.667 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1191; name: egapx:rnaseq_short_plane:bam2asn:convert (369); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/8d/36c3f6c36e89d35a6ed9d35846d18a]
May-11 11:58:37.398 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 12:03:37.451 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 12:08:37.502 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 12:13:37.514 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 12:18:37.605 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 12:23:37.608 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 12:28:37.704 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 12:33:37.708 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 12:38:37.710 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 12:43:37.802 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 12:48:37.893 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 12:53:37.895 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 12:58:37.897 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 13:03:37.899 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 13:08:37.983 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 13:13:37.984 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 13:18:38.082 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 13:23:38.170 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 13:28:38.267 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 13:33:38.268 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 13:38:38.360 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 13:43:38.450 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 13:48:38.513 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 13:53:38.608 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 13:58:38.610 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 14:03:38.611 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 14:08:38.683 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 14:13:38.685 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 14:18:38.775 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 14:23:38.857 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 14:28:38.957 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 14:33:39.046 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 14:38:39.125 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 14:43:39.143 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 14:48:39.144 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 14:53:39.147 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 14:58:39.237 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 15:03:39.333 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 15:08:39.399 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 15:13:39.494 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 15:18:39.580 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 15:23:39.672 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 15:28:39.678 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: RUNNING; exit: -; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 15:30:07.213 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 978; name: egapx:rnaseq_short_plane:bam2asn:convert (156); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/83/6e2029626d24d869cecef1ab4dd668]
May-11 15:33:39.762 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 15:38:39.861 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: RUNNING; exit: -; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 15:39:41.882 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1209; name: egapx:rnaseq_short_plane:bam2asn:convert (387); status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/ab/e331320b20db74fdfaec5e375475fa]
May-11 15:39:48.693 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:39:48.693 [Task submitter] INFO  nextflow.Session - [73/58dee9] Submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:generate_jobs
May-11 15:39:58.213 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1212; name: egapx:rnaseq_short_plane:rnaseq_collapse:generate_jobs; status: COMPLETED; exit: 0; error: -; workDir: Ath_work2/73/58dee9d28aa8771861605541d58ee9]
May-11 15:40:38.995 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:40:38.995 [Task submitter] INFO  nextflow.Session - [e5/4e3be9] Submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (9)
May-11 15:40:39.018 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:40:39.018 [Task submitter] INFO  nextflow.Session - [5f/994c23] Submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3)
May-11 15:40:39.040 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:40:39.040 [Task submitter] INFO  nextflow.Session - [16/0ecbf9] Submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (1)
May-11 15:40:39.063 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:40:39.063 [Task submitter] INFO  nextflow.Session - [9a/647971] Submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (10)
May-11 15:40:39.086 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:40:39.086 [Task submitter] INFO  nextflow.Session - [1a/25a8e7] Submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (4)
May-11 15:40:39.108 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:40:39.109 [Task submitter] INFO  nextflow.Session - [d6/759e21] Submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (6)
May-11 15:40:39.109 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below
~> TaskHandler[id: 1220; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (8); status: NEW; exit: -; error: -; workDir: Ath_work2/9e/581ccefa3428dd691faea808471695]
~> TaskHandler[id: 1219; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (7); status: NEW; exit: -; error: -; workDir: Ath_work2/15/749b9d1448f0bfa1a0ec2d2a4e4a1c]
~> TaskHandler[id: 1217; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (5); status: NEW; exit: -; error: -; workDir: Ath_work2/59/ace2e5331234eeed4d255f583099db]
~> TaskHandler[id: 1214; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (2); status: NEW; exit: -; error: -; workDir: Ath_work2/de/f0fc22d4fe25ed8d781ccd2b049940]
May-11 15:40:47.633 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1221; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (9); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/e5/4e3be9fe7444a668c3f26e8349e9f2]
May-11 15:40:47.636 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (9); work-dir=Ath_work2/e5/4e3be9fe7444a668c3f26e8349e9f2
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (9)` terminated with an error exit status (139)
May-11 15:40:47.643 [Task monitor] INFO  nextflow.processor.TaskProcessor - [e5/4e3be9] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (9)` terminated with an error exit status (139) -- Execution is retried (1)
May-11 15:40:47.646 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1215; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/5f/994c232445cf2edefc11fb48b558ac]
May-11 15:40:47.646 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3); work-dir=Ath_work2/5f/994c232445cf2edefc11fb48b558ac
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3)` terminated with an error exit status (139)
May-11 15:40:47.646 [Task monitor] INFO  nextflow.processor.TaskProcessor - [5f/994c23] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3)` terminated with an error exit status (139) -- Execution is retried (1)
May-11 15:40:47.647 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1213; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (1); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/16/0ecbf98b32247fb0ab0ad2040bd0f5]
May-11 15:40:47.647 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (1); work-dir=Ath_work2/16/0ecbf98b32247fb0ab0ad2040bd0f5
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (1)` terminated with an error exit status (139)
May-11 15:40:47.647 [Task monitor] INFO  nextflow.processor.TaskProcessor - [16/0ecbf9] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (1)` terminated with an error exit status (139) -- Execution is retried (1)
May-11 15:40:47.648 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1222; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (10); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/9a/647971bcacc582d645a15e64a059c0]
May-11 15:40:47.648 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (10); work-dir=Ath_work2/9a/647971bcacc582d645a15e64a059c0
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (10)` terminated with an error exit status (139)
May-11 15:40:47.648 [Task monitor] INFO  nextflow.processor.TaskProcessor - [9a/647971] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (10)` terminated with an error exit status (139) -- Execution is retried (1)
May-11 15:40:47.649 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1216; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (4); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/1a/25a8e777ae7386aac6c3725d76531a]
May-11 15:40:47.649 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (4); work-dir=Ath_work2/1a/25a8e777ae7386aac6c3725d76531a
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (4)` terminated with an error exit status (139)
May-11 15:40:47.649 [Task monitor] INFO  nextflow.processor.TaskProcessor - [1a/25a8e7] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (4)` terminated with an error exit status (139) -- Execution is retried (1)
