Repositories list

• linkml-reference-validator

  Public

  linkml/linkml-reference-validator’s past year of commit activity
  Validate that supporting text quotes in your data actually appear in their cited references

  pubmedmonarchinitiativelinkml+ 3

  pubmedmonarchinitiativelinkmlagentic-aiai-guardrailsai4curation

  Python

  •

  Apache License 2.0

  •33 forks in linkml/linkml-reference-validator•1414 stars in linkml/linkml-reference-validator•99 issues in linkml/linkml-reference-validator•44 pull requests in linkml/linkml-reference-validator•Updated Nov 2, 2026Nov 2, 2026

• linkml-term-validator

  Public

  linkml/linkml-term-validator’s past year of commit activity
  Validating LinkML schemas and datasets that depend on external terms

  validationontologiesobofoundry+ 1

  validationontologiesobofoundrylinkml

  Python

  •

  Apache License 2.0

  •11 fork in linkml/linkml-term-validator•99 stars in linkml/linkml-term-validator•1818 issues in linkml/linkml-term-validator•22 pull requests in linkml/linkml-term-validator•Updated Nov 2, 2026Nov 2, 2026

• linkml-map

  Public

  linkml/linkml-map’s past year of commit activity
  Mapping between LinkML schemas

  etlmappingmonarchinitiative+ 3

  etlmappingmonarchinitiativelinkmldata-model-mappingai4curation

  Python

  •

  Other

  •1515 forks in linkml/linkml-map•5050 stars in linkml/linkml-map•3333 issues in linkml/linkml-map•33 pull requests in linkml/linkml-map•Updated Nov 2, 2026Nov 2, 2026

• linkml-owl

  Public

  linkml/linkml-owl’s past year of commit activity
  Extension of LinkML runtime for converting instances of LinkML classes to OWL (classes or instances)

  templatesdesign-patternsowl+ 9

  templatesdesign-patternsowlontologiesontology-generationontology-design-patternsmetaclasseslinkmljson2owlyaml2owl+ 2

  Python

  •22 forks in linkml/linkml-owl•2323 stars in linkml/linkml-owl•1212 issues in linkml/linkml-owl•11 pull request in linkml/linkml-owl•Updated Nov 2, 2026Nov 2, 2026

• linkml

  Public

  linkml/linkml’s past year of commit activity
  Linked Open Data Modeling Language

  schemalinked-datajson-schema+ 13

  schemalinked-datajson-schemardfmodelingsemantic-webowlstandardsdata-modelinghacktoberfest+ 6

  Python

  •

  Apache License 2.0

  •200200 forks in linkml/linkml•680680 stars in linkml/linkml•788788 issues in linkml/linkml•134134 pull requests in linkml/linkml•Updated Nov 2, 2026Nov 2, 2026

• PyShEx

  Public

  linkml/PyShEx’s past year of commit activity
  ShEx interpreter for ShEx 2.0

  Jupyter Notebook

  •

  Creative Commons Zero v1.0 Universal

  •1717 forks in linkml/PyShEx•2929 stars in linkml/PyShEx•3333 issues in linkml/PyShEx•22 pull requests in linkml/PyShEx•Updated Nov 1, 2026Nov 1, 2026

• linkml-model

  Public

  linkml/linkml-model’s past year of commit activity
  Link Modeling Language (LinkML) model

  yamlmetadatajson+ 12

  yamlmetadatajsonlinked-datajson-schemaumlsemantic-webmetamodelschema-languagedata-integration+ 5

  Python

  •

  Creative Commons Zero v1.0 Universal

  •3434 forks in linkml/linkml-model•9696 stars in linkml/linkml-model•11 issue in linkml/linkml-model•2828 pull requests in linkml/linkml-model•Updated Nov 1, 2026Nov 1, 2026

• linkml-redcap

  Public

  linkml/linkml-redcap’s past year of commit activity
  A LinkML project based on the rules and structure REDCap data dictionaries, instruments and databases.

