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The deepTools ecosystem

deepTools and related packages

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  1. pyGenomeTracks pyGenomeTracks Public

    python module to plot beautiful and highly customizable genome browser tracks

    Python 906 127

  2. deepTools deepTools Public

    Tools to process and analyze deep sequencing data.

    Python 772 223

  3. HiCExplorer HiCExplorer Public

    HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

    Python 281 76

  4. pyBigWig pyBigWig Public

    A python extension for quick access to bigWig and bigBed files

    C 253 57

  5. py2bit py2bit Public

    A python library for accessing 2bit files

    C 21 9

  6. HiCBrowser HiCBrowser Public

    Simple web browser to visualize HiC tracks

    JavaScript 19 5

Repositories

Showing 10 of 14 repositories
  • HiCExplorer Public

    HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

    deeptools/HiCExplorer's past year of commit activity
    Python 281 GPL-3.0 76 160 (1 issue needs help) 0 Updated Oct 30, 2026
  • pyBigWig Public

    A python extension for quick access to bigWig and bigBed files

    deeptools/pyBigWig's past year of commit activity
    C 253 MIT 57 9 1 Updated Oct 30, 2026
  • deepTools Public

    Tools to process and analyze deep sequencing data.

    deeptools/deepTools's past year of commit activity
    Python 772 MIT 223 87 15 Updated Oct 29, 2026
  • deeptools4_benchmark Public

    repo for benchmarking, comparison, test data and reference construction for the 25 remake.

    deeptools/deeptools4_benchmark's past year of commit activity
    Python 0 0 0 0 Updated Oct 26, 2026
  • pyGenomeTracks Public

    python module to plot beautiful and highly customizable genome browser tracks

    deeptools/pyGenomeTracks's past year of commit activity
    Python 906 GPL-3.0 127 22 4 Updated Oct 3, 2026
  • py2bit Public

    A python library for accessing 2bit files

    deeptools/py2bit's past year of commit activity
    C 21 MIT 9 0 0 Updated Apr 21, 2026
  • HiCMatrix Public
    deeptools/HiCMatrix's past year of commit activity
    Python 13 GPL-3.0 8 0 1 Updated Sep 4, 2025
  • github-actions Public archive

    Play around with github actions

    deeptools/github-actions's past year of commit activity
    JavaScript 0 MIT 1 0 12 Updated Aug 16, 2023
  • Knight-Ruiz-Matrix-balancing-algorithm Public
    deeptools/Knight-Ruiz-Matrix-balancing-algorithm's past year of commit activity
    C++ 10 4 5 1 Updated Apr 13, 2021
  • HiCBrowser Public

    Simple web browser to visualize HiC tracks

    deeptools/HiCBrowser's past year of commit activity
    JavaScript 19 GPL-2.0 5 6 2 Updated Dec 12, 2019
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