May-11 15:40:47.650 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1218; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (6); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/d6/759e214c766cf007707cce5e775541]
May-11 15:40:47.650 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (6); work-dir=Ath_work2/d6/759e214c766cf007707cce5e775541
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (6)` terminated with an error exit status (139)
May-11 15:40:47.650 [Task monitor] INFO  nextflow.processor.TaskProcessor - [d6/759e21] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (6)` terminated with an error exit status (139) -- Execution is retried (1)
May-11 15:40:47.661 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:40:47.661 [Task submitter] INFO  nextflow.Session - [9e/581cce] Submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (8)
May-11 15:40:47.688 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:40:47.689 [Task submitter] INFO  nextflow.Session - [15/749b9d] Submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (7)
May-11 15:40:47.715 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:40:47.716 [Task submitter] INFO  nextflow.Session - [59/ace2e5] Submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (5)
May-11 15:40:47.739 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:40:47.739 [Task submitter] INFO  nextflow.Session - [de/f0fc22] Submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (2)
May-11 15:40:47.777 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:40:47.777 [Task submitter] INFO  nextflow.Session - [f8/64d408] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (9)
May-11 15:40:47.800 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:40:47.800 [Task submitter] INFO  nextflow.Session - [bb/91b402] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3)
May-11 15:40:55.447 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1224; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/bb/91b402bccf03dd520c73fb9e3d23bc]
May-11 15:40:55.447 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3); work-dir=Ath_work2/bb/91b402bccf03dd520c73fb9e3d23bc
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3)` terminated with an error exit status (139)
May-11 15:40:55.448 [Task monitor] INFO  nextflow.processor.TaskProcessor - [bb/91b402] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3)` terminated with an error exit status (139) -- Execution is retried (2)
May-11 15:40:55.470 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:40:55.470 [Task submitter] INFO  nextflow.Session - [c3/718e7f] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (1)
May-11 15:40:55.494 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1219; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (7); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/15/749b9d1448f0bfa1a0ec2d2a4e4a1c]
May-11 15:40:55.494 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (7); work-dir=Ath_work2/15/749b9d1448f0bfa1a0ec2d2a4e4a1c
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (7)` terminated with an error exit status (139)
May-11 15:40:55.494 [Task monitor] INFO  nextflow.processor.TaskProcessor - [15/749b9d] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (7)` terminated with an error exit status (139) -- Execution is retried (1)
May-11 15:40:55.510 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1220; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (8); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/9e/581ccefa3428dd691faea808471695]
May-11 15:40:55.510 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (8); work-dir=Ath_work2/9e/581ccefa3428dd691faea808471695
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (8)` terminated with an error exit status (139)
May-11 15:40:55.510 [Task monitor] INFO  nextflow.processor.TaskProcessor - [9e/581cce] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (8)` terminated with an error exit status (139) -- Execution is retried (1)
May-11 15:40:55.511 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1214; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (2); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/de/f0fc22d4fe25ed8d781ccd2b049940]
May-11 15:40:55.511 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (2); work-dir=Ath_work2/de/f0fc22d4fe25ed8d781ccd2b049940
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (2)` terminated with an error exit status (139)
May-11 15:40:55.511 [Task monitor] INFO  nextflow.processor.TaskProcessor - [de/f0fc22] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (2)` terminated with an error exit status (139) -- Execution is retried (1)
May-11 15:40:55.518 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:40:55.519 [Task submitter] INFO  nextflow.Session - [9d/5d3d21] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (10)
May-11 15:40:55.519 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1223; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (9); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/f8/64d4087a64408a67ac34f607a63cb1]
May-11 15:40:55.519 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (9); work-dir=Ath_work2/f8/64d4087a64408a67ac34f607a63cb1
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (9)` terminated with an error exit status (139)
May-11 15:40:55.519 [Task monitor] INFO  nextflow.processor.TaskProcessor - [f8/64d408] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (9)` terminated with an error exit status (139) -- Execution is retried (2)
May-11 15:40:55.542 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:40:55.542 [Task submitter] INFO  nextflow.Session - [7a/75410e] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (4)
May-11 15:40:55.564 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:40:55.564 [Task submitter] INFO  nextflow.Session - [d7/93af7e] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (6)
May-11 15:40:55.587 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:40:55.587 [Task submitter] INFO  nextflow.Session - [ce/243806] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3)
May-11 15:40:55.619 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1217; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (5); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/59/ace2e5331234eeed4d255f583099db]
May-11 15:40:55.619 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (5); work-dir=Ath_work2/59/ace2e5331234eeed4d255f583099db
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (5)` terminated with an error exit status (139)
May-11 15:40:55.620 [Task monitor] INFO  nextflow.processor.TaskProcessor - [59/ace2e5] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (5)` terminated with an error exit status (139) -- Execution is retried (1)
May-11 15:40:55.642 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:40:55.642 [Task submitter] INFO  nextflow.Session - [bc/5d8b67] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (7)
May-11 15:41:03.280 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1226; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (10); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/9d/5d3d21e390e1bccd2783f5729d7e93]
May-11 15:41:03.280 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (10); work-dir=Ath_work2/9d/5d3d21e390e1bccd2783f5729d7e93
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (10)` terminated with an error exit status (139)
May-11 15:41:03.280 [Task monitor] INFO  nextflow.processor.TaskProcessor - [9d/5d3d21] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (10)` terminated with an error exit status (139) -- Execution is retried (2)
May-11 15:41:03.307 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:41:03.307 [Task submitter] INFO  nextflow.Session - [c9/c51961] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (8)
May-11 15:41:03.457 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1230; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (7); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/bc/5d8b6706068137934765c1bc4667f7]
May-11 15:41:03.457 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (7); work-dir=Ath_work2/bc/5d8b6706068137934765c1bc4667f7
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (7)` terminated with an error exit status (139)
May-11 15:41:03.458 [Task monitor] INFO  nextflow.processor.TaskProcessor - [bc/5d8b67] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (7)` terminated with an error exit status (139) -- Execution is retried (2)
May-11 15:41:03.468 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1225; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (1); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/c3/718e7f288652adc6c7d21f1d8bd182]
May-11 15:41:03.468 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (1); work-dir=Ath_work2/c3/718e7f288652adc6c7d21f1d8bd182
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (1)` terminated with an error exit status (139)
May-11 15:41:03.468 [Task monitor] INFO  nextflow.processor.TaskProcessor - [c3/718e7f] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (1)` terminated with an error exit status (139) -- Execution is retried (2)
May-11 15:41:03.469 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1229; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/ce/2438064f7e6b71760218d19661cf50]