  Python

  •

  MIT License

  •00 forks in linkml/linkml-redcap•11 star in linkml/linkml-redcap•77 issues in linkml/linkml-redcap•11 pull request in linkml/linkml-redcap•Updated Nov 1, 2026Nov 1, 2026

• linkml-project-copier

  Public

  linkml/linkml-project-copier’s past year of commit activity
  A copier template for your next LinkML project

  templateschemacopier+ 3

  templateschemacopiermonarchinitiativelinkmlai4curation

  Python

  •

  MIT License

  •88 forks in linkml/linkml-project-copier•3131 stars in linkml/linkml-project-copier•1212 issues in linkml/linkml-project-copier•44 pull requests in linkml/linkml-project-copier•Updated Nov 1, 2026Nov 1, 2026

• pyjsg

  Public

  linkml/pyjsg’s past year of commit activity
  PyJSG -- JSON Schema Grammar bindings for Python

  Python

  •

  Creative Commons Zero v1.0 Universal

  •44 forks in linkml/pyjsg•77 stars in linkml/pyjsg•55 issues in linkml/pyjsg•66 pull requests in linkml/pyjsg•Updated Nov 1, 2026Nov 1, 2026

• linkml-solr

  Public
  Simple wrapper for using Solr with LinkML schemas

  metadatasolrlinkml

  metadatasolrlinkml

  Python

  •22 forks in linkml/linkml-solr•77 stars in linkml/linkml-solr•44 issues in linkml/linkml-solr•00 pull requests in linkml/linkml-solr•Updated Oct 30, 2026Oct 30, 2026

• schema-automator

  Public
  Automated assistance for the schema development lifecycle

  pythontoolslinked-data+ 8

  pythontoolslinked-dataowlspreadsheetsdata-modelingschema-inferencecsvslinkmlincatools+ 1

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2929 forks in linkml/schema-automator•6868 stars in linkml/schema-automator•2626 issues in linkml/schema-automator•11 pull request in linkml/schema-automator•Updated Oct 27, 2026Oct 27, 2026

• dm-bip

  Public
  Data Model Based Ingestion Pipeline

  Python

  •

  MIT License

  •00 forks in linkml/dm-bip•1616 stars in linkml/dm-bip•4747 issues in linkml/dm-bip•11 pull request in linkml/dm-bip•Updated Oct 13, 2026Oct 13, 2026

• linkml-store

  Public
  wrapper for multiple linkml storage engines

  mongomongodbrdf+ 10

  mongomongodbrdfdata-lakehdf5nosql-databasetriplestoredatabase-wrapperdata-stacksemweb+ 3

  Python

  •

  MIT License

  •88 forks in linkml/linkml-store•2727 stars in linkml/linkml-store•2727 issues in linkml/linkml-store•1212 pull requests in linkml/linkml-store•Updated Oct 9, 2026Oct 9, 2026

• bdc-variable-library

  Public
  linkml model for variables in the BDC Knowledge Library

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks in linkml/bdc-variable-library•00 stars in linkml/bdc-variable-library•00 issues in linkml/bdc-variable-library•11 pull request in linkml/bdc-variable-library•Updated Oct 8, 2026Oct 8, 2026

• valuesets

  Public
  Common value sets (enums) for science, biomedicine, computing, and other areas

  semanticsstandardsmonarchinitiative+ 4

  semanticsstandardsmonarchinitiativefair-datalinkmlvalue-setsai4curation

  Python

  •

  Apache License 2.0

  •00 forks in linkml/valuesets•1616 stars in linkml/valuesets•66 issues in linkml/valuesets•66 pull requests in linkml/valuesets•Updated Oct 8, 2026Oct 8, 2026

• clinical-microschemas

  Public
  Repository for clinical microschemas based on the linkml-microschema repo

  Just

  •

  MIT License

  •11 fork in linkml/clinical-microschemas•22 stars in linkml/clinical-microschemas•00 issues in linkml/clinical-microschemas•44 pull requests in linkml/clinical-microschemas•Updated Oct 7, 2026Oct 7, 2026

• grammar-python-antlr-linkml

  Public
  Python Antlr ShExC parser

  Python

  •

  MIT License

  •22 forks in linkml/grammar-python-antlr-linkml•00 stars in linkml/grammar-python-antlr-linkml•11 issue in linkml/grammar-python-antlr-linkml•22 pull requests in linkml/grammar-python-antlr-linkml•Updated Sep 25, 2026Sep 25, 2026

• GeoData

  Public
  Experimenting with a data schema for earth science data

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks in linkml/GeoData•22 stars in linkml/GeoData•00 issues in linkml/GeoData•11 pull request in linkml/GeoData•Updated Sep 1, 2026Sep 1, 2026

• linkml-arrays

  Public
  Support for loading and dumping N-dimensional arrays in LinkML.

