Issues

• dbGaP adapter: carry unit, bounds, comment and sentinel codes into the DD; fix crash on bare <value>

  linkml/schema-automator#231 · Filter by author gingin77 opened on Oct 6, 2026

• Zero-row tables are silently dropped instead of yielding a class from the header

  bug
  linkml/schema-automator#225 · Filter by author amc-corey-cox opened on Aug 28, 2026

• Adopt the linkml-redcap meta-schema as the source model for our REDCap adapter

  linkml/schema-automator#215 · Filter by author amc-corey-cox opened on Jun 4, 2026

• Adapter ecosystem for translating between existing DD formats and the canonical DD format

  linkml/schema-automator#202 · Filter by author amc-corey-cox opened on May 7, 2026
  

• Handle non-canonical and legacy data dictionaries

  linkml/schema-automator#200 · Filter by author amc-corey-cox opened on May 4, 2026

• Remove stale Docker Hub image linkml/schema-automator

  linkml/schema-automator#197 · Filter by author amc-corey-cox opened on Mar 30, 2026

• Infer pattern constraints from consistent value formats

  linkml/schema-automator#195 · Filter by author amc-corey-cox opened on Mar 25, 2026

• Infer units from data values using quantulum3

  linkml/schema-automator#194 · Filter by author amc-corey-cox opened on Mar 25, 2026

• Reconciliation report: inferred schema vs. declared data dictionary

  linkml/schema-automator#193 · Filter by author amc-corey-cox opened on Mar 25, 2026

• Schema enrichment pipeline: from raw data to validated, semantically-rich schemas

  linkml/schema-automator#190 · Filter by author amc-corey-cox opened on Mar 25, 2026
  2

• Evaluate incorporating Schema Sheets

  enhancement
  linkml/schema-automator#176 · Filter by author amc-corey-cox opened on Nov 5, 2025
  1

• Top-level container for gen-tsv's

  enhancement
  linkml/schema-automator#170 · Filter by author amc-corey-cox opened on Aug 20, 2025

• OWL class restrictions are not generated in the expected way

  bug
  linkml/schema-automator#159 · Filter by author hentoilusose opened on May 2, 2025

• Specifying class names for files when using generalize-tsvs

  enhancement
  linkml/schema-automator#158 · Filter by author ptgolden opened on Apr 23, 2025

• json_schema type not converting to linkml range

  bug
  linkml/schema-automator#135 · Filter by author proccaserra-az opened on Mar 14, 2024

• support allOf and anyOf in schema definitions

  enhancement
  linkml/schema-automator#130 · Filter by author satra opened on Feb 7, 2024
  1

• OWL language tags not escaped

  bug
  linkml/schema-automator#125 · Filter by author sneakers-the-rat opened on Jan 13, 2024

• Recognize inheritance patterns in json-schema to reconstruct class hierarchies

  linkml/schema-automator#124 · Filter by author cmungall opened on Jan 5, 2024

• Add tool for ingesting variables from dbgap

  enhancement
  linkml/schema-automator#112 · Filter by author cmungall opened on Jan 25, 2023

• Schema automator for OMOP: concept_class_id falsely inferred as idenitifier

  linkml/schema-automator#109 · Filter by author matentzn opened on Nov 20, 2022

• Using generalize-tsvs does not handle equal-named, different-mean columns correctly

  linkml/schema-automator#108 · Filter by author matentzn opened on Nov 20, 2022
  2

• recapitulate Biolink schema via KGX->LinkML schema-automator importer: handle categories

  linkml/schema-automator#103 · Filter by author sierra-moxon opened on Oct 10, 2022

• Help with AttributeError: 'NoneType' object has no attribute 'classes'

  linkml/schema-automator#99 · Filter by author matentzn opened on Oct 2, 2022
  6

• can any of the importers or generalizers infer that 0/1/True/False etc. are of type boolean?

  bug
  linkml/schema-automator#93 · Filter by author turbomam opened on Aug 24, 2022

• Write a pydantic-importer (pydantic class -> LinkML YAML)

  good first issue
  linkml/schema-automator#88 · Filter by author cmungall opened on Aug 17, 2022
  2