May-11 15:41:03.469 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3); work-dir=Ath_work2/ce/2438064f7e6b71760218d19661cf50
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3)` terminated with an error exit status (139)
May-11 15:41:03.469 [Task monitor] INFO  nextflow.processor.TaskProcessor - [ce/243806] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3)` terminated with an error exit status (139) -- Execution is retried (3)
May-11 15:41:03.470 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1228; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (6); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/d7/93af7eaa1269fcd09b4ab1c5fa5310]
May-11 15:41:03.470 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (6); work-dir=Ath_work2/d7/93af7eaa1269fcd09b4ab1c5fa5310
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (6)` terminated with an error exit status (139)
May-11 15:41:03.470 [Task monitor] INFO  nextflow.processor.TaskProcessor - [d7/93af7e] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (6)` terminated with an error exit status (139) -- Execution is retried (2)
May-11 15:41:03.480 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:41:03.480 [Task submitter] INFO  nextflow.Session - [9f/534e63] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (2)
May-11 15:41:03.503 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:41:03.503 [Task submitter] INFO  nextflow.Session - [be/55750c] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (9)
May-11 15:41:03.531 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:41:03.531 [Task submitter] INFO  nextflow.Session - [50/c4c898] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (5)
May-11 15:41:03.532 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1227; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (4); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/7a/75410e700fd38954da39c04de37159]
May-11 15:41:03.532 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (4); work-dir=Ath_work2/7a/75410e700fd38954da39c04de37159
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (4)` terminated with an error exit status (139)
May-11 15:41:03.533 [Task monitor] INFO  nextflow.processor.TaskProcessor - [7a/75410e] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (4)` terminated with an error exit status (139) -- Execution is retried (2)
May-11 15:41:03.594 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:41:03.594 [Task submitter] INFO  nextflow.Session - [b1/5e1a27] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (10)
May-11 15:41:03.618 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:41:03.618 [Task submitter] INFO  nextflow.Session - [c9/236e24] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (7)
May-11 15:41:11.151 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1231; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (8); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/c9/c5196152babe5e7a04ad0ce6cfb3cb]
May-11 15:41:11.151 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (8); work-dir=Ath_work2/c9/c5196152babe5e7a04ad0ce6cfb3cb
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (8)` terminated with an error exit status (139)
May-11 15:41:11.152 [Task monitor] INFO  nextflow.processor.TaskProcessor - [c9/c51961] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (8)` terminated with an error exit status (139) -- Execution is retried (2)
May-11 15:41:11.175 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:41:11.175 [Task submitter] INFO  nextflow.Session - [b2/8967c3] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (1)
May-11 15:41:11.870 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1232; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (2); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/9f/534e6358fb665089357e6c938137e2]
May-11 15:41:11.870 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (2); work-dir=Ath_work2/9f/534e6358fb665089357e6c938137e2
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (2)` terminated with an error exit status (139)
May-11 15:41:11.871 [Task monitor] INFO  nextflow.processor.TaskProcessor - [9f/534e63] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (2)` terminated with an error exit status (139) -- Execution is retried (2)
May-11 15:41:11.893 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:41:11.893 [Task submitter] INFO  nextflow.Session - [51/14e36b] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3)
May-11 15:41:11.897 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1234; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (5); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/50/c4c89827e9a9c01b01f7fd0b6f9ce3]
May-11 15:41:11.897 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (5); work-dir=Ath_work2/50/c4c89827e9a9c01b01f7fd0b6f9ce3
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (5)` terminated with an error exit status (139)
May-11 15:41:11.897 [Task monitor] INFO  nextflow.processor.TaskProcessor - [50/c4c898] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (5)` terminated with an error exit status (139) -- Execution is retried (2)
May-11 15:41:11.919 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:41:11.919 [Task submitter] INFO  nextflow.Session - [49/36ac7b] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (6)
May-11 15:41:12.027 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1235; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (10); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/b1/5e1a2731c015bbdb6cd4b597f8a9be]
May-11 15:41:12.027 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (10); work-dir=Ath_work2/b1/5e1a2731c015bbdb6cd4b597f8a9be
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (10)` terminated with an error exit status (139)
May-11 15:41:12.028 [Task monitor] INFO  nextflow.processor.TaskProcessor - [b1/5e1a27] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (10)` terminated with an error exit status (139) -- Execution is retried (3)
May-11 15:41:12.036 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1233; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (9); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/be/55750c287213b3081b25e39c7f6ea5]
May-11 15:41:12.036 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (9); work-dir=Ath_work2/be/55750c287213b3081b25e39c7f6ea5
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (9)` terminated with an error exit status (139)
May-11 15:41:12.036 [Task monitor] INFO  nextflow.processor.TaskProcessor - [be/55750c] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (9)` terminated with an error exit status (139) -- Execution is retried (3)
May-11 15:41:12.038 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1236; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (7); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/c9/236e245f904e741fe04ec78b6772c0]
May-11 15:41:12.038 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (7); work-dir=Ath_work2/c9/236e245f904e741fe04ec78b6772c0
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (7)` terminated with an error exit status (139)
May-11 15:41:12.039 [Task monitor] INFO  nextflow.processor.TaskProcessor - [c9/236e24] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (7)` terminated with an error exit status (139) -- Execution is retried (3)
May-11 15:41:12.051 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:41:12.051 [Task submitter] INFO  nextflow.Session - [56/8141bf] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (4)
May-11 15:41:12.074 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:41:12.074 [Task submitter] INFO  nextflow.Session - [42/e3dbce] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (8)
May-11 15:41:12.097 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:41:12.097 [Task submitter] INFO  nextflow.Session - [b3/9c3428] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (2)
May-11 15:41:18.493 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1237; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (1); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/b2/8967c391c321ba9bd932e7908e7187]
May-11 15:41:18.493 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (1); work-dir=Ath_work2/b2/8967c391c321ba9bd932e7908e7187
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (1)` terminated with an error exit status (139)
May-11 15:41:18.494 [Task monitor] INFO  nextflow.processor.TaskProcessor - [b2/8967c3] NOTE: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (1)` terminated with an error exit status (139) -- Execution is retried (3)
May-11 15:41:18.516 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:41:18.516 [Task submitter] INFO  nextflow.Session - [02/150d4e] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (5)
May-11 15:41:19.316 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1238; name: egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3); status: COMPLETED; exit: 139; error: -; workDir: Ath_work2/51/14e36b26b69102663af77731239d2a]
May-11 15:41:19.316 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3); work-dir=Ath_work2/51/14e36b26b69102663af77731239d2a
  error [nextflow.exception.ProcessFailedException]: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3)` terminated with an error exit status (139)
May-11 15:41:19.327 [Task monitor] ERROR nextflow.processor.TaskProcessor - Error executing process > 'egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3)'

