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Expose DataLoader kwargs (`TrainSettingsConfig.dataloader_kwargs`) + add validation helper `reject_reserved_keys` by deruyter92 · Pull Request #3554 · DeepLabCut/DeepLabCut · GitHub
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add TrainSettingsConfig.dataloader_kwargs
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deruyter92 committed Oct 16, 2026
commit 53c5b94e25d5bc8f02f98b5016b76be1fc5312db
2 changes: 2 additions & 0 deletions deeplabcut/pose_estimation_pytorch/apis/training.py
Original file line number Diff line number Diff line change
Expand Up @@ -153,13 +153,15 @@ def train(
batch_size = run_config["train_settings"]["batch_size"]
num_workers = run_config["train_settings"]["dataloader_workers"]
pin_memory = run_config["train_settings"]["dataloader_pin_memory"]
dataloader_kwargs = run_config["train_settings"].get("dataloader_kwargs") or {}
train_dataloader = DataLoader(
train_dataset,
batch_size=batch_size,
shuffle=True,
collate_fn=collate_fn,
num_workers=num_workers,
pin_memory=pin_memory,
**dataloader_kwargs,
)
valid_dataloader = DataLoader(valid_dataset, batch_size=1, shuffle=False)

Expand Down
25 changes: 25 additions & 0 deletions deeplabcut/pose_estimation_pytorch/config/training.py
Original file line number Diff line number Diff line change
Expand Up @@ -10,9 +10,24 @@
#
"""Training configuration classes for DeepLabCut pose estimation models."""

from typing import Any

from pydantic import field_validator

from deeplabcut.core.config import DLCBaseConfig
from deeplabcut.core.config.validation import reject_reserved_keys
from deeplabcut.core.weight_init import WeightInitialization

# DataLoader arguments set by DeepLabCut, mapped to the option that controls them
_RESERVED_DATALOADER_KWARGS = {
"dataset": None,
"batch_size": "batch_size",
"shuffle": None,
"collate_fn": "data.collate",
"num_workers": "dataloader_workers",
"pin_memory": "dataloader_pin_memory",
}


class TrainSettingsConfig(DLCBaseConfig):
"""Training settings configuration.
Expand All @@ -21,6 +36,9 @@ class TrainSettingsConfig(DLCBaseConfig):
batch_size: Training batch size
dataloader_workers: Number of data loader workers
dataloader_pin_memory: Whether to pin memory in data loader
dataloader_kwargs: Additional keyword arguments for the training
``torch.utils.data.DataLoader`` (e.g. ``persistent_workers``). Arguments
that DeepLabCut sets itself are reserved and cannot be given here.
display_iters: Display interval for training progress
epochs: Number of training epochs
seed: Random seed for reproducibility
Expand All @@ -30,9 +48,16 @@ class TrainSettingsConfig(DLCBaseConfig):
batch_size: int = 8
dataloader_workers: int = 0
dataloader_pin_memory: bool = False
dataloader_kwargs: dict[str, Any] | None = None
display_iters: int = 500
epochs: int = 200
seed: int = 42
# @TODO @deruyter92 2026-02-13: V0 pipeline uses None for default initialization
# (with ImageNet weights). We should update this to explicit WeightInitialization.
weight_init: WeightInitialization | None = None

@field_validator("dataloader_kwargs")
@classmethod
def validate_dataloader_kwargs(cls, v: dict[str, Any] | None) -> dict[str, Any] | None:
reject_reserved_keys(v, _RESERVED_DATALOADER_KWARGS, name="dataloader_kwargs")
return v
8 changes: 8 additions & 0 deletions docs/pytorch/pytorch_config.md
Original file line number Diff line number Diff line change
Expand Up @@ -439,11 +439,19 @@ and [memory pinning](https://pytorch.org/docs/stable/data.html#memory-pinning).
will use multi-process data loading. You should always keep
`dataloader_pin_memory: true` when training on an NVIDIA GPU.

