v1.0.1

Fixed an issue where long reads data wasn't being properly passed to gene prediction step in some cases
Fixed an issue where short RNA-seq library strandedness identification wasn't properly passed to downstream tasks
Fixed an issue where gnomon_biotype was incorrectly converting some single-exon genes to pseudogenes
Fixed issues where long reads and proteins alignment stats weren't reported correctly
Updated chainer parameters to match EGAP
Updated long read post-alignment filter to match EGAP
Updated diamond parameters in orthology plane to match EGAP
Updated prepare_submission to fix more product names causing validation errors
Removed human ALT/PATCH and readthrough proteins from ortholog reference set
Known issues
- EGAPx will not work properly on Nextflow v26
- Missing or errors in read stats when using local data
- EGAPx will abort if one or more RNAseq runs is assigned suspect by rna_strandedness task
- EGAPx will sometimes fail if using very large long RNA-seq datasets due to inadequate data splitting

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