Welcome to khmer, k-mer counting, filtering and graph traversal FTW!

The official repository is at

https://github.com/ged-lab/khmer

and you can read the docs online here:

http://readthedocs.org/docs/khmer/en/latest/

As of August 2011, there's a khmer mailing list at librelist.com that

you can use to get help with khmer. To sign up, just shoot

'khmer@librelist.com' an e-mail and it will subscribe you; then send

your question/comment there.

IMPORTANT NOTE:

khmer is *pre-publication* and *research* software, so please keep in

mind that (a) the code may have undiscovered bugs in it, (b) you

should cite us, and (c) you should get in touch if you need to cite

us, as we are writing up the project.

INSTRUCTIONS:

'make all' to build.

You'll need 'screed' installed: https://github.com/ged-lab/screed

'make test' to test (you may need to set your PYTHONPATH to find screed).

'make doc' to build docs. You'll need Sphinx installed.

khmer is under the BSD license; see doc/LICENSE.txt. Distribution,

modification and redistribution, incorporation into other software,

and pretty much everything else is allowed.

CTB 05/2012.