Any other [`DataLoader`](https://pytorch.org/docs/stable/data.html#torch.utils.data.DataLoader)
argument can be passed to the training data loader with `dataloader_kwargs`. For example,
`persistent_workers: true` keeps the workers alive between epochs, and `prefetch_factor`
sets how many batches each worker loads in advance (both require `dataloader_workers > 0`).
Arguments that DeepLabCut sets itself (`dataset`, `batch_size`, `shuffle`, `collate_fn`,
`num_workers` and `pin_memory`) are reserved and cannot be set in `dataloader_kwargs`.

```yaml
train_settings:
batch_size: 1 # the batch size used for training
dataloader_workers: 0 # the number of workers for the PyTorch Dataloader
dataloader_pin_memory: true # pin DataLoader memory
dataloader_kwargs: null # extra DataLoader arguments, e.g. {persistent_workers: true}
display_iters: 500 # the number of iterations (steps) between each log print
epochs: 200 # the maximum number of epochs for which to train the model
seed: 42 # the random seed to set for reproducibility
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31 changes: 31 additions & 0 deletions tests/pose_estimation_pytorch/apis/test_apis_training.py
Original file line number Diff line number Diff line change
Expand Up @@ -55,3 +55,34 @@ def test_train_uses_resume_training_from_config(
train(loader=loader, run_config=run_config, task=Task.BOTTOM_UP, device="cpu", snapshot_path=None)

assert mock_build_runner.call_args.kwargs["snapshot_path"] == "/train/snapshot-010.pt"


@patch("deeplabcut.pose_estimation_pytorch.apis.training.DataLoader")
@patch("deeplabcut.pose_estimation_pytorch.apis.training.build_transforms", return_value=Mock())
@patch("deeplabcut.pose_estimation_pytorch.apis.training.PoseModel.build", return_value=Mock())
@patch("deeplabcut.pose_estimation_pytorch.apis.training.build_training_runner", return_value=Mock())
def test_train_passes_dataloader_kwargs_to_train_dataloader(
mock_build_runner: Mock,
mock_build_model: Mock,
mock_build_transforms: Mock,
mock_dataloader: Mock,
tmp_path: Path,
) -> None:
run_config = _minimal_run_config(tmp_path)
run_config.train_settings.dataloader_workers = 2
run_config.train_settings.dataloader_kwargs = {"persistent_workers": True, "prefetch_factor": 4}

loader = Mock()
loader.model_folder = tmp_path
loader.model_cfg = run_config
train_dataset = Mock(__len__=Mock(return_value=1))
valid_dataset = Mock(__len__=Mock(return_value=1))
loader.create_dataset = Mock(side_effect=[train_dataset, valid_dataset])

train(loader=loader, run_config=run_config, task=Task.BOTTOM_UP, device="cpu", snapshot_path=None)

train_call, valid_call = mock_dataloader.call_args_list
assert train_call.kwargs["num_workers"] == 2
assert train_call.kwargs["persistent_workers"] is True
assert train_call.kwargs["prefetch_factor"] == 4
assert "persistent_workers" not in valid_call.kwargs
54 changes: 54 additions & 0 deletions tests/pose_estimation_pytorch/config/test_train_settings_config.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,54 @@
#
# DeepLabCut Toolbox (deeplabcut.org)
# © A. & M.W. Mathis Labs
# https://github.com/DeepLabCut/DeepLabCut
#
# Please see AUTHORS for contributors.
# https://github.com/DeepLabCut/DeepLabCut/blob/main/AUTHORS
#
# Licensed under GNU Lesser General Public License v3.0
#
"""Tests for TrainSettingsConfig validation."""

from __future__ import annotations

import pytest
from pydantic import ValidationError

from deeplabcut.pose_estimation_pytorch.config.training import TrainSettingsConfig


def test_dataloader_kwargs_defaults_to_none() -> None:
assert TrainSettingsConfig().dataloader_kwargs is None


def test_old_configs_without_dataloader_kwargs_still_validate() -> None:
cfg = TrainSettingsConfig.from_dict({"batch_size": 4, "dataloader_workers": 2})
assert cfg.dataloader_kwargs is None


def test_dataloader_kwargs_accepts_extra_options() -> None:
kwargs = {"persistent_workers": True, "prefetch_factor": 4}
cfg = TrainSettingsConfig.from_dict({"dataloader_workers": 2, "dataloader_kwargs": kwargs})
assert cfg.dataloader_kwargs == kwargs
assert cfg.to_dict(normalize=True)["dataloader_kwargs"] == kwargs


@pytest.mark.parametrize(
("key", "hint"),
[
("num_workers", "dataloader_workers"),
("pin_memory", "dataloader_pin_memory"),
("batch_size", "batch_size"),
("collate_fn", "data.collate"),
],
)
def test_dataloader_kwargs_rejects_options_with_a_config_field(key: str, hint: str) -> None:
with pytest.raises(ValidationError, match=f"'{key}' \\(set via `{hint}`\\)"):
TrainSettingsConfig.from_dict({"dataloader_kwargs": {key: 1}})


@pytest.mark.parametrize("key", ["dataset", "shuffle"])
def test_dataloader_kwargs_rejects_options_managed_by_deeplabcut(key: str) -> None:
with pytest.raises(ValidationError, match=f"dataloader_kwargs cannot include reserved options: '{key}'"):
TrainSettingsConfig.from_dict({"dataloader_kwargs": {key: False}})
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