
How does the gut microbiota influence the immune system beyond the production of microbial metabolites? This review highlights an emerging regulatory axis linking microbial metabolites, epigenetic mechanisms, and cytokine gene expression. It explores how short-chain fatty acids, bile acids, and tryptophan derivatives reshape chromatin states and regulate cytokine programs, thereby influencing inflammatory and tolerogenic immune responses. By bringing together microbiome biology and cytokine epigenetics, the article provides a timely perspective on how the gut microbiota may shape immune homeostasis and future therapeutic strategies. This cover image was generated using AI-assisted tools. The authors confirm that it contains no identifiable human likenesses, copyrighted elements, or misleading content.
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