Caused by:
  Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3)` terminated with an error exit status (139)

Command executed:

  echo "Ath-bin1.align_counts.txt
  Ath-bin10.align_counts.txt
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  Ath-bin99.align_counts.txt" > scaffold_list.mft
      echo "Ath-bin1.align.asnb.gz
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  Ath-bin99.align.asnb.gz" > align.mft
      echo "sra_metadata.dat" > metadata.mft
  
      # HACK: derive start_job_id from job file extension
      filename=$(basename -- "job.002")
      extension="${filename##*.}"
      # NB: for successful gather phase all job id should be unique,
      # so we must supply start_job_id.
      (( start_job_id = ((10#$extension) * 129) + 1 ))
  
      mkdir -p tmp
      # make the local LDS of the genomic sequences
      lds2_indexer -source ./genome -db tmp/genome_lds  
    
      mkdir -p tmp/interim
      rnaseq_collapse -backlog 1 -max-jobs 1 -support-non-sra -O tmp/interim -nogenbank -lds2 tmp/genome_lds -sorted-vols align.mft -scaffold-list scaffold_list.mft -sra-metadata-manifest metadata.mft -start-job-id $start_job_id -input-jobs job.002 -workers 16
  
      mkdir -p output
      cat tmp/interim/* > output/rnaseq_collapse.3.gpx-job.asnb
      rm -rf tmp

Command exit status:
  139

Command output:
  (empty)

Command error:
  14adfea38000-14adfea3b000 rw-p 00000000 00:00 0 
  14adfec00000-14adfec53000 r-xp 00000000 00:16 1508000520                 /img/gp/arch/x86_64/lib/libgpxlib_core.so
  14adfec53000-14adfee52000 ---p 00053000 00:16 1508000520                 /img/gp/arch/x86_64/lib/libgpxlib_core.so
  14adfee52000-14adfee54000 r--p 00052000 00:16 1508000520                 /img/gp/arch/x86_64/lib/libgpxlib_core.so
  14adfee54000-14adfee55000 rw-p 00054000 00:16 1508000520                 /img/gp/arch/x86_64/lib/libgpxlib_core.so
  14adfee55000-14adfee58000 rw-p 00000000 00:00 0 
  14adff000000-14adff063000 r-xp 00000000 00:16 1507977884                 /img/gp/arch/x86_64/lib/libgpxlib.so
  14adff063000-14adff262000 ---p 00063000 00:16 1507977884                 /img/gp/arch/x86_64/lib/libgpxlib.so
  14adff262000-14adff264000 r--p 00062000 00:16 1507977884                 /img/gp/arch/x86_64/lib/libgpxlib.so
  14adff264000-14adff265000 rw-p 00064000 00:16 1507977884                 /img/gp/arch/x86_64/lib/libgpxlib.so
  14adff265000-14adff268000 rw-p 00000000 00:00 0 
  14adff400000-14adff404000 r-xp 00000000 00:16 1508178247                 /img/root/lib/libSegFault.so
  14adff404000-14adff603000 ---p 00004000 00:16 1508178247                 /img/root/lib/libSegFault.so
  14adff603000-14adff604000 r--p 00003000 00:16 1508178247                 /img/root/lib/libSegFault.so
  14adff604000-14adff606000 rw-p 00004000 00:16 1508178247                 /img/root/lib/libSegFault.so
  14adff660000-14adff6d2000 rw-p 00000000 00:00 0 
  14adff6d2000-14adff6e2000 r--p 00000000 00:16 1508133090                 /usr/lib/x86_64-linux-gnu/libm.so.6
  14adff6e2000-14adff761000 r-xp 00010000 00:16 1508133090                 /usr/lib/x86_64-linux-gnu/libm.so.6
  14adff761000-14adff7b9000 r--p 0008f000 00:16 1508133090                 /usr/lib/x86_64-linux-gnu/libm.so.6
  14adff7b9000-14adff7ba000 r--p 000e7000 00:16 1508133090                 /usr/lib/x86_64-linux-gnu/libm.so.6
  14adff7ba000-14adff7bb000 rw-p 000e8000 00:16 1508133090                 /usr/lib/x86_64-linux-gnu/libm.so.6
  14adff7bb000-14adff7bf000 rw-p 00000000 00:00 0 
  14adff7bf000-14adff7c0000 r--p 00000000 00:16 1508279236                 /usr/lib/x86_64-linux-gnu/libpthread.so.0
  14adff7c0000-14adff7c1000 r-xp 00001000 00:16 1508279236                 /usr/lib/x86_64-linux-gnu/libpthread.so.0
  14adff7c1000-14adff7c2000 r--p 00002000 00:16 1508279236                 /usr/lib/x86_64-linux-gnu/libpthread.so.0
  14adff7c2000-14adff7c3000 r--p 00002000 00:16 1508279236                 /usr/lib/x86_64-linux-gnu/libpthread.so.0
  14adff7c3000-14adff7c4000 rw-p 00003000 00:16 1508279236                 /usr/lib/x86_64-linux-gnu/libpthread.so.0
  14adff7c4000-14adff7c6000 rw-p 00000000 00:00 0 
  14adff7c6000-14adff7c7000 r--p 00000000 00:16 1508279254                 /usr/lib/x86_64-linux-gnu/librt.so.1
  14adff7c7000-14adff7c8000 r-xp 00001000 00:16 1508279254                 /usr/lib/x86_64-linux-gnu/librt.so.1
  14adff7c8000-14adff7c9000 r--p 00002000 00:16 1508279254                 /usr/lib/x86_64-linux-gnu/librt.so.1
  14adff7c9000-14adff7ca000 r--p 00002000 00:16 1508279254                 /usr/lib/x86_64-linux-gnu/librt.so.1
  14adff7ca000-14adff7cb000 rw-p 00003000 00:16 1508279254                 /usr/lib/x86_64-linux-gnu/librt.so.1
  14adff7cb000-14adff7cc000 r--p 00000000 00:16 1508272243                 /usr/lib/x86_64-linux-gnu/libdl.so.2
  14adff7cc000-14adff7cd000 r-xp 00001000 00:16 1508272243                 /usr/lib/x86_64-linux-gnu/libdl.so.2
  14adff7cd000-14adff7ce000 r--p 00002000 00:16 1508272243                 /usr/lib/x86_64-linux-gnu/libdl.so.2
  14adff7ce000-14adff7cf000 r--p 00002000 00:16 1508272243                 /usr/lib/x86_64-linux-gnu/libdl.so.2
  14adff7cf000-14adff7d0000 rw-p 00003000 00:16 1508272243                 /usr/lib/x86_64-linux-gnu/libdl.so.2
  14adff7d1000-14adff7fe000 rw-p 00000000 00:00 0 
  14adff7fe000-14adff7ff000 r--p 00000000 00:16 1508039341                 /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2
  14adff7ff000-14adff82a000 r-xp 00001000 00:16 1508039341                 /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2
  14adff82a000-14adff834000 r--p 0002c000 00:16 1508039341                 /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2
  14adff834000-14adff836000 r--p 00036000 00:16 1508039341                 /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2
  14adff836000-14adff838000 rw-p 00038000 00:16 1508039341                 /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2
  7fff7c11c000-7fff7c13e000 rw-p 00000000 00:00 0                          [stack]
  7fff7c13e000-7fff7c142000 r--p 00000000 00:00 0                          [vvar]
  7fff7c142000-7fff7c144000 r-xp 00000000 00:00 0                          [vdso]
  ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0                  [vsyscall]
  .command.sh: line 794:    95 Segmentation fault      (core dumped) rnaseq_collapse -backlog 1 -max-jobs 1 -support-non-sra -O tmp/interim -nogenbank -lds2 tmp/genome_lds -sorted-vols align.mft -scaffold-list scaffold_list.mft -sra-metadata-manifest metadata.mft -start-job-id $start_job_id -input-jobs job.002 -workers 16
  INFO:    Cleaning up image...