  linked-datanumpyarrays+ 4

  linked-datanumpyarraysmultidimensional-arrayszarrlinkmlhdmf

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •11 fork in linkml/linkml-arrays•77 stars in linkml/linkml-arrays•22 issues in linkml/linkml-arrays•22 pull requests in linkml/linkml-arrays•Updated Aug 3, 2026Aug 3, 2026

• ShExJSG

  Public
  ShEx AST as python classes

  Python

  •

  Creative Commons Zero v1.0 Universal

  •22 forks in linkml/ShExJSG•55 stars in linkml/ShExJSG•22 issues in linkml/ShExJSG•88 pull requests in linkml/ShExJSG•Updated Aug 1, 2026Aug 1, 2026

• linkml-data-qc

  Public
  A compliance analysis tool for LinkML data files

  data-engineeringfair-datadata-qc+ 1

  data-engineeringfair-datadata-qclinkml

  Python

  •

  Apache License 2.0

  •00 forks in linkml/linkml-data-qc•44 stars in linkml/linkml-data-qc•00 issues in linkml/linkml-data-qc•22 pull requests in linkml/linkml-data-qc•Updated Aug 1, 2026Aug 1, 2026

• linkml-registry

  Public
  Registry of schemas that use LinkML

  registryschema-registryschemas+ 1

  registryschema-registryschemaslinkml

  Python

  •

  Apache License 2.0

  •77 forks in linkml/linkml-registry•2020 stars in linkml/linkml-registry•22 issues in linkml/linkml-registry•11 pull request in linkml/linkml-registry•Updated Jul 27, 2026Jul 27, 2026

• prefixmaps

  Public
  Semantic prefix map registry

  obofoundrybioregistrylinkml+ 1

  obofoundrybioregistrylinkmlprefixmaps

  Python

  •

  Apache License 2.0

  •55 forks in linkml/prefixmaps•1414 stars in linkml/prefixmaps•99 issues in linkml/prefixmaps•44 pull requests in linkml/prefixmaps•Updated Jul 2, 2026Jul 2, 2026

• linkml-microschema-profile

  Public
  LinkML schema for CDEs

  Just

  •

  MIT License

  •11 fork in linkml/linkml-microschema-profile•22 stars in linkml/linkml-microschema-profile•11 issue in linkml/linkml-microschema-profile•44 pull requests in linkml/linkml-microschema-profile•Updated Jul 1, 2026Jul 1, 2026

• nsrr-sleep-cde-schema

  Public
  Python

  •

  MIT License

  •00 forks in linkml/nsrr-sleep-cde-schema•11 star in linkml/nsrr-sleep-cde-schema•00 issues in linkml/nsrr-sleep-cde-schema•55 pull requests in linkml/nsrr-sleep-cde-schema•Updated May 14, 2026May 14, 2026

• linkml.github.io

  Public
  Website/splash page for main LinkML project

  jekyllwebsitedata-modeling+ 2

  jekyllwebsitedata-modelingsplash-pagelinkml

  HTML

  •

  MIT License

  •77 forks in linkml/linkml.github.io•33 stars in linkml/linkml.github.io•1010 issues in linkml/linkml.github.io•22 pull requests in linkml/linkml.github.io•Updated May 7, 2026May 7, 2026

• linkml-browser

  Public
  javascriptpythonstatic-site-generator+ 2

  javascriptpythonstatic-site-generatoruser-interfacelinkml

  HTML

  •00 forks in linkml/linkml-browser•88 stars in linkml/linkml-browser•11 issue in linkml/linkml-browser•66 pull requests in linkml/linkml-browser•Updated Mar 8, 2026Mar 8, 2026

• linkml-neon

  Public
  Experimenting with creating a LinkML schema for NEON data

  environmental-dataneon-datalinkml

  environmental-dataneon-datalinkml

  Python

  •

  MIT License

  •00 forks in linkml/linkml-neon•11 star in linkml/linkml-neon•00 issues in linkml/linkml-neon•55 pull requests in linkml/linkml-neon•Updated Mar 6, 2026Mar 6, 2026

• linkml-tutorial

  Public
  tutoriallinkml

  tutoriallinkml

  Python

  •

  MIT License

  •11 fork in linkml/linkml-tutorial•1010 stars in linkml/linkml-tutorial•00 issues in linkml/linkml-tutorial•00 pull requests in linkml/linkml-tutorial•Updated Feb 12, 2026Feb 12, 2026