Visitar URL original
Read SEQ_LEN in ReferenceObj_Read only after a row was read by tfenne · Pull Request #283 · ncbi/ncbi-vdb · GitHub
Skip to content

Read SEQ_LEN in ReferenceObj_Read only after a row was read #283

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
tfenne wants to merge 1 commit into
base: engineering
Choose a base branch
from
Open

Read SEQ_LEN in ReferenceObj_Read only after a row was read #283

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
13 changes: 7 additions & 6 deletions libs/align/reference.c
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1025,12 +1025,13 @@ LIB_EXPORT rc_t CC ReferenceObj_Read( const ReferenceObj* cself, INSDC_coord_zer
*written += q;
offset += q;
len -= q;
}
/* SEQ_LEN < MAX_SEQ_LEN is last row unless it is CIRCULAR */
if ( cself->mgr->reader_cols[ ereflst_cn_SEQ_LEN ].base.coord_len[ 0 ] < cself->mgr->max_seq_len )
{
if ( !cself->circular ) { break; }
offset = 0;
/* SEQ_LEN < MAX_SEQ_LEN is last row unless it is CIRCULAR;
* only a row that was read has a SEQ_LEN to look at */
if ( cself->mgr->reader_cols[ ereflst_cn_SEQ_LEN ].base.coord_len[ 0 ] < cself->mgr->max_seq_len )
{
if ( !cself->circular ) { break; }
offset = 0;
}
}
} while ( rc == 0 && q > 0 && len > 0 );
}
Expand Down