Work dir:
  Ath_work2/51/14e36b26b69102663af77731239d2a

Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`
May-11 15:41:19.329 [Task monitor] DEBUG nextflow.Session - Session aborted -- Cause: Process `egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (3)` terminated with an error exit status (139)
May-11 15:41:19.337 [Task monitor] DEBUG nextflow.Session - The following nodes are still active:
[process] egapx:rnaseq_short_plane:rnaseq_collapse:run_gpx_make_outputs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_align_sort:run_align_sort
  status=ACTIVE
  port 0: (value) bound ; channel: genome
  port 1: (value) bound ; channel: proteins
  port 2: (queue) OPEN  ; channel: alignments
  port 3: (value) bound ; channel: parameters
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:generate_jobs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: sort_aligns
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:run_chainer
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: job
  port 1: (value) OPEN  ; channel: alignments
  port 2: (value) bound ; channel: hmm_params
  port 3: (value) bound ; channel: evidence_denylist
  port 4: (value) bound ; channel: gap_fill_allowlist
  port 5: (value) bound ; channel: scaffolds
  port 6: (value) bound ; channel: trusted_genes
  port 7: (value) bound ; channel: genome
  port 8: (value) bound ; channel: proteins_asn
  port 9: (value) OPEN  ; channel: lines_per_file
  port 10: (value) bound ; channel: params
  port 11: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:run_gpx_make_outputs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_wnode:gpx_qsubmit
  status=ACTIVE
  port 0: (value) bound ; channel: scaffolds
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) OPEN  ; channel: chains_slices
  port 3: (value) bound ; channel: params
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_wnode:annot
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: jobs
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) bound ; channel: hmm_params
  port 3: (value) bound ; channel: softmask_lds2
  port 4: (value) bound ; channel: softmask
  port 5: (value) bound ; channel: genome
  port 6: (value) bound ; channel: proteins_asn
  port 7: (value) OPEN  ; channel: lines_per_file
  port 8: (value) bound ; channel: params
  port 9: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_wnode:gpx_qdump
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_training:run_gnomon_training
  status=ACTIVE
  port 0: (value) bound ; channel: genome_asn
  port 1: (value) OPEN  ; channel: models_file
  port 2: (value) bound ; channel: max_intron1
  port 3: (value) bound ; channel: parameters
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:generate_jobs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: sort_aligns
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:run_chainer
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: job
  port 1: (value) OPEN  ; channel: alignments
  port 2: (value) OPEN  ; channel: hmm_params
  port 3: (value) bound ; channel: evidence_denylist
  port 4: (value) bound ; channel: gap_fill_allowlist
  port 5: (value) bound ; channel: scaffolds
  port 6: (value) bound ; channel: trusted_genes
  port 7: (value) bound ; channel: genome
  port 8: (value) bound ; channel: proteins_asn
  port 9: (value) OPEN  ; channel: lines_per_file
  port 10: (value) bound ; channel: params
  port 11: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:chainer:run_gpx_make_outputs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_wnode:gpx_qsubmit
  status=ACTIVE
  port 0: (value) bound ; channel: scaffolds
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) OPEN  ; channel: chains_slices
  port 3: (value) bound ; channel: params
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_wnode:annot
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: jobs
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) OPEN  ; channel: hmm_params
  port 3: (value) bound ; channel: softmask_lds2
  port 4: (value) bound ; channel: softmask
  port 5: (value) bound ; channel: genome
  port 6: (value) bound ; channel: proteins_asn
  port 7: (value) OPEN  ; channel: lines_per_file
  port 8: (value) bound ; channel: params
  port 9: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_wnode:gpx_qdump
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration2:gnomon_training:run_gnomon_training
  status=ACTIVE
  port 0: (value) bound ; channel: genome_asn
  port 1: (value) OPEN  ; channel: models_file
  port 2: (value) bound ; channel: max_intron1
  port 3: (value) bound ; channel: parameters
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:generate_jobs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: sort_aligns
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:run_chainer
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: job
  port 1: (value) OPEN  ; channel: alignments
  port 2: (value) OPEN  ; channel: hmm_params
  port 3: (value) bound ; channel: evidence_denylist
  port 4: (value) bound ; channel: gap_fill_allowlist
  port 5: (value) bound ; channel: scaffolds
  port 6: (value) bound ; channel: trusted_genes
  port 7: (value) bound ; channel: genome
  port 8: (value) bound ; channel: proteins_asn
  port 9: (value) OPEN  ; channel: lines_per_file
  port 10: (value) bound ; channel: params
  port 11: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:chainer:run_gpx_make_outputs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_wnode:gpx_qsubmit
  status=ACTIVE
  port 0: (value) bound ; channel: scaffolds
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) OPEN  ; channel: chains_slices
  port 3: (value) bound ; channel: params
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_wnode:annot
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: jobs
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) OPEN  ; channel: hmm_params
  port 3: (value) bound ; channel: softmask_lds2
  port 4: (value) bound ; channel: softmask
  port 5: (value) bound ; channel: genome
  port 6: (value) bound ; channel: proteins_asn
  port 7: (value) OPEN  ; channel: lines_per_file
  port 8: (value) bound ; channel: params
  port 9: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_wnode:gpx_qdump
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_training:run_gnomon_training
  status=ACTIVE
  port 0: (value) bound ; channel: genome_asn
  port 1: (value) OPEN  ; channel: models_file
  port 2: (value) bound ; channel: max_intron1
  port 3: (value) bound ; channel: parameters
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:generate_jobs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: sort_aligns
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:run_chainer
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: job
  port 1: (value) OPEN  ; channel: alignments
  port 2: (value) OPEN  ; channel: hmm_params
  port 3: (value) bound ; channel: evidence_denylist
  port 4: (value) bound ; channel: gap_fill_allowlist
  port 5: (value) bound ; channel: scaffolds
  port 6: (value) bound ; channel: trusted_genes
  port 7: (value) bound ; channel: genome
  port 8: (value) bound ; channel: proteins_asn
  port 9: (value) OPEN  ; channel: lines_per_file
  port 10: (value) bound ; channel: params
  port 11: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:chainer:run_gpx_make_outputs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_wnode:gpx_qsubmit
  status=ACTIVE
  port 0: (value) bound ; channel: scaffolds
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) OPEN  ; channel: chains_slices
  port 3: (value) bound ; channel: params
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_wnode:annot
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: jobs
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) OPEN  ; channel: hmm_params
  port 3: (value) bound ; channel: softmask_lds2
  port 4: (value) bound ; channel: softmask
  port 5: (value) bound ; channel: genome
  port 6: (value) bound ; channel: proteins_asn
  port 7: (value) OPEN  ; channel: lines_per_file
  port 8: (value) bound ; channel: params
  port 9: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_wnode:gpx_qdump
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration4:gnomon_training:run_gnomon_training
  status=ACTIVE
  port 0: (value) bound ; channel: genome_asn
  port 1: (value) OPEN  ; channel: models_file
  port 2: (value) bound ; channel: max_intron1
  port 3: (value) bound ; channel: parameters
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:chainer:generate_jobs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: sort_aligns
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:chainer:run_chainer
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: job
  port 1: (value) OPEN  ; channel: alignments
  port 2: (value) OPEN  ; channel: hmm_params
  port 3: (value) bound ; channel: evidence_denylist
  port 4: (value) bound ; channel: gap_fill_allowlist
  port 5: (value) bound ; channel: scaffolds
  port 6: (value) bound ; channel: trusted_genes
  port 7: (value) bound ; channel: genome
  port 8: (value) bound ; channel: proteins_asn
  port 9: (value) OPEN  ; channel: lines_per_file
  port 10: (value) bound ; channel: params
  port 11: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:chainer:run_gpx_make_outputs
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_wnode:gpx_qsubmit
  status=ACTIVE
  port 0: (value) bound ; channel: scaffolds
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) OPEN  ; channel: chains_slices
  port 3: (value) bound ; channel: params
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_wnode:annot
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: jobs
  port 1: (value) OPEN  ; channel: chains
  port 2: (value) OPEN  ; channel: hmm_params
  port 3: (value) bound ; channel: softmask_lds2
  port 4: (value) bound ; channel: softmask
  port 5: (value) bound ; channel: genome
  port 6: (value) bound ; channel: proteins_asn
  port 7: (value) OPEN  ; channel: lines_per_file
  port 8: (value) bound ; channel: params
  port 9: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_wnode:gpx_qdump
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_evidence_summary:generate_scaffolds
  status=ACTIVE
  port 0: (value) OPEN  ; channel: evidence
  port 1: (value) OPEN  ; channel: evidence_slices
  port 2: (value) OPEN  ; channel: gn_models
  port 3: (value) OPEN  ; channel: gn_models_slices
  port 4: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_evidence_summary:gpx_qsubmit
  status=ACTIVE
  port 0: (value) OPEN  ; channel: scaffolds
  port 1: (value) bound ; channel: genome_asn
  port 2: (value) bound ; channel: protein_asn
  port 3: (value) OPEN  ; channel: gn_models
  port 4: (value) bound ; channel: params
  port 5: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_evidence_summary:gnomon_report
  status=ACTIVE
  port 0: (queue) OPEN  ; channel: jobs
  port 1: (value) OPEN  ; channel: evidence
  port 2: (value) OPEN  ; channel: evidence_slices
  port 3: (value) OPEN  ; channel: gn_models
  port 4: (value) OPEN  ; channel: gn_models_slices
  port 5: (value) OPEN  ; channel: sra_exons
  port 6: (value) OPEN  ; channel: sra_exons_slices
  port 7: (value) bound ; channel: genome_asn
  port 8: (value) bound ; channel: protein_asn
  port 9: (value) OPEN  ; channel: lines_per_file
  port 10: (value) bound ; channel: taxid
  port 11: (value) bound ; channel: params
  port 12: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_evidence_summary:gpx_qdump
  status=ACTIVE
  port 0: (value) OPEN  ; channel: files
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_evidence_summary:create_reports
  status=ACTIVE
  port 0: (value) OPEN  ; channel: reports
  port 1: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_evidence_summary:gnomon_summary
  status=ACTIVE
  port 0: (value) OPEN  ; channel: gnomon_report
  port 1: (value) OPEN  ; channel: gnomon_quality_report
  port 2: (value) OPEN  ; channel: gn_models
  port 3: (value) bound ; channel: genome_asn
  port 4: (value) bound ; channel: protein_asn
  port 5: (value) bound ; channel: params
  port 6: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:prot_gnomon_prepare:prot_gnomon_prepare_p
  status=ACTIVE
  port 0: (value) OPEN  ; channel: models
  port 1: (value) bound ; channel: params
  port 2: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:diamond_worker:run_diamond_egap
  status=ACTIVE
  port 0: (value) OPEN  ; channel: gnomon_prot_ids
  port 1: (value) bound ; channel: swiss_prot_ids
  port 2: (value) OPEN  ; channel: gnomon_prot_asn
  port 3: (value) bound ; channel: swiss_prot_asn
  port 4: (value) bound ; channel: params
  port 5: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:best_protein_hits:run_protein_filter_replacement
  status=ACTIVE
  port 0: (value) OPEN  ; channel: gnomon_prot_asn
  port 1: (value) bound ; channel: swiss_prot_asn
  port 2: (value) OPEN  ; channel: input_prot_alignments
  port 3: (value) bound ; channel: align_filter_params
  port 4: (value) bound ; channel: align_sort_params
  port 5: (cntrl) -     ; channel: $

[process] egapx:gnomon_plane:gnomon_add_filtering_scores:gnomon_filter_models
  status=ACTIVE
  port 0: (value) OPEN  ; channel: naming_db_secondary_support
  port 1: (value) bound ; channel: search_set_secondary_support
  port 2: (value) bound ; channel: gnomon_filtering_scores_file
  port 3: (value) OPEN  ; channel: gnomon_quality_report
  port 4: (value) OPEN  ; channel: best_naming_hits
  port 5: (value) OPEN  ; channel: models
  port 6: (value) bound ; channel: swiss_prot_asn
  port 7: (value) bound ; channel: params
  port 8: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:gnomon_biotype:run_gnomon_biotype
  status=ACTIVE
  port 0: (value) OPEN  ; channel: models_files
  port 1: (value) bound ; channel: splices_files
  port 2: (value) bound ; channel: denylist
  port 3: (value) bound ; channel: gencoll_asn
  port 4: (value) bound ; channel: swiss_prot_asn
  port 5: (value) bound ; channel: lds2_source
  port 6: (value) OPEN  ; channel: raw_blastp_hits
  port 7: (value) bound ; channel: name_cleanup_rules_file
  port 8: (value) bound ; channel: lineage_taxids
  port 9: (value) bound ; channel: parameters
  port 10: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:annot_builder:annot_builder_run
  status=ACTIVE
  port 0: (value) bound ; channel: gencoll_asn
  port 1: (value) bound ; channel: genome_asn
  port 2: (value) OPEN  ; channel: gnomon_annots
  port 3: (value) bound ; channel: cmsearch_annots
  port 4: (value) bound ; channel: trna_annots
  port 5: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:orthology_plane:extract_products_from_models:run_extract_products_from_models
  status=ACTIVE
  port 0: (value) OPEN  ; channel: models
  port 1: (value) bound ; channel: parameters
  port 2: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:orthology_plane:diamond_orthology:run_diamond_egap
  status=ACTIVE
  port 0: (value) OPEN  ; channel: gnomon_prot_ids
  port 1: (value) bound ; channel: swiss_prot_ids
  port 2: (value) OPEN  ; channel: gnomon_prot_asn
  port 3: (value) bound ; channel: swiss_prot_asn
  port 4: (value) bound ; channel: params
  port 5: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:orthology_plane:find_orthologs:run_find_orthologs
  status=ACTIVE
  port 0: (value) bound ; channel: input_gencoll_asn
  port 1: (value) bound ; channel: ref_gencoll_asn
  port 2: (value) OPEN  ; channel: input_annotations
  port 3: (value) bound ; channel: ref_annotations
  port 4: (value) OPEN  ; channel: prot_hits
  port 5: (value) bound ; channel: blastdb
  port 6: (value) OPEN  ; channel: input_proteins_asn
  port 7: (value) bound ; channel: ref_proteins_asn
  port 8: (value) bound ; channel: input_genome_asn
  port 9: (value) bound ; channel: ref_genome_asn
  port 10: (value) bound ; channel: parameters
  port 11: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:locus_track:run_locus_track
  status=ACTIVE
  port 0: (value) OPEN  ; channel: annotation
  port 1: (value) bound ; channel: gencoll_asn
  port 2: (value) bound ; channel: lxr_data
  port 3: (value) bound ; channel: parameters
  port 4: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:locus_link:run_locus_link
  status=ACTIVE
  port 0: (value) bound ; channel: best_refseq_prot_hit
  port 1: (value) OPEN  ; channel: orthologs
  port 2: (value) OPEN  ; channel: annotation
  port 3: (value) bound ; channel: gencoll_asn
  port 4: (value) OPEN  ; channel: gnomon_lds2_source
  port 5: (value) OPEN  ; channel: best_prot_hit
  port 6: (value) OPEN  ; channel: track_loci
  port 7: (value) bound ; channel: comparisons
  port 8: (value) bound ; channel: curr_prev_compare
  port 9: (value) OPEN  ; channel: gnomon_biotypes
  port 10: (value) bound ; channel: lxr_data
  port 11: (value) bound ; channel: lineage_taxids
  port 12: (value) bound ; channel: name_cleanup_rules_file
  port 13: (value) bound ; channel: proteins_asn
  port 14: (value) bound ; channel: name_from_ortholog
  port 15: (value) bound ; channel: parameters
  port 16: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:final_asn_markup:final_asn
  status=ACTIVE
  port 0: (value) bound ; channel: assembly_name
  port 1: (value) bound ; channel: gencoll_asn
  port 2: (value) bound ; channel: genome_asn
  port 3: (value) bound ; channel: scaffolds
  port 4: (value) bound ; channel: chromosomes
  port 5: (value) OPEN  ; channel: annots
  port 6: (value) OPEN  ; channel: locus_link
  port 7: (value) OPEN  ; channel: locustypes
  port 8: (value) bound ; channel: params
  port 9: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:generate_fasta_from_annots:gnomon_asn2fasta
  status=ACTIVE
  port 0: (value) bound ; channel: gencoll_asn
  port 1: (value) OPEN  ; channel: scaffolds
  port 2: (value) bound ; channel: chromosomes
  port 3: (value) bound ; channel: params
  port 4: (cntrl) -     ; channel: $

[process] egapx:annot_proc_plane:annotwriter:run_annotwriter
  status=ACTIVE
  port 0: (value) OPEN  ; channel: accept_asn_file
  port 1: (cntrl) -     ; channel: $

[process] egapx:convert_annotations:run_converter
  status=ACTIVE
  port 0: (value) OPEN  ; channel: asn_files
  port 1: (value) bound ; channel: gff_params
  port 2: (value) bound ; channel: gtf_params
  port 3: (cntrl) -     ; channel: $

[process] egapx:convert_summary_files:run_convert_summary_files
  status=ACTIVE
  port 0: (value) OPEN  ; channel: report
  port 1: (value) OPEN  ; channel: quality_report
  port 2: (value) OPEN  ; channel: locustypes
  port 3: (value) bound ; channel: locus_tag_prefix
  port 4: (cntrl) -     ; channel: $

[process] egapx:busco:run_busco
  status=ACTIVE
  port 0: (value) OPEN  ; channel: proteins
  port 1: (value) bound ; channel: lineage
  port 2: (value) bound ; channel: lineage_download
  port 3: (value) bound ; channel: parameters
  port 4: (cntrl) -     ; channel: $

[process] export
  status=ACTIVE
  port 0: (value) OPEN  ; channel: genomic_gff
  port 1: (value) OPEN  ; channel: genomic_gtf
  port 2: (value) OPEN  ; channel: genomic_fasta
  port 3: (value) OPEN  ; channel: transcript_fasta
  port 4: (value) OPEN  ; channel: cds_fasta
  port 5: (value) OPEN  ; channel: proteins_fasta
  port 6: (value) OPEN  ; channel: validated
  port 7: (value) OPEN  ; channel: stats
  port 8: (value) OPEN  ; channel: annotated_genome_asn
  port 9: (value) OPEN  ; channel: annotation_data_comment
  port 10: (value) bound ; channel: star_bam
  port 11: (value) OPEN  ; channel: busco_results
  port 12: (value) OPEN  ; channel: gnomon_biotype_contam_rpt
  port 13: (value) OPEN  ; channel: user_gnomon_report
  port 14: (value) OPEN  ; channel: user_gnomon_quality_report
  port 15: (value) OPEN  ; channel: gnomon_summaries
  port 16: (value) bound ; channel: mask_stats
  port 17: (cntrl) -     ; channel: $

May-11 15:41:19.339 [main] DEBUG nextflow.Session - Session await > all processes finished
May-11 15:41:19.339 [main] DEBUG nextflow.Session - Session await > all barriers passed
May-11 15:41:19.342 [main] WARN  n.processor.TaskPollingMonitor - Killing running tasks (5)
May-11 15:41:19.353 [Actor Thread 7958] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:annot_proc_plane:gnomon_biotype:run_gnomon_biotype; work-dir=null
  error [java.lang.InterruptedException]: java.lang.InterruptedException
May-11 15:41:19.353 [Actor Thread 7961] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:annot_proc_plane:orthology_plane:diamond_orthology:run_diamond_egap; work-dir=null
  error [java.lang.InterruptedException]: java.lang.InterruptedException
May-11 15:41:19.353 [Actor Thread 7955] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
  task: name=egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration3:gnomon_training:run_gnomon_training; work-dir=null
  error [java.lang.InterruptedException]: java.lang.InterruptedException
May-11 15:41:19.354 [Task monitor] DEBUG n.processor.TaskPollingMonitor - <<< barrier arrives (monitor: local) - terminating tasks monitor poll loop
May-11 15:41:19.361 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
May-11 15:41:19.361 [Task submitter] INFO  nextflow.Session - [fb/defa07] Re-submitted process > egapx:rnaseq_short_plane:rnaseq_collapse:run_rnaseq_collapse (10)
May-11 15:41:19.367 [main] DEBUG n.trace.WorkflowStatsObserver - Workflow completed > WorkflowStats[succeededCount=1212; failedCount=26; ignoredCount=0; cachedCount=0; pendingCount=3; submittedCount=1; runningCount=-1; retriesCount=25; abortedCount=6; succeedDuration=27d 18h 6m 47s; failedDuration=55m 46s; cachedDuration=0ms;loadCpus=-16; loadMemory=0; peakRunning=22; peakCpus=100; peakMemory=976 GB; ]
May-11 15:41:19.367 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow completed -- saving trace file
May-11 15:41:19.369 [main] DEBUG nextflow.trace.ReportObserver - Workflow completed -- rendering execution report
May-11 15:41:20.311 [main] DEBUG nextflow.trace.TimelineObserver - Workflow completed -- rendering execution timeline
May-11 15:41:20.451 [main] DEBUG nextflow.cache.CacheDB - Closing CacheDB done
May-11 15:41:20